Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48500 * 109.47126 * 274.98213 * 3 2 1 5 5 H 1.48496 * 109.47140 * 34.98264 * 3 2 1 6 6 H 1.48503 * 109.46969 * 154.98300 * 3 2 1 7 7 C 1.40054 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 186.15227 * 7 2 1 9 9 C 1.46369 * 119.99940 * 6.14518 * 7 2 1 10 10 O 1.21688 * 120.00236 * 353.94716 * 9 7 2 11 11 N 1.34782 * 119.99865 * 173.94435 * 9 7 2 12 12 C 1.46500 * 119.99983 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47072 * 179.97438 * 12 11 9 14 14 O 1.42902 * 109.46476 * 300.00082 * 13 12 11 15 15 C 1.52994 * 109.46656 * 59.98580 * 13 12 11 16 16 C 1.53002 * 109.46821 * 180.17592 * 15 13 12 17 17 C 1.52954 * 109.44782 * 300.20856 * 16 15 13 18 18 C 1.52953 * 109.82699 * 59.65094 * 17 16 15 19 19 C 1.52990 * 109.46636 * 180.02562 * 13 12 11 20 20 O 1.43697 * 109.42606 * 179.80598 * 17 16 15 21 21 C 1.44803 * 104.79504 * 95.47730 * 20 17 16 22 22 C 1.54910 * 101.72317 * 36.06972 * 21 20 17 23 23 O 1.43309 * 109.62549 * 299.11928 * 17 16 15 24 24 H 0.96998 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00066 * 359.97438 * 11 9 7 26 26 H 1.09001 * 109.46910 * 59.99899 * 12 11 9 27 27 H 1.08999 * 109.47243 * 299.99633 * 12 11 9 28 28 H 0.96702 * 114.00348 * 59.99975 * 14 13 12 29 29 H 1.08997 * 109.47606 * 300.17121 * 15 13 12 30 30 H 1.09009 * 109.46996 * 60.17592 * 15 13 12 31 31 H 1.09001 * 109.47383 * 180.21377 * 16 15 13 32 32 H 1.08996 * 109.47637 * 60.20830 * 16 15 13 33 33 H 1.09001 * 109.47490 * 180.37677 * 18 17 16 34 34 H 1.08997 * 109.48086 * 60.35964 * 18 17 16 35 35 H 1.08994 * 109.47253 * 299.84068 * 19 13 12 36 36 H 1.09006 * 109.47048 * 59.83902 * 19 13 12 37 37 H 1.09003 * 110.97481 * 277.96098 * 21 20 17 38 38 H 1.09001 * 111.00601 * 154.19589 * 21 20 17 39 39 H 1.09004 * 110.69058 * 206.07962 * 22 21 20 40 40 H 1.09000 * 110.84324 * 82.94512 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6199 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2129 -0.0005 8 1 3.0824 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1368 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2601 12 6 1.2349 -4.8991 -0.3970 13 6 2.2350 -6.0505 -0.5199 14 8 3.0573 -5.8463 -1.6706 15 6 3.1129 -6.0991 0.7321 16 6 4.1159 -7.2478 0.6074 17 6 3.3605 -8.5693 0.4572 18 6 2.4765 -8.5227 -0.7901 19 6 1.4765 -7.3714 -0.6635 20 8 4.3029 -9.6473 0.3355 21 6 4.4437 -10.1687 1.6791 22 6 3.0032 -10.0170 2.2282 23 8 2.5475 -8.7934 1.6159 24 1 -0.4850 0.8400 0.0004 25 1 2.9311 -3.6294 -0.2589 26 1 0.6099 -4.8644 -1.2894 27 1 0.6073 -5.0546 0.4804 28 1 3.5684 -5.0257 -1.6482 29 1 3.6509 -5.1568 0.8355 30 1 2.4860 -6.2577 1.6096 31 1 4.7389 -7.2848 1.5010 32 1 4.7452 -7.0873 -0.2679 33 1 1.9361 -9.4642 -0.8879 34 1 3.0990 -8.3677 -1.6713 35 1 0.8510 -7.5287 0.2151 36 1 0.8492 -7.3352 -1.5543 37 1 5.1471 -9.5703 2.2581 38 1 4.7468 -11.2156 1.6621 39 1 3.0128 -9.9239 3.3142 40 1 2.3804 -10.8569 1.9204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332375133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -186.858987 kcal Electronic energy + Delta-G solvation = -23705.532107 eV Core-core repulsion = 20098.898848 eV Total energy + Delta-G solvation = -3606.633258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05790 -38.92281 -36.84270 -35.16041 -34.28519 -33.04742 -32.21273 -30.99394 -30.26444 -28.41911 -26.40917 -24.32653 -23.62204 -22.85361 -21.17911 -19.68807 -19.57653 -17.65302 -17.23746 -17.03501 -16.00710 -15.77265 -15.46217 -14.97153 -14.83846 -14.24778 -13.95411 -13.87234 -13.74115 -13.53564 -13.09631 -12.97188 -12.76625 -12.33364 -12.17467 -12.07573 -11.95099 -11.47189 -11.30963 -11.19940 -11.11729 -10.89578 -10.77401 -10.54026 -10.42081 -10.34148 -10.19548 -9.62164 -9.37709 -8.85416 -7.62824 -7.53754 -6.20166 -4.64691 3.13683 3.20771 3.21641 3.24112 3.77136 4.09437 4.32256 4.40115 4.56165 4.58465 4.62185 4.65104 4.81717 4.90921 4.98365 5.11886 5.23184 5.29537 5.36443 5.37724 5.51424 5.53925 5.70817 5.77159 5.81409 5.94657 5.98654 6.11882 6.19307 6.29168 6.34701 6.50554 6.56179 6.98873 7.42705 7.80732 7.92443 8.06704 8.30288 9.01776 9.49397 10.59025 10.77409 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.003580 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.141027 B = 7819.583830 C = 7972.632545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.766 5.766 12 C 0.110 3.890 13 C 0.125 3.875 14 O -0.557 6.557 15 C -0.137 4.137 16 C -0.129 4.129 17 C 0.259 3.741 18 C -0.112 4.112 19 C -0.096 4.096 20 O -0.373 6.373 21 C 0.015 3.985 22 C 0.019 3.981 23 O -0.371 6.371 24 H 0.268 0.732 25 H 0.375 0.625 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.376 0.624 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 -18.557 2.959 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.462 6.462 11 N -0.423 5.423 12 C -0.015 4.015 13 C 0.084 3.916 14 O -0.363 6.363 15 C -0.175 4.175 16 C -0.167 4.167 17 C 0.183 3.817 18 C -0.149 4.149 19 C -0.134 4.134 20 O -0.294 6.294 21 C -0.062 4.062 22 C -0.058 4.058 23 O -0.292 6.292 24 H 0.079 0.921 25 H 0.207 0.793 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.224 0.776 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.103 -18.962 2.657 20.792 hybrid contribution 1.264 1.246 0.404 1.821 sum 9.368 -17.716 3.061 20.273 Atomic orbital electron populations 1.70027 1.07093 1.27275 1.35200 1.25707 0.94592 1.00309 0.92608 0.86360 0.80196 0.81516 0.78677 1.19797 1.20476 1.18915 1.20872 0.94039 0.89599 1.53895 0.91439 1.18216 0.87157 0.82315 0.76394 1.90604 1.14117 1.86349 1.55130 1.46134 1.08160 1.05872 1.82158 1.21524 0.94391 0.84323 1.01292 1.21443 0.90220 0.94890 0.85002 1.86459 1.61577 1.45680 1.42587 1.22098 0.98180 0.98074 0.99161 1.22014 0.98294 0.93390 1.02955 1.23412 0.83708 0.87619 0.87008 1.21689 0.97701 0.99145 0.96394 1.21378 0.97149 0.91360 1.03477 1.89262 1.63171 1.49728 1.27191 1.24347 0.97130 1.01053 0.83662 1.24164 0.94081 0.88170 0.99345 1.88935 1.57884 1.41193 1.41236 0.92104 0.79312 0.92514 0.92568 0.77614 0.90746 0.90088 0.91699 0.89606 0.91236 0.89341 0.89746 0.90447 0.90765 0.87621 0.88467 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.85 55.55 0.66 -22.45 16 2 C 0.09 2.45 5.49 -17.36 -0.10 2.35 16 3 Si 0.91 20.08 29.56 -169.99 -5.03 15.06 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.55 -15.35 9.53 -35.63 -0.34 -15.69 16 8 H 0.07 1.72 7.86 -52.48 -0.41 1.31 16 9 C 0.56 15.75 7.74 -12.99 -0.10 15.65 16 10 O -0.58 -18.93 15.05 5.20 0.08 -18.85 16 11 N -0.77 -16.65 5.02 -61.72 -0.31 -16.96 16 12 C 0.11 2.13 4.81 -4.04 -0.02 2.11 16 13 C 0.13 1.87 0.71 -90.63 -0.06 1.80 16 14 O -0.56 -8.19 11.62 -35.23 -0.41 -8.60 16 15 C -0.14 -1.88 4.61 -26.73 -0.12 -2.01 16 16 C -0.13 -1.58 5.13 -26.75 -0.14 -1.72 16 17 C 0.26 3.20 1.02 -26.78 -0.03 3.17 16 18 C -0.11 -1.40 5.18 -26.75 -0.14 -1.54 16 19 C -0.10 -1.31 4.81 -26.73 -0.13 -1.43 16 20 O -0.37 -4.43 10.99 -59.04 -0.65 -5.08 16 21 C 0.01 0.12 7.91 38.16 0.30 0.42 16 22 C 0.02 0.16 8.07 38.16 0.31 0.47 16 23 O -0.37 -4.57 9.62 -59.04 -0.57 -5.14 16 24 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 25 H 0.37 6.95 6.37 -40.82 -0.26 6.69 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.38 4.91 7.85 45.56 0.36 5.26 16 29 H 0.07 1.02 6.86 -51.93 -0.36 0.66 16 30 H 0.08 1.19 7.72 -51.92 -0.40 0.79 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.17 7.69 -51.93 -0.40 0.77 16 35 H 0.08 1.15 7.72 -51.93 -0.40 0.75 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -35.50 321.36 -7.15 -42.66 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.21 Total: 10.95 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.56 Total: 3.58 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.35 Total: -39.41 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.55 Total: -37.67 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.50 -7.15 -42.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332375133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.204 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds