Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46501 * 120.00500 * 270.00316 * 5 4 3 7 7 C 1.50697 * 109.46876 * 89.99832 * 6 5 4 8 8 H 1.07998 * 120.00699 * 0.02562 * 7 6 5 9 9 C 1.37887 * 119.99731 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99664 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46968 * 89.99965 * 11 9 7 13 13 H 1.48500 * 109.46974 * 209.99941 * 11 9 7 14 14 H 1.48503 * 109.46935 * 329.99924 * 11 9 7 15 15 C 1.34782 * 119.99674 * 89.99829 * 5 4 3 16 16 O 1.21279 * 120.00237 * 0.02562 * 15 5 4 17 17 C 1.50705 * 119.99756 * 179.97438 * 15 5 4 18 18 C 1.52999 * 109.46749 * 180.02562 * 17 15 5 19 19 H 1.09003 * 110.76820 * 308.52646 * 18 17 15 20 20 C 1.54570 * 110.87130 * 72.28045 * 18 17 15 21 21 O 1.45832 * 104.44465 * 145.00992 * 20 18 17 22 22 C 1.34061 * 109.90644 * 329.39591 * 21 20 18 23 23 O 1.20833 * 125.08966 * 200.83083 * 22 21 20 24 24 C 1.51327 * 109.81291 * 20.83296 * 22 21 20 25 25 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 26 26 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 31 31 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 32 32 H 1.08999 * 109.47005 * 210.00004 * 6 5 4 33 33 H 1.09004 * 109.46769 * 329.99860 * 6 5 4 34 34 H 0.97006 * 119.99618 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.47376 * 300.00380 * 17 15 5 36 36 H 1.08999 * 109.46854 * 60.01103 * 17 15 5 37 37 H 1.09003 * 110.43782 * 263.75464 * 20 18 17 38 38 H 1.08999 * 110.44002 * 26.26676 * 20 18 17 39 39 H 1.08996 * 110.36525 * 238.84383 * 24 22 21 40 40 H 1.09002 * 110.36416 * 116.52207 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 2.7983 -1.4851 -1.8024 8 1 1.9556 -0.8415 -2.0074 9 6 2.6783 -2.8495 -1.9614 10 7 3.7047 -3.6332 -1.7123 11 14 1.0581 -3.5847 -2.5304 12 1 1.0427 -3.6607 -4.0133 13 1 0.9072 -4.9488 -1.9632 14 1 -0.0636 -2.7289 -2.0669 15 6 4.2615 1.3338 -2.3218 16 8 4.1546 2.5395 -2.2472 17 6 4.7149 0.6957 -3.6097 18 6 4.9715 1.7833 -4.6548 19 1 4.1132 2.4500 -4.7376 20 6 6.2580 2.5733 -4.3230 21 8 6.8361 2.8899 -5.6238 22 6 6.5284 1.9288 -6.5063 23 8 7.1280 1.7099 -7.5323 24 6 5.3177 1.1590 -6.0249 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.9786 2.1764 0.0890 31 1 3.8515 0.5681 0.8409 32 1 4.8894 -1.1436 -2.0569 33 1 4.3627 -1.2953 -0.3634 34 1 3.6204 -4.5931 -1.8245 35 1 5.6340 0.1367 -3.4343 36 1 3.9412 0.0188 -3.9718 37 1 6.0143 3.4876 -3.7819 38 1 6.9438 1.9571 -3.7415 39 1 5.5608 0.1028 -5.9101 40 1 4.4874 1.2848 -6.7198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333586912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = -182.386318 kcal Electronic energy + Delta-G solvation = -23625.095349 eV Core-core repulsion = 20018.656040 eV Total energy + Delta-G solvation = -3606.439309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06526 -40.70291 -38.72823 -38.42030 -36.50109 -35.24072 -34.38818 -31.56916 -29.70182 -28.77270 -28.03877 -26.88302 -24.70913 -23.96549 -22.29667 -22.12330 -19.83655 -18.59297 -18.46183 -17.77914 -17.73065 -17.23794 -16.97857 -16.88412 -16.34634 -16.28859 -15.84250 -15.60129 -14.90007 -14.75753 -14.54759 -14.31028 -13.93024 -13.69244 -13.42657 -13.19612 -12.97137 -12.90180 -12.67408 -12.60507 -12.54028 -12.22474 -12.12179 -12.03717 -11.76480 -11.50858 -11.39222 -11.29391 -10.67072 -10.39378 -10.29117 -9.36464 -8.02725 -6.06871 0.97829 1.45281 1.49393 1.56345 1.82768 2.27807 2.36080 2.54999 2.99296 3.09073 3.30328 3.35025 3.63888 3.81649 4.06336 4.27106 4.28893 4.36021 4.45210 4.48610 4.57137 4.59265 4.60474 4.68477 4.72336 4.83628 4.90823 4.94508 4.99146 5.07168 5.18188 5.37010 5.73252 5.84852 5.95650 6.28062 6.36216 6.48882 6.72767 7.04287 7.40205 7.60485 9.04330 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.005419 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.607897 B = 5165.752691 C = 6298.288688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.051 3.949 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.254 3.746 7 C -0.488 4.488 8 H 0.063 0.937 9 C 0.015 3.985 10 N -0.933 5.933 11 Si 0.939 3.061 12 H -0.279 1.279 13 H -0.295 1.295 14 H -0.268 1.268 15 C 0.513 3.487 16 O -0.588 6.588 17 C -0.123 4.123 18 C -0.094 4.094 19 H 0.106 0.894 20 C 0.064 3.936 21 O -0.363 6.363 22 C 0.486 3.514 23 O -0.504 6.504 24 C -0.174 4.174 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 8.943 0.421 9.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.027 4.027 4 C -0.005 4.005 5 N -0.323 5.323 6 C 0.133 3.867 7 C -0.527 4.527 8 H 0.081 0.919 9 C -0.182 4.182 10 N -0.575 5.575 11 Si 0.767 3.233 12 H -0.205 1.205 13 H -0.221 1.221 14 H -0.192 1.192 15 C 0.302 3.698 16 O -0.471 6.471 17 C -0.162 4.162 18 C -0.113 4.113 19 H 0.124 0.876 20 C -0.009 4.009 21 O -0.280 6.280 22 C 0.329 3.671 23 O -0.392 6.392 24 C -0.211 4.211 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.146 0.854 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.203 9.282 0.000 9.360 hybrid contribution -1.165 -0.800 -0.023 1.413 sum -2.367 8.483 -0.023 8.807 Atomic orbital electron populations 1.22703 0.81802 1.02123 0.99903 1.88309 1.19309 1.26975 1.95091 1.22874 0.94500 0.85341 0.99970 1.21493 0.92752 0.99460 0.86777 1.48184 1.63820 1.08820 1.11507 1.19108 0.96661 0.74161 0.96803 1.21584 0.97854 0.91404 1.41883 0.91903 1.25463 0.98525 0.97721 0.96527 1.70013 1.31564 1.04387 1.51499 0.85845 0.81829 0.77397 0.78263 1.20516 1.22135 1.19234 1.20774 0.76731 0.86466 0.85791 1.90580 1.56894 1.14988 1.84612 1.21641 1.04697 0.98274 0.91583 1.22168 0.99303 0.96951 0.92895 0.87602 1.24433 0.93432 1.02984 0.80097 1.86985 1.72252 1.45450 1.23313 1.23575 0.84035 0.77515 0.81929 1.90675 1.57422 1.65981 1.25108 1.22978 0.97370 1.02680 0.98102 0.92606 0.94778 0.91000 0.94884 0.91047 0.88231 0.90175 0.94815 0.97016 0.93209 0.87758 0.87461 0.85971 0.88730 0.85372 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.38 -13.96 7.34 -148.98 -1.09 -15.05 16 3 C 0.05 1.58 6.28 71.98 0.45 2.03 16 4 C 0.12 3.76 5.86 86.38 0.51 4.26 16 5 N -0.59 -21.45 2.44 -826.15 -2.01 -23.47 16 6 C 0.25 10.90 4.92 85.63 0.42 11.33 16 7 C -0.49 -23.12 7.49 25.60 0.19 -22.93 16 8 H 0.06 3.04 6.56 -2.91 -0.02 3.02 16 9 C 0.02 0.76 5.46 84.66 0.46 1.23 16 10 N -0.93 -49.92 13.29 21.45 0.28 -49.64 16 11 Si 0.94 40.57 29.54 68.60 2.03 42.60 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 15 C 0.51 17.01 7.51 87.66 0.66 17.67 16 16 O -0.59 -20.41 14.71 -3.02 -0.04 -20.46 16 17 C -0.12 -3.37 3.56 29.85 0.11 -3.27 16 18 C -0.09 -2.15 2.74 -9.75 -0.03 -2.17 16 19 H 0.11 2.46 7.87 -2.39 -0.02 2.44 16 20 C 0.06 1.45 6.78 72.52 0.49 1.94 16 21 O -0.36 -9.87 11.05 -50.13 -0.55 -10.42 16 22 C 0.49 13.41 8.58 71.44 0.61 14.02 16 23 O -0.50 -17.40 18.00 21.62 0.39 -17.01 16 24 C -0.17 -3.64 6.52 30.56 0.20 -3.44 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.10 2.84 7.42 -2.39 -0.02 2.83 16 31 H 0.08 2.51 7.89 -2.39 -0.02 2.49 16 32 H 0.03 1.47 6.44 -2.39 -0.02 1.45 16 33 H 0.01 0.56 7.89 -2.38 -0.02 0.54 16 34 H 0.26 13.46 8.31 -92.70 -0.77 12.69 16 35 H 0.10 2.71 7.19 -2.39 -0.02 2.69 16 36 H 0.11 3.22 8.00 -2.39 -0.02 3.20 16 37 H 0.12 2.74 7.82 -2.39 -0.02 2.72 16 38 H 0.09 1.96 7.77 -2.39 -0.02 1.94 16 39 H 0.13 2.50 7.80 -2.39 -0.02 2.49 16 40 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -61.64 334.21 5.35 -56.29 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.03 Total: 14.30 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 5.32 Total: 22.86 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.73 Total: -73.10 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -1.30 Total: -62.94 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -61.64 5.35 -56.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333586912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.100 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds