Wall clock time and date at job start Tue Mar 31 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46501 * 120.00500 * 270.00316 * 5 4 3 7 7 C 1.50697 * 109.46876 * 89.99832 * 6 5 4 8 8 H 1.07998 * 120.00699 * 0.02562 * 7 6 5 9 9 C 1.37887 * 119.99731 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99664 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46968 * 89.99965 * 11 9 7 13 13 H 1.48500 * 109.46974 * 209.99941 * 11 9 7 14 14 H 1.48503 * 109.46935 * 329.99924 * 11 9 7 15 15 C 1.34782 * 119.99674 * 89.99829 * 5 4 3 16 16 O 1.21279 * 120.00237 * 0.02562 * 15 5 4 17 17 C 1.50705 * 119.99756 * 179.97438 * 15 5 4 18 18 C 1.52999 * 109.46749 * 180.02562 * 17 15 5 19 19 H 1.09003 * 110.76820 * 308.52646 * 18 17 15 20 20 C 1.54570 * 110.87130 * 72.28045 * 18 17 15 21 21 O 1.45832 * 104.44465 * 145.00992 * 20 18 17 22 22 C 1.34061 * 109.90644 * 329.39591 * 21 20 18 23 23 O 1.20833 * 125.08966 * 200.83083 * 22 21 20 24 24 C 1.51327 * 109.81291 * 20.83296 * 22 21 20 25 25 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 26 26 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 31 31 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 32 32 H 1.08999 * 109.47005 * 210.00004 * 6 5 4 33 33 H 1.09004 * 109.46769 * 329.99860 * 6 5 4 34 34 H 0.97006 * 119.99618 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47376 * 300.00380 * 17 15 5 36 36 H 1.08999 * 109.46854 * 60.01103 * 17 15 5 37 37 H 1.09003 * 110.43782 * 263.75464 * 20 18 17 38 38 H 1.08999 * 110.44002 * 26.26676 * 20 18 17 39 39 H 1.08996 * 110.36525 * 238.84383 * 24 22 21 40 40 H 1.09002 * 110.36416 * 116.52207 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 2.7983 -1.4851 -1.8024 8 1 1.9556 -0.8415 -2.0074 9 6 2.6783 -2.8495 -1.9614 10 7 3.7047 -3.6332 -1.7123 11 14 1.0581 -3.5847 -2.5304 12 1 1.0427 -3.6607 -4.0133 13 1 0.9072 -4.9488 -1.9632 14 1 -0.0636 -2.7289 -2.0669 15 6 4.2615 1.3338 -2.3218 16 8 4.1546 2.5395 -2.2472 17 6 4.7149 0.6957 -3.6097 18 6 4.9715 1.7833 -4.6548 19 1 4.1132 2.4500 -4.7376 20 6 6.2580 2.5733 -4.3230 21 8 6.8361 2.8899 -5.6238 22 6 6.5284 1.9288 -6.5063 23 8 7.1280 1.7099 -7.5323 24 6 5.3177 1.1590 -6.0249 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.9786 2.1764 0.0890 31 1 3.8515 0.5681 0.8409 32 1 4.8894 -1.1436 -2.0569 33 1 4.3627 -1.2953 -0.3634 34 1 3.6204 -4.5931 -1.8245 35 1 5.6340 0.1367 -3.4343 36 1 3.9412 0.0188 -3.9718 37 1 6.0143 3.4876 -3.7819 38 1 6.9438 1.9571 -3.7415 39 1 5.5608 0.1028 -5.9101 40 1 4.4874 1.2848 -6.7198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333586912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:55 Heat of formation + Delta-G solvation = -165.220866 kcal Electronic energy + Delta-G solvation = -23624.350999 eV Core-core repulsion = 20018.656040 eV Total energy + Delta-G solvation = -3605.694959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93953 -39.31099 -37.47371 -37.11263 -34.98536 -34.08427 -32.57359 -30.21101 -28.52357 -27.18113 -26.82264 -25.57786 -22.95540 -22.66193 -21.20009 -20.98915 -18.46872 -17.25430 -16.81636 -16.59057 -16.42597 -16.08963 -15.58651 -15.50326 -14.93099 -14.73122 -14.42710 -14.25394 -13.70504 -13.50359 -13.44965 -12.86106 -12.39318 -12.31095 -12.04549 -11.86164 -11.59447 -11.51424 -11.41986 -11.11969 -10.99118 -10.87384 -10.84215 -10.54254 -10.44112 -10.14538 -10.06004 -9.65530 -9.24277 -8.92877 -8.48746 -7.81589 -6.10615 -4.10971 2.10302 3.20855 3.23468 3.32108 3.34315 3.35009 3.72367 4.05030 4.35488 4.37620 4.42074 4.70269 4.85509 5.24297 5.31068 5.33310 5.46721 5.53703 5.56808 5.61048 5.70580 5.70888 5.77848 5.80677 5.83535 6.03115 6.13933 6.16879 6.24845 6.27130 6.72268 6.80158 7.14154 7.46985 7.49071 7.76841 7.87315 8.12943 8.26505 8.78342 8.98575 9.52553 10.97837 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.005419 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.607897 B = 5165.752691 C = 6298.288688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.343 6.343 3 C 0.048 3.952 4 C 0.124 3.876 5 N -0.587 5.587 6 C 0.238 3.762 7 C -0.502 4.502 8 H 0.069 0.931 9 C 0.060 3.940 10 N -0.900 5.900 11 Si 0.892 3.108 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.515 3.485 16 O -0.581 6.581 17 C -0.128 4.128 18 C -0.104 4.104 19 H 0.105 0.895 20 C 0.062 3.938 21 O -0.352 6.352 22 C 0.485 3.515 23 O -0.468 6.468 24 C -0.186 4.186 25 H 0.027 0.973 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 8.152 0.357 8.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.261 6.261 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.316 5.316 6 C 0.119 3.881 7 C -0.540 4.540 8 H 0.087 0.913 9 C -0.141 4.141 10 N -0.541 5.541 11 Si 0.720 3.280 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.199 1.199 15 C 0.303 3.697 16 O -0.464 6.464 17 C -0.167 4.167 18 C -0.123 4.123 19 H 0.123 0.877 20 C -0.011 4.011 21 O -0.269 6.269 22 C 0.326 3.674 23 O -0.352 6.352 24 C -0.224 4.224 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.314 8.454 -0.077 8.461 hybrid contribution -1.426 -0.647 -0.077 1.568 sum -1.740 7.807 -0.154 8.000 Atomic orbital electron populations 1.22610 0.83208 1.02140 0.98348 1.88387 1.17540 1.25315 1.94811 1.22843 0.94958 0.86143 0.99124 1.21316 0.92253 0.98890 0.87528 1.48227 1.63163 1.09989 1.10254 1.19494 0.97766 0.72419 0.98430 1.21438 0.97370 0.91663 1.43569 0.91294 1.24881 0.96316 0.97075 0.95867 1.69919 1.30035 1.04424 1.49673 0.86608 0.84374 0.78412 0.78594 1.20946 1.21447 1.19920 1.20381 0.77313 0.86577 0.85412 1.90585 1.56674 1.14705 1.84398 1.21675 1.04750 0.97888 0.92429 1.22286 0.99189 0.97624 0.93162 0.87663 1.24345 0.93363 1.02614 0.80815 1.87000 1.71987 1.45232 1.22663 1.23200 0.83862 0.77773 0.82594 1.90693 1.56119 1.64849 1.23568 1.23009 0.98158 1.02769 0.98495 0.95467 0.95093 0.90147 0.93757 0.94075 0.89732 0.90235 0.94678 0.94694 0.92880 0.88628 0.86581 0.86291 0.89789 0.86412 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.34 -6.56 7.34 -35.23 -0.26 -6.81 16 3 C 0.05 0.78 6.28 37.16 0.23 1.02 16 4 C 0.12 2.06 5.86 -4.04 -0.02 2.03 16 5 N -0.59 -10.93 2.44 -175.06 -0.43 -11.36 16 6 C 0.24 5.17 4.92 -5.19 -0.03 5.15 16 7 C -0.50 -12.03 7.49 -34.44 -0.26 -12.29 16 8 H 0.07 1.70 6.56 -52.49 -0.34 1.36 16 9 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -24.06 13.29 55.43 0.74 -23.32 16 11 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 C 0.51 8.95 7.51 -10.98 -0.08 8.87 16 16 O -0.58 -10.67 14.71 5.56 0.08 -10.58 16 17 C -0.13 -1.87 3.56 -27.88 -0.10 -1.97 16 18 C -0.10 -1.29 2.74 -89.01 -0.24 -1.54 16 19 H 0.11 1.35 7.87 -51.93 -0.41 0.94 16 20 C 0.06 0.77 6.78 37.98 0.26 1.03 16 21 O -0.35 -5.02 11.05 -38.47 -0.43 -5.45 16 22 C 0.48 7.00 8.58 36.31 0.31 7.31 16 23 O -0.47 -8.20 18.00 -18.42 -0.33 -8.53 16 24 C -0.19 -2.16 6.52 -26.79 -0.17 -2.33 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 32 H 0.04 0.77 6.44 -51.93 -0.33 0.44 16 33 H 0.04 0.83 7.89 -51.93 -0.41 0.42 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.10 1.33 7.19 -51.93 -0.37 0.95 16 36 H 0.12 1.83 8.00 -51.93 -0.42 1.42 16 37 H 0.12 1.45 7.82 -51.93 -0.41 1.04 16 38 H 0.08 0.96 7.77 -51.93 -0.40 0.55 16 39 H 0.12 1.29 7.80 -51.93 -0.40 0.89 16 40 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -29.46 334.21 -5.67 -35.12 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.97 Total: 0.56 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 0.91 Total: 10.34 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.31 Total: -34.68 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.93 Total: -31.38 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.46 -5.67 -35.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333586912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.099 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds