Wall clock time and date at job start Tue Mar 31 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00461 * 2 1 4 4 C 1.52998 * 109.47151 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47284 * 65.00274 * 4 3 2 6 6 C 1.46502 * 120.00160 * 269.99973 * 5 4 3 7 7 C 1.50704 * 109.47000 * 270.00110 * 6 5 4 8 8 H 1.07992 * 119.99949 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99524 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00443 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99492 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46996 * 90.00304 * 11 9 7 13 13 H 1.48498 * 109.46896 * 209.99856 * 11 9 7 14 14 H 1.48494 * 109.47065 * 330.00312 * 11 9 7 15 15 C 1.34775 * 120.00235 * 89.99492 * 5 4 3 16 16 O 1.21286 * 120.00114 * 179.97438 * 15 5 4 17 17 C 1.50698 * 119.99943 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.47135 * 179.97438 * 17 15 5 19 19 H 1.08994 * 110.91153 * 57.12439 * 18 17 15 20 20 C 1.54263 * 110.84503 * 293.53931 * 18 17 15 21 21 O 1.45375 * 106.63218 * 226.61879 * 20 18 17 22 22 C 1.34005 * 111.49248 * 357.73052 * 21 20 18 23 23 O 1.20821 * 125.69237 * 199.61924 * 22 21 20 24 24 C 1.51659 * 108.60481 * 19.65569 * 22 21 20 25 25 H 1.08998 * 109.47539 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47327 * 300.00046 * 1 2 3 27 27 H 1.09004 * 109.46842 * 60.00061 * 1 2 3 28 28 H 1.08999 * 109.46575 * 59.99680 * 3 2 1 29 29 H 1.08999 * 109.46929 * 300.00197 * 3 2 1 30 30 H 1.08998 * 109.47205 * 304.99984 * 4 3 2 31 31 H 1.09001 * 109.46979 * 185.00518 * 4 3 2 32 32 H 1.09010 * 109.47044 * 29.99943 * 6 5 4 33 33 H 1.08993 * 109.47520 * 149.99654 * 6 5 4 34 34 H 0.97002 * 120.00399 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47339 * 59.99099 * 17 15 5 36 36 H 1.09008 * 109.46655 * 299.99597 * 17 15 5 37 37 H 1.09001 * 110.02578 * 107.32666 * 20 18 17 38 38 H 1.09004 * 110.03002 * 345.91271 * 20 18 17 39 39 H 1.08997 * 110.71383 * 89.85132 * 24 22 21 40 40 H 1.09005 * 110.70452 * 212.91899 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1063 -0.8927 -1.3403 7 6 5.5017 -1.2984 -0.9412 8 1 6.2202 -0.5464 -0.6504 9 6 5.8609 -2.6295 -0.9473 10 7 4.9860 -3.5451 -1.3019 11 14 7.5908 -3.1323 -0.4532 12 1 7.6345 -3.3836 1.0098 13 1 7.9731 -4.3698 -1.1796 14 1 8.5400 -2.0432 -0.7968 15 6 4.2634 1.3327 -2.3199 16 8 4.6291 0.8189 -3.3559 17 6 4.1306 2.8310 -2.2278 18 6 4.5140 3.4604 -3.5686 19 1 3.8990 3.0619 -4.3754 20 6 6.0130 3.2495 -3.8654 21 8 6.5354 4.5339 -4.3024 22 6 5.5711 5.4627 -4.3585 23 8 5.6220 6.4947 -4.9847 24 6 4.4057 5.0025 -3.5040 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5683 0.8427 31 1 3.9786 2.1763 0.0903 32 1 3.3857 -1.3633 -0.6713 33 1 3.9138 -1.2124 -2.3644 34 1 5.2388 -4.4816 -1.3065 35 1 4.7925 3.2072 -1.4477 36 1 3.0998 3.0902 -1.9859 37 1 6.1366 2.5082 -4.6549 38 1 6.5301 2.9239 -2.9628 39 1 4.5172 5.3540 -2.4783 40 1 3.4602 5.3431 -3.9261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333586911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:51 Heat of formation + Delta-G solvation = -189.463138 kcal Electronic energy + Delta-G solvation = -23254.010693 eV Core-core repulsion = 19647.264510 eV Total energy + Delta-G solvation = -3606.746183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07264 -40.63920 -38.78072 -38.51355 -36.50118 -35.25859 -34.66390 -31.15498 -30.18314 -28.99201 -27.84848 -27.03617 -24.79253 -23.86694 -22.40226 -22.08400 -19.76636 -18.64656 -18.41497 -17.99491 -17.78649 -17.28175 -17.07708 -16.85468 -16.57898 -16.18080 -15.93393 -15.45457 -15.25550 -14.68780 -14.49282 -14.29740 -14.08323 -13.53445 -13.40420 -13.27579 -12.97119 -12.89009 -12.73707 -12.68826 -12.52269 -12.35402 -12.14605 -12.13571 -11.83904 -11.62643 -11.46275 -11.27135 -10.58555 -10.50782 -10.42741 -9.32544 -8.15629 -6.29911 0.97920 1.38628 1.41247 1.50943 1.93080 2.25323 2.33701 2.48938 2.98794 3.04946 3.14646 3.26691 3.59179 3.72186 4.00014 4.24206 4.28179 4.38538 4.44666 4.48285 4.56648 4.58480 4.63545 4.68019 4.71812 4.76292 4.89580 4.91028 5.05663 5.11397 5.28089 5.36349 5.64401 5.80329 5.93933 6.15065 6.38285 6.42344 6.80017 6.93492 7.35853 7.58265 8.91100 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.005284 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.595775 B = 5297.633178 C = 7080.233477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.421 6.421 3 C 0.041 3.959 4 C 0.102 3.898 5 N -0.596 5.596 6 C 0.271 3.729 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.963 3.037 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.489 3.511 16 O -0.595 6.595 17 C -0.118 4.118 18 C -0.097 4.097 19 H 0.096 0.904 20 C 0.064 3.936 21 O -0.373 6.373 22 C 0.480 3.520 23 O -0.504 6.504 24 C -0.160 4.160 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.023 0.977 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.154 0.846 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 16.481 5.104 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.340 6.340 3 C -0.036 4.036 4 C -0.020 4.020 5 N -0.326 5.326 6 C 0.149 3.851 7 C -0.576 4.576 8 H 0.075 0.925 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.195 1.195 15 C 0.278 3.722 16 O -0.476 6.476 17 C -0.158 4.158 18 C -0.116 4.116 19 H 0.115 0.885 20 C -0.010 4.010 21 O -0.290 6.290 22 C 0.324 3.676 23 O -0.391 6.391 24 C -0.197 4.197 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.041 0.959 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.172 0.828 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.465 16.333 4.233 18.450 hybrid contribution 0.642 -1.092 -0.093 1.270 sum -6.823 15.241 4.140 17.204 Atomic orbital electron populations 1.22824 0.80201 1.02836 1.00848 1.88054 1.20995 1.29448 1.95543 1.23260 0.93537 0.84658 1.02101 1.21935 0.93153 1.00567 0.86353 1.48142 1.64338 1.07716 1.12396 1.18586 0.95181 0.76372 0.94924 1.21783 0.98412 0.92461 1.44961 0.92530 1.25834 1.01499 0.96621 0.95318 1.70077 1.36540 1.01338 1.49112 0.85479 0.79501 0.77562 0.78627 1.19119 1.21129 1.19455 1.21454 0.76926 0.90956 0.82838 1.90664 1.49002 1.76635 1.31338 1.21849 1.07274 0.88550 0.98090 1.22156 0.95259 0.94645 0.99580 0.88541 1.24104 0.94901 0.79890 1.02057 1.86753 1.39279 1.22823 1.80138 1.23891 0.84043 0.81704 0.77999 1.90679 1.80381 1.25087 1.42980 1.23151 0.98733 0.93993 1.03863 0.90605 0.92005 0.93570 0.89134 0.92085 0.91136 0.84815 0.95912 0.99403 0.92725 0.85212 0.84506 0.89708 0.88222 0.82848 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.42 -13.01 9.53 -148.98 -1.42 -14.43 16 3 C 0.04 0.88 6.28 71.98 0.45 1.33 16 4 C 0.10 2.60 5.62 86.38 0.49 3.09 16 5 N -0.60 -22.41 2.42 -826.16 -2.00 -24.41 16 6 C 0.27 14.27 4.98 85.63 0.43 14.70 16 7 C -0.54 -30.22 9.39 25.60 0.24 -29.98 16 8 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.01 0.33 5.46 84.66 0.46 0.79 16 10 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 11 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 C 0.49 16.70 7.44 87.66 0.65 17.36 16 16 O -0.59 -26.77 14.65 -3.05 -0.04 -26.82 16 17 C -0.12 -2.06 3.53 29.85 0.11 -1.96 16 18 C -0.10 -1.81 2.70 -9.78 -0.03 -1.84 16 19 H 0.10 2.03 8.06 -2.39 -0.02 2.01 16 20 C 0.06 1.58 6.47 72.41 0.47 2.05 16 21 O -0.37 -10.09 10.95 -49.64 -0.54 -10.64 16 22 C 0.48 11.62 8.62 71.54 0.62 12.24 16 23 O -0.50 -15.76 18.00 21.62 0.39 -15.37 16 24 C -0.16 -2.08 6.51 30.74 0.20 -1.88 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.08 7.30 -2.39 -0.02 1.06 16 30 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 31 H 0.13 1.94 6.44 -2.39 -0.02 1.93 16 32 H 0.02 1.29 7.12 -2.38 -0.02 1.27 16 33 H -0.01 -0.76 7.42 -2.39 -0.02 -0.77 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.13 1.47 7.36 -2.39 -0.02 1.45 16 36 H 0.14 1.38 7.26 -2.38 -0.02 1.36 16 37 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 38 H 0.10 2.41 7.72 -2.39 -0.02 2.39 16 39 H 0.15 0.96 7.91 -2.39 -0.02 0.94 16 40 H 0.14 1.23 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -83.97 337.18 5.06 -78.91 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.03 Total: 4.82 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 5.33 Total: 17.79 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.71 Total: -80.92 kcal Atomic # 8 Polarization: -65.63 SS G_CDS: -1.62 Total: -67.25 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -83.97 5.06 -78.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333586911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.554 kcal (2) G-P(sol) polarization free energy of solvation -83.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds