Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48500 * 109.47126 * 274.98213 * 3 2 1 5 5 H 1.48496 * 109.47140 * 34.98264 * 3 2 1 6 6 H 1.48503 * 109.46969 * 154.98300 * 3 2 1 7 7 C 1.40054 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 186.15227 * 7 2 1 9 9 C 1.46369 * 119.99940 * 6.14518 * 7 2 1 10 10 O 1.21688 * 120.00236 * 353.94716 * 9 7 2 11 11 N 1.34782 * 119.99865 * 173.94435 * 9 7 2 12 12 C 1.46500 * 119.99983 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47072 * 179.97438 * 12 11 9 14 14 O 1.42902 * 109.46476 * 300.00082 * 13 12 11 15 15 C 1.52994 * 109.46656 * 59.98580 * 13 12 11 16 16 C 1.53002 * 109.46821 * 180.17592 * 15 13 12 17 17 C 1.52954 * 109.44782 * 300.20856 * 16 15 13 18 18 C 1.52953 * 109.82699 * 59.65094 * 17 16 15 19 19 C 1.52990 * 109.46636 * 180.02562 * 13 12 11 20 20 O 1.43697 * 109.42606 * 179.80598 * 17 16 15 21 21 C 1.44803 * 104.79504 * 95.47730 * 20 17 16 22 22 C 1.54910 * 101.72317 * 36.06972 * 21 20 17 23 23 O 1.43309 * 109.62549 * 299.11928 * 17 16 15 24 24 H 0.96998 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00066 * 359.97438 * 11 9 7 26 26 H 1.09001 * 109.46910 * 59.99899 * 12 11 9 27 27 H 1.08999 * 109.47243 * 299.99633 * 12 11 9 28 28 H 0.96702 * 114.00348 * 59.99975 * 14 13 12 29 29 H 1.08997 * 109.47606 * 300.17121 * 15 13 12 30 30 H 1.09009 * 109.46996 * 60.17592 * 15 13 12 31 31 H 1.09001 * 109.47383 * 180.21377 * 16 15 13 32 32 H 1.08996 * 109.47637 * 60.20830 * 16 15 13 33 33 H 1.09001 * 109.47490 * 180.37677 * 18 17 16 34 34 H 1.08997 * 109.48086 * 60.35964 * 18 17 16 35 35 H 1.08994 * 109.47253 * 299.84068 * 19 13 12 36 36 H 1.09006 * 109.47048 * 59.83902 * 19 13 12 37 37 H 1.09003 * 110.97481 * 277.96098 * 21 20 17 38 38 H 1.09001 * 111.00601 * 154.19589 * 21 20 17 39 39 H 1.09004 * 110.69058 * 206.07962 * 22 21 20 40 40 H 1.09000 * 110.84324 * 82.94512 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4948 2.6199 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2129 -0.0005 8 1 3.0824 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1368 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2601 12 6 1.2349 -4.8991 -0.3970 13 6 2.2350 -6.0505 -0.5199 14 8 3.0573 -5.8463 -1.6706 15 6 3.1129 -6.0991 0.7321 16 6 4.1159 -7.2478 0.6074 17 6 3.3605 -8.5693 0.4572 18 6 2.4765 -8.5227 -0.7901 19 6 1.4765 -7.3714 -0.6635 20 8 4.3029 -9.6473 0.3355 21 6 4.4437 -10.1687 1.6791 22 6 3.0032 -10.0170 2.2282 23 8 2.5475 -8.7934 1.6159 24 1 -0.4850 0.8400 0.0004 25 1 2.9311 -3.6294 -0.2589 26 1 0.6099 -4.8644 -1.2894 27 1 0.6073 -5.0546 0.4804 28 1 3.5684 -5.0257 -1.6482 29 1 3.6509 -5.1568 0.8355 30 1 2.4860 -6.2577 1.6096 31 1 4.7389 -7.2848 1.5010 32 1 4.7452 -7.0873 -0.2679 33 1 1.9361 -9.4642 -0.8879 34 1 3.0990 -8.3677 -1.6713 35 1 0.8510 -7.5287 0.2151 36 1 0.8492 -7.3352 -1.5543 37 1 5.1471 -9.5703 2.2581 38 1 4.7468 -11.2156 1.6621 39 1 3.0128 -9.9239 3.3142 40 1 2.3804 -10.8569 1.9204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332375133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -215.586757 kcal Electronic energy + Delta-G solvation = -23706.777836 eV Core-core repulsion = 20098.898848 eV Total energy + Delta-G solvation = -3607.878988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97203 -40.25207 -38.79418 -36.01142 -35.40156 -34.94472 -34.29468 -32.05833 -31.39556 -29.62866 -28.25130 -25.82161 -24.42709 -23.83397 -22.43375 -21.54043 -20.76597 -19.50701 -18.10399 -17.98782 -17.57827 -17.02010 -16.69846 -16.41218 -16.26944 -15.66314 -15.46918 -15.04876 -15.02176 -14.63661 -14.32516 -14.28524 -13.91319 -13.76082 -13.48686 -13.25777 -13.12118 -13.00491 -12.74729 -12.66500 -12.60698 -12.38953 -12.22128 -12.01382 -11.79134 -11.57834 -11.08744 -10.93577 -10.87333 -10.36467 -9.89125 -9.53238 -8.30470 -6.85721 1.41231 1.42373 1.58395 2.24628 2.45376 2.46907 2.91489 3.00001 3.25752 3.57558 3.60267 3.64164 3.70939 3.78056 3.98602 4.05833 4.17346 4.26105 4.30465 4.45403 4.49061 4.61152 4.65063 4.70450 4.75185 4.82568 4.90792 4.96420 5.02447 5.11853 5.13691 5.22615 5.32378 5.35943 5.85061 6.15694 6.17621 6.23908 6.72528 6.86541 7.50877 8.47767 8.66567 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.003580 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.141027 B = 7819.583830 C = 7972.632545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.537 3.463 10 O -0.634 6.634 11 N -0.748 5.748 12 C 0.114 3.886 13 C 0.140 3.860 14 O -0.558 6.558 15 C -0.131 4.131 16 C -0.123 4.123 17 C 0.259 3.741 18 C -0.107 4.107 19 C -0.095 4.095 20 O -0.389 6.389 21 C 0.011 3.989 22 C 0.012 3.988 23 O -0.393 6.393 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.383 0.617 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.079 -18.955 3.448 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.609 4.609 8 H 0.109 0.891 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.404 5.404 12 C -0.012 4.012 13 C 0.099 3.901 14 O -0.365 6.365 15 C -0.169 4.169 16 C -0.161 4.161 17 C 0.182 3.818 18 C -0.145 4.145 19 C -0.133 4.133 20 O -0.310 6.310 21 C -0.064 4.064 22 C -0.064 4.064 23 O -0.314 6.314 24 H 0.084 0.916 25 H 0.228 0.772 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.233 0.767 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.714 -19.415 3.148 22.398 hybrid contribution 0.455 1.262 0.280 1.371 sum 11.170 -18.153 3.428 21.588 Atomic orbital electron populations 1.70200 1.09655 1.28971 1.36399 1.27010 0.95490 1.05088 0.91180 0.84978 0.78959 0.75041 0.79118 1.18869 1.19928 1.16905 1.21429 0.95311 0.90083 1.54052 0.89089 1.18654 0.86778 0.84278 0.76142 1.90559 1.16430 1.87533 1.57618 1.45704 1.09020 1.05277 1.80427 1.21594 0.95268 0.84900 0.99402 1.21272 0.89470 0.93407 0.85927 1.86465 1.61377 1.46179 1.42459 1.22002 0.98129 0.99011 0.97740 1.21961 0.97819 0.92715 1.03568 1.23293 0.83775 0.87862 0.86840 1.21625 0.97418 0.98777 0.96655 1.21362 0.97419 0.91180 1.03342 1.89239 1.62909 1.49531 1.29282 1.24615 0.97068 1.02662 0.82097 1.24436 0.94434 0.87180 1.00376 1.88916 1.58324 1.42888 1.41319 0.91583 0.77167 0.94842 0.94185 0.76738 0.90676 0.91099 0.90513 0.89490 0.90308 0.89873 0.89909 0.90668 0.89863 0.85003 0.86540 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.74 11.85 21.84 0.26 -50.48 16 2 C 0.03 1.52 5.49 85.31 0.47 1.99 16 3 Si 1.00 40.69 29.56 68.60 2.03 42.72 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.57 -32.14 9.53 24.83 0.24 -31.91 16 8 H 0.09 4.51 7.86 -2.91 -0.02 4.49 16 9 C 0.54 31.25 7.74 86.36 0.67 31.92 16 10 O -0.63 -43.24 15.05 -4.31 -0.06 -43.31 16 11 N -0.75 -32.99 5.02 -467.40 -2.35 -35.34 16 12 C 0.11 4.54 4.81 86.38 0.42 4.95 16 13 C 0.14 4.16 0.71 -10.80 -0.01 4.15 16 14 O -0.56 -15.93 11.62 -148.98 -1.73 -17.66 16 15 C -0.13 -3.48 4.61 30.59 0.14 -3.34 16 16 C -0.12 -2.80 5.13 30.58 0.16 -2.65 16 17 C 0.26 5.97 1.02 30.56 0.03 6.00 16 18 C -0.11 -2.58 5.18 30.58 0.16 -2.42 16 19 C -0.10 -2.58 4.81 30.60 0.15 -2.43 16 20 O -0.39 -8.38 10.99 -126.22 -1.39 -9.76 16 21 C 0.01 0.15 7.91 72.63 0.57 0.73 16 22 C 0.01 0.17 8.07 72.63 0.59 0.76 16 23 O -0.39 -9.07 9.62 -126.22 -1.21 -10.28 16 24 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 25 H 0.39 14.36 6.37 -92.71 -0.59 13.77 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.38 9.53 7.85 -74.06 -0.58 8.95 16 29 H 0.07 1.96 6.86 -2.39 -0.02 1.94 16 30 H 0.07 2.05 7.72 -2.38 -0.02 2.03 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.98 7.68 -2.39 -0.02 1.96 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.09 7.69 -2.39 -0.02 2.07 16 35 H 0.08 2.27 7.72 -2.39 -0.02 2.25 16 36 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -78.83 321.36 -0.99 -79.82 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.11 Total: 36.53 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 3.58 Total: 7.76 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.09 Total: -85.82 kcal Atomic # 8 Polarization: -76.61 SS G_CDS: -4.40 Total: -81.01 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -78.83 -0.99 -79.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332375133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.767 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds