Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47179 * 2 1 4 4 C 1.46901 * 110.99912 * 195.77724 * 3 2 1 5 5 C 1.50693 * 109.47398 * 66.04712 * 4 3 2 6 6 H 1.07998 * 120.00117 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00116 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99723 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47285 * 59.99650 * 9 7 5 11 11 H 1.48501 * 109.47342 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47048 * 299.99853 * 9 7 5 13 13 C 1.38378 * 110.99608 * 71.81978 * 3 2 1 14 14 N 1.31468 * 126.44152 * 58.10797 * 13 3 2 15 15 N 1.28425 * 110.51382 * 179.81348 * 14 13 3 16 16 N 1.28914 * 110.31234 * 0.45324 * 15 14 13 17 17 N 1.35314 * 126.43836 * 238.40414 * 13 3 2 18 18 C 1.46500 * 127.38225 * 359.97438 * 17 13 3 19 19 C 1.52989 * 109.47662 * 95.41334 * 18 17 13 20 20 C 1.53002 * 109.47320 * 183.69428 * 19 18 17 21 21 S 1.81409 * 109.46912 * 180.02562 * 20 19 18 22 22 C 1.81399 * 102.99542 * 180.02562 * 21 20 19 23 23 H 1.09006 * 109.46966 * 297.12216 * 1 2 3 24 24 H 1.08995 * 109.47661 * 57.12588 * 1 2 3 25 25 H 1.09000 * 109.47085 * 177.13073 * 1 2 3 26 26 H 1.09003 * 109.46919 * 240.00526 * 2 1 3 27 27 H 1.08996 * 109.47712 * 120.00528 * 2 1 3 28 28 H 1.08995 * 109.47187 * 306.04203 * 4 3 2 29 29 H 1.09003 * 109.46828 * 186.04537 * 4 3 2 30 30 H 0.97009 * 119.99848 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46935 * 215.41753 * 18 17 13 32 32 H 1.09004 * 109.46643 * 335.41103 * 18 17 13 33 33 H 1.09004 * 109.47377 * 303.69497 * 19 18 17 34 34 H 1.09002 * 109.46957 * 63.69416 * 19 18 17 35 35 H 1.08998 * 109.47250 * 300.00058 * 20 19 18 36 36 H 1.08999 * 109.46641 * 60.00260 * 20 19 18 37 37 H 1.08998 * 109.47351 * 59.99905 * 22 21 20 38 38 H 1.09003 * 109.46873 * 179.97438 * 22 21 20 39 39 H 1.09005 * 109.47458 * 299.99722 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4394 1.4414 -0.3729 5 6 3.6002 1.0044 -1.8061 6 1 2.7343 0.7134 -2.3822 7 6 4.8527 0.9760 -2.3818 8 7 5.9069 1.3308 -1.6804 9 14 5.0518 0.4349 -4.1586 10 1 4.2714 1.3384 -5.0417 11 1 6.4871 0.4918 -4.5355 12 1 4.5554 -0.9563 -4.3110 13 6 1.8049 1.9868 1.2274 14 7 2.2553 1.5711 2.3905 15 7 1.8764 2.3620 3.3286 16 7 1.1608 3.3192 2.8453 17 7 1.0872 3.1108 1.4568 18 6 0.3846 3.9345 0.4698 19 6 -1.0845 3.5124 0.4062 20 6 -1.7971 4.3088 -0.6888 21 16 -3.5393 3.8087 -0.7635 22 6 -4.2038 4.8437 -2.0968 23 1 -0.3633 0.4685 0.9147 24 1 -0.3634 0.5578 -0.8630 25 1 -0.3633 -1.0264 -0.0514 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.0120 0.7783 0.2756 29 1 3.8040 2.4626 -0.2614 30 1 6.7881 1.3112 -2.0856 31 1 0.4492 4.9832 0.7598 32 1 0.8442 3.7993 -0.5093 33 1 -1.1473 2.4478 0.1805 34 1 -1.5609 3.7088 1.3668 35 1 -1.7343 5.3733 -0.4631 36 1 -1.3207 4.1122 -1.6492 37 1 -3.6674 4.6332 -3.0220 38 1 -5.2629 4.6247 -2.2333 39 1 -4.0805 5.8951 -1.8366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332499475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = 114.665111 kcal Electronic energy + Delta-G solvation = -20788.544699 eV Core-core repulsion = 17702.324880 eV Total energy + Delta-G solvation = -3086.219819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52320 -37.43590 -36.13910 -32.92139 -32.71730 -31.30752 -30.01475 -29.27740 -27.46340 -26.51123 -23.23840 -23.06959 -22.69747 -21.59683 -20.19993 -17.36192 -16.74244 -16.27601 -15.97787 -15.81816 -15.51130 -14.87621 -14.26348 -14.17356 -14.00084 -13.84205 -13.74771 -13.21781 -12.81951 -12.55923 -12.41695 -12.31801 -12.13274 -11.90342 -11.51532 -11.21896 -11.07834 -10.97833 -10.78924 -10.61765 -10.56411 -10.33106 -10.26757 -10.04443 -9.66262 -9.41199 -8.67663 -8.11309 -7.94949 -6.21389 -4.26608 1.26052 1.47728 2.11888 2.31240 2.74020 3.22552 3.28227 3.29341 4.08495 4.34611 4.44442 4.61132 4.74537 4.79138 4.83365 4.86485 5.08183 5.14622 5.21743 5.32161 5.39695 5.45771 5.51476 5.59835 5.75041 5.86645 5.91483 5.93549 6.16003 6.36619 6.43029 6.53634 6.91702 7.06426 7.48336 7.54468 7.84366 8.14622 8.78229 8.93439 9.38389 10.89078 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.005045 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.016203 B = 5548.361904 C = 6884.386283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 N -0.471 5.471 4 C 0.205 3.795 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.443 3.557 14 N -0.358 5.358 15 N -0.044 5.044 16 N -0.103 5.103 17 N -0.373 5.373 18 C 0.136 3.864 19 C -0.120 4.120 20 C -0.081 4.081 21 S -0.260 6.260 22 C -0.122 4.122 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.017 0.983 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 5.734 -1.370 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 N -0.200 5.200 4 C 0.082 3.918 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.078 3.922 14 N -0.215 5.215 15 N -0.040 5.040 16 N -0.089 5.089 17 N -0.171 5.171 18 C 0.011 3.989 19 C -0.159 4.159 20 C -0.230 4.230 21 S -0.034 6.034 22 C -0.291 4.291 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.743 5.378 0.247 17.587 hybrid contribution 1.045 0.554 -2.135 2.441 sum -15.698 5.932 -1.889 16.887 Atomic orbital electron populations 1.21886 0.95983 1.01614 1.01201 1.22171 0.94321 0.86404 1.03592 1.59604 1.25633 1.18863 1.15862 1.19922 0.76734 0.98089 0.97086 1.20949 0.93339 1.45968 0.95604 0.91280 1.24974 0.95587 0.95108 0.98470 1.69954 0.98958 1.46985 1.36926 0.86470 0.77118 0.79288 0.84025 1.20093 1.21215 1.19983 1.23612 0.89203 0.86533 0.92889 1.74982 1.25057 1.24723 0.96719 1.77859 1.05560 0.98140 1.22429 1.82442 1.20603 1.20175 0.85702 1.51513 1.37210 1.20782 1.07580 1.21862 0.91390 0.94416 0.91196 1.21693 0.93278 1.01881 0.99059 1.23258 0.93934 1.02871 1.02905 1.86999 1.10133 1.57390 1.48923 1.23383 1.04660 1.01679 0.99330 0.94335 0.91745 0.91965 0.87503 0.93384 0.96508 0.95099 0.92432 0.88272 0.86475 0.89467 0.90108 0.89584 0.89015 0.90286 0.88118 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.30 37.15 0.35 -1.83 16 2 C 0.06 1.12 5.51 -3.82 -0.02 1.10 16 3 N -0.47 -9.39 4.43 -176.23 -0.78 -10.17 16 4 C 0.20 5.01 4.66 -4.98 -0.02 4.98 16 5 C -0.52 -13.20 8.29 -34.44 -0.29 -13.48 16 6 H 0.07 1.68 7.25 -52.49 -0.38 1.30 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 9 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.44 8.72 5.68 -320.42 -1.82 6.90 16 14 N -0.36 -7.69 11.86 30.10 0.36 -7.34 16 15 N -0.04 -0.90 13.38 60.35 0.81 -0.09 16 16 N -0.10 -1.90 13.93 60.35 0.84 -1.06 16 17 N -0.37 -6.34 3.69 -61.87 -0.23 -6.57 16 18 C 0.14 1.68 6.51 -4.05 -0.03 1.66 16 19 C -0.12 -1.30 5.55 -26.74 -0.15 -1.45 16 20 C -0.08 -0.71 5.94 37.16 0.22 -0.49 16 21 S -0.26 -2.57 22.38 -107.50 -2.41 -4.98 16 22 C -0.12 -0.82 10.76 101.05 1.09 0.27 16 23 H 0.04 0.58 7.26 -51.93 -0.38 0.20 16 24 H 0.06 0.89 7.89 -51.93 -0.41 0.49 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.11 1.99 6.59 -51.93 -0.34 1.64 16 27 H 0.05 0.90 7.77 -51.93 -0.40 0.50 16 28 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.03 0.82 8.05 -51.93 -0.42 0.41 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.12 1.47 8.10 -51.93 -0.42 1.05 16 33 H 0.09 1.08 6.80 -51.93 -0.35 0.72 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -29.62 342.73 -7.34 -36.96 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.04 Total: -1.80 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.77 Total: -0.81 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 1.73 Total: -49.60 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.41 Total: -4.98 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.62 -7.34 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332499475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.625 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds