Wall clock time and date at job start Tue Mar 31 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00461 * 2 1 4 4 C 1.52998 * 109.47151 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47284 * 65.00274 * 4 3 2 6 6 C 1.46502 * 120.00160 * 269.99973 * 5 4 3 7 7 C 1.50704 * 109.47000 * 270.00110 * 6 5 4 8 8 H 1.07992 * 119.99949 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99524 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00443 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99492 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46996 * 90.00304 * 11 9 7 13 13 H 1.48498 * 109.46896 * 209.99856 * 11 9 7 14 14 H 1.48494 * 109.47065 * 330.00312 * 11 9 7 15 15 C 1.34775 * 120.00235 * 89.99492 * 5 4 3 16 16 O 1.21286 * 120.00114 * 179.97438 * 15 5 4 17 17 C 1.50698 * 119.99943 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.47135 * 179.97438 * 17 15 5 19 19 H 1.08994 * 110.91153 * 57.12439 * 18 17 15 20 20 C 1.54263 * 110.84503 * 293.53931 * 18 17 15 21 21 O 1.45375 * 106.63218 * 226.61879 * 20 18 17 22 22 C 1.34005 * 111.49248 * 357.73052 * 21 20 18 23 23 O 1.20821 * 125.69237 * 199.61924 * 22 21 20 24 24 C 1.51659 * 108.60481 * 19.65569 * 22 21 20 25 25 H 1.08998 * 109.47539 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47327 * 300.00046 * 1 2 3 27 27 H 1.09004 * 109.46842 * 60.00061 * 1 2 3 28 28 H 1.08999 * 109.46575 * 59.99680 * 3 2 1 29 29 H 1.08999 * 109.46929 * 300.00197 * 3 2 1 30 30 H 1.08998 * 109.47205 * 304.99984 * 4 3 2 31 31 H 1.09001 * 109.46979 * 185.00518 * 4 3 2 32 32 H 1.09010 * 109.47044 * 29.99943 * 6 5 4 33 33 H 1.08993 * 109.47520 * 149.99654 * 6 5 4 34 34 H 0.97002 * 120.00399 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47339 * 59.99099 * 17 15 5 36 36 H 1.09008 * 109.46655 * 299.99597 * 17 15 5 37 37 H 1.09001 * 110.02578 * 107.32666 * 20 18 17 38 38 H 1.09004 * 110.03002 * 345.91271 * 20 18 17 39 39 H 1.08997 * 110.71383 * 89.85132 * 24 22 21 40 40 H 1.09005 * 110.70452 * 212.91899 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1063 -0.8927 -1.3403 7 6 5.5017 -1.2984 -0.9412 8 1 6.2202 -0.5464 -0.6504 9 6 5.8609 -2.6295 -0.9473 10 7 4.9860 -3.5451 -1.3019 11 14 7.5908 -3.1323 -0.4532 12 1 7.6345 -3.3836 1.0098 13 1 7.9731 -4.3698 -1.1796 14 1 8.5400 -2.0432 -0.7968 15 6 4.2634 1.3327 -2.3199 16 8 4.6291 0.8189 -3.3559 17 6 4.1306 2.8310 -2.2278 18 6 4.5140 3.4604 -3.5686 19 1 3.8990 3.0619 -4.3754 20 6 6.0130 3.2495 -3.8654 21 8 6.5354 4.5339 -4.3024 22 6 5.5711 5.4627 -4.3585 23 8 5.6220 6.4947 -4.9847 24 6 4.4057 5.0025 -3.5040 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5683 0.8427 31 1 3.9786 2.1763 0.0903 32 1 3.3857 -1.3633 -0.6713 33 1 3.9138 -1.2124 -2.3644 34 1 5.2388 -4.4816 -1.3065 35 1 4.7925 3.2072 -1.4477 36 1 3.0998 3.0902 -1.9859 37 1 6.1366 2.5082 -4.6549 38 1 6.5301 2.9239 -2.9628 39 1 4.5172 5.3540 -2.4783 40 1 3.4602 5.3431 -3.9261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333586911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:53 Heat of formation + Delta-G solvation = -164.729488 kcal Electronic energy + Delta-G solvation = -23252.938162 eV Core-core repulsion = 19647.264510 eV Total energy + Delta-G solvation = -3605.673651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05845 -39.29717 -37.71321 -37.39685 -35.03478 -34.19786 -32.68187 -29.75763 -29.18291 -27.72254 -26.48893 -25.95036 -22.98222 -22.78646 -21.47123 -20.95999 -18.46802 -17.47648 -16.88845 -16.72538 -16.47843 -16.17410 -16.05504 -15.57911 -15.13540 -15.01010 -14.46564 -14.30771 -13.97212 -13.68375 -13.37625 -13.00692 -12.65107 -12.29747 -12.11680 -12.00779 -11.87612 -11.73751 -11.48115 -11.32919 -11.18253 -10.94217 -10.86770 -10.50016 -10.42283 -10.24206 -10.15795 -9.63486 -9.52054 -9.01696 -8.40712 -7.72335 -6.02105 -4.06797 1.96775 3.23694 3.24215 3.30239 3.37369 3.40705 3.67885 3.86862 3.96072 4.18028 4.44250 4.51420 4.63471 4.97454 5.12544 5.14273 5.20220 5.27905 5.32561 5.37186 5.40730 5.44423 5.46716 5.50534 5.58783 5.64532 5.79136 5.81370 5.94689 6.13701 6.77212 7.14388 7.31942 7.37243 7.48538 7.55988 7.94571 8.25907 8.37046 8.85994 9.02017 9.57564 11.05886 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.005284 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.595775 B = 5297.633178 C = 7080.233477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.043 3.957 4 C 0.110 3.890 5 N -0.586 5.586 6 C 0.249 3.751 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.500 3.500 16 O -0.540 6.540 17 C -0.136 4.136 18 C -0.103 4.103 19 H 0.106 0.894 20 C 0.065 3.935 21 O -0.353 6.353 22 C 0.487 3.513 23 O -0.465 6.465 24 C -0.185 4.185 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 13.811 3.067 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.015 4.015 5 N -0.317 5.317 6 C 0.130 3.870 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.286 3.714 16 O -0.418 6.418 17 C -0.176 4.176 18 C -0.122 4.122 19 H 0.124 0.876 20 C -0.008 4.008 21 O -0.270 6.270 22 C 0.327 3.673 23 O -0.350 6.350 24 C -0.224 4.224 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.930 13.625 2.155 15.437 hybrid contribution 0.494 -0.247 0.571 0.795 sum -6.435 13.378 2.727 15.094 Atomic orbital electron populations 1.22706 0.81941 1.02693 0.99123 1.88111 1.18798 1.26846 1.95130 1.23110 0.95286 0.85555 0.99515 1.21544 0.91236 0.99024 0.89704 1.48192 1.63713 1.10048 1.09753 1.19331 0.96782 0.71935 0.98922 1.21434 0.97428 0.92204 1.45553 0.92668 1.24908 0.97321 0.96443 0.95308 1.69938 1.34355 1.01007 1.47834 0.86551 0.84670 0.78119 0.78362 1.20704 1.21152 1.19970 1.20230 0.78742 0.88124 0.84341 1.90682 1.46889 1.74920 1.29303 1.21831 1.03858 0.94739 0.97155 1.22217 0.97276 0.92961 0.99712 0.87580 1.24145 0.93008 0.80758 1.02913 1.86780 1.37922 1.22256 1.80000 1.23147 0.83175 0.82582 0.78357 1.90700 1.79472 1.23503 1.41286 1.23177 0.99928 0.96560 1.02715 0.89714 0.94632 0.94589 0.93022 0.93763 0.88856 0.90022 0.93647 0.94240 0.92794 0.88724 0.88685 0.87349 0.88367 0.86625 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.88 9.53 -35.23 -0.34 -6.21 16 3 C 0.04 0.54 6.28 37.16 0.23 0.77 16 4 C 0.11 1.55 5.62 -4.05 -0.02 1.52 16 5 N -0.59 -11.19 2.42 -175.06 -0.42 -11.61 16 6 C 0.25 6.27 4.98 -5.19 -0.03 6.25 16 7 C -0.53 -14.44 9.39 -34.44 -0.32 -14.77 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 11 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.50 8.82 7.44 -10.99 -0.08 8.74 16 16 O -0.54 -11.81 14.65 5.55 0.08 -11.73 16 17 C -0.14 -1.49 3.53 -27.88 -0.10 -1.59 16 18 C -0.10 -1.11 2.70 -89.05 -0.24 -1.35 16 19 H 0.11 1.21 8.06 -51.93 -0.42 0.79 16 20 C 0.07 0.83 6.47 37.82 0.24 1.08 16 21 O -0.35 -4.92 10.95 -38.28 -0.42 -5.34 16 22 C 0.49 6.36 8.62 36.48 0.31 6.68 16 23 O -0.46 -7.51 18.00 -18.37 -0.33 -7.84 16 24 C -0.19 -1.64 6.51 -26.50 -0.17 -1.81 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.50 7.30 -51.93 -0.38 0.12 16 30 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 31 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 32 H 0.05 1.21 7.12 -51.92 -0.37 0.84 16 33 H 0.04 1.14 7.42 -51.93 -0.39 0.75 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.09 0.85 7.36 -51.93 -0.38 0.47 16 36 H 0.09 0.81 7.26 -51.92 -0.38 0.43 16 37 H 0.11 1.50 7.99 -51.93 -0.41 1.09 16 38 H 0.10 1.25 7.72 -51.93 -0.40 0.84 16 39 H 0.12 0.77 7.91 -51.93 -0.41 0.36 16 40 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -34.96 337.18 -5.74 -40.70 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.95 Total: -2.63 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 0.84 Total: 8.65 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.31 Total: -37.14 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.00 Total: -31.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.96 -5.74 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333586911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.032 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds