Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81408 * 102.99982 * 2 1 4 4 C 1.52990 * 109.47167 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47413 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47439 * 179.97438 * 5 4 3 7 7 N 1.40586 * 127.38087 * 274.95369 * 6 5 4 8 8 N 1.28906 * 106.81608 * 180.02562 * 7 6 5 9 9 N 1.28426 * 110.31906 * 359.72371 * 8 7 6 10 10 C 1.31481 * 110.50209 * 0.46000 * 9 8 7 11 11 N 1.38382 * 126.43417 * 179.81677 * 10 9 8 12 12 C 1.46898 * 111.00010 * 302.42487 * 11 10 9 13 13 C 1.46898 * 111.00227 * 66.38007 * 11 10 9 14 14 H 1.09008 * 109.47320 * 54.99460 * 13 11 10 15 15 C 1.53002 * 109.47160 * 294.99800 * 13 11 10 16 16 C 1.50702 * 109.47385 * 174.99793 * 13 11 10 17 17 H 1.07998 * 119.99788 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99853 * 180.02562 * 16 13 11 19 19 N 1.31508 * 120.00180 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99511 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47162 * 59.99826 * 20 18 16 22 22 H 1.48499 * 109.46680 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47140 * 299.99818 * 20 18 16 24 24 H 1.09000 * 109.47431 * 59.99806 * 1 2 3 25 25 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47418 * 300.00439 * 1 2 3 27 27 H 1.08997 * 109.46888 * 59.99864 * 3 2 1 28 28 H 1.09001 * 109.46997 * 299.99936 * 3 2 1 29 29 H 1.08997 * 109.47304 * 59.99536 * 4 3 2 30 30 H 1.09001 * 109.47026 * 299.99815 * 4 3 2 31 31 H 1.08997 * 109.46909 * 59.99598 * 5 4 3 32 32 H 1.09001 * 109.46730 * 299.99821 * 5 4 3 33 33 H 1.09002 * 109.46837 * 177.88636 * 12 11 10 34 34 H 1.09002 * 109.47014 * 297.88411 * 12 11 10 35 35 H 1.08996 * 109.47288 * 57.88593 * 12 11 10 36 36 H 1.09000 * 109.47329 * 299.99881 * 15 13 11 37 37 H 1.09004 * 109.46871 * 59.99713 * 15 13 11 38 38 H 1.09009 * 109.47112 * 179.97438 * 15 13 11 39 39 H 0.97006 * 119.99969 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 6 4.0865 3.4308 0.0000 6 7 5.5421 3.5959 0.0000 7 7 6.4011 3.5958 1.1129 8 7 7.5959 3.7714 0.6619 9 7 7.5784 3.8762 -0.6180 10 6 6.3478 3.7818 -1.0711 11 7 5.9517 3.8531 -2.3951 12 6 6.3767 5.1205 -3.0042 13 6 6.4592 2.7056 -3.1590 14 1 6.1456 1.7801 -2.6759 15 6 7.9873 2.7621 -3.2094 16 6 5.9083 2.7522 -4.5610 17 1 5.2477 3.5542 -4.8552 18 6 6.2478 1.7708 -5.4680 19 7 7.0519 0.7938 -5.1095 20 14 5.5655 1.8290 -7.2060 21 1 5.9939 3.0894 -7.8640 22 1 6.0775 0.6682 -7.9777 23 1 4.0823 1.7752 -7.1575 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8031 2.2371 0.8900 28 1 1.8032 2.2372 -0.8900 29 1 4.1608 1.4705 -0.8908 30 1 4.1615 1.4704 0.8891 31 1 3.6679 3.8999 0.8904 32 1 3.6671 3.9008 -0.8896 33 1 6.0856 5.1344 -4.0545 34 1 5.9002 5.9514 -2.4839 35 1 7.4597 5.2160 -2.9260 36 1 8.3010 3.6875 -3.6924 37 1 8.3857 2.7284 -2.1953 38 1 8.3639 1.9103 -3.7759 39 1 7.2904 0.1032 -5.7476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333660937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = 127.545757 kcal Electronic energy + Delta-G solvation = -21007.140506 eV Core-core repulsion = 17921.479234 eV Total energy + Delta-G solvation = -3085.661272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.50393 -37.59306 -36.12895 -33.12292 -32.58982 -30.81956 -29.18323 -28.85275 -27.26736 -25.62364 -25.31501 -23.13375 -22.01652 -21.63757 -19.77418 -17.21555 -16.53306 -16.18388 -15.96865 -15.66858 -15.61046 -14.79099 -14.17797 -14.01939 -13.86319 -13.71531 -13.47413 -13.08054 -12.64064 -12.49812 -12.22153 -12.02422 -11.80547 -11.59826 -11.39915 -11.06557 -10.99094 -10.87875 -10.81920 -10.47990 -10.31394 -10.18466 -10.09537 -9.95277 -9.46012 -9.04092 -8.54491 -8.05315 -7.79478 -6.15497 -4.23143 1.32941 1.55644 2.15324 2.44685 2.77018 3.24300 3.30185 3.30930 4.15292 4.38964 4.50414 4.69810 4.82462 4.87944 4.92874 4.97237 5.14525 5.17055 5.25973 5.34031 5.49204 5.59239 5.72904 5.93455 5.97195 6.06268 6.14472 6.36459 6.51462 6.71168 6.88145 7.03134 7.25296 7.44784 7.59051 7.75450 8.12077 8.24553 8.78717 8.96959 9.42265 10.91179 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.006412 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.864806 B = 4365.582212 C = 6368.306501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.254 6.254 3 C -0.079 4.079 4 C -0.121 4.121 5 C 0.139 3.861 6 N -0.374 5.374 7 N -0.104 5.104 8 N -0.048 5.048 9 N -0.350 5.350 10 C 0.440 3.560 11 N -0.472 5.472 12 C 0.040 3.960 13 C 0.224 3.776 14 H 0.040 0.960 15 C -0.177 4.177 16 C -0.512 4.512 17 H 0.067 0.933 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.089 0.911 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 3.513 7.960 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.028 6.028 3 C -0.228 4.228 4 C -0.161 4.161 5 C 0.015 3.985 6 N -0.172 5.172 7 N -0.090 5.090 8 N -0.044 5.044 9 N -0.206 5.206 10 C 0.074 3.926 11 N -0.200 5.200 12 C -0.107 4.107 13 C 0.120 3.880 14 H 0.058 0.942 15 C -0.237 4.237 16 C -0.550 4.550 17 H 0.085 0.915 18 C -0.138 4.138 19 N -0.523 5.523 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.096 0.904 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.582 2.456 8.894 14.040 hybrid contribution -1.288 0.831 -1.477 2.129 sum -11.870 3.287 7.416 14.377 Atomic orbital electron populations 1.23379 0.94519 1.06489 1.04816 1.87192 1.06840 1.10718 1.98046 1.23220 0.99193 0.95075 1.05322 1.21666 0.93593 0.95394 1.05429 1.21822 0.73738 0.97583 1.05363 1.51547 1.09530 1.50972 1.05199 1.82436 0.95602 1.23788 1.07183 1.77865 1.13052 1.09474 1.03992 1.75116 1.18108 1.24600 1.02798 1.23704 0.84843 0.92732 0.91321 1.59827 1.58563 1.07595 0.93980 1.22342 0.99652 0.87514 1.01220 1.19499 0.91511 0.84755 0.92238 0.94240 1.22516 0.98560 1.02598 0.99993 1.20881 1.29353 1.10752 0.94056 0.91499 1.24897 0.94880 0.95092 0.98915 1.69884 1.34330 1.12624 1.35501 0.86497 0.79279 0.77606 0.83675 1.20128 1.21235 1.20144 0.90362 0.88128 0.90660 0.89816 0.89175 0.89039 0.90120 0.88417 0.86836 0.88451 0.93413 0.93590 0.94653 0.94513 0.89196 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.76 101.05 1.09 0.09 16 2 S -0.25 -3.05 22.38 -107.50 -2.41 -5.45 16 3 C -0.08 -0.80 5.94 37.15 0.22 -0.58 16 4 C -0.12 -1.54 5.55 -26.74 -0.15 -1.69 16 5 C 0.14 1.73 6.51 -4.04 -0.03 1.70 16 6 N -0.37 -6.39 3.69 -61.86 -0.23 -6.62 16 7 N -0.10 -1.92 13.93 60.35 0.84 -1.08 16 8 N -0.05 -0.98 13.38 60.35 0.81 -0.17 16 9 N -0.35 -7.42 9.61 30.10 0.29 -7.13 16 10 C 0.44 8.65 6.32 -320.41 -2.03 6.62 16 11 N -0.47 -9.42 4.73 -176.42 -0.83 -10.26 16 12 C 0.04 0.72 8.70 60.06 0.52 1.24 16 13 C 0.22 5.32 2.31 -68.86 -0.16 5.16 16 14 H 0.04 1.06 8.11 -51.92 -0.42 0.63 16 15 C -0.18 -4.29 8.19 37.16 0.30 -3.98 16 16 C -0.51 -12.78 7.85 -34.44 -0.27 -13.05 16 17 H 0.07 1.61 6.78 -52.49 -0.36 1.26 16 18 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 20 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.11 1.32 8.11 -51.93 -0.42 0.90 16 33 H 0.10 1.77 6.36 -51.93 -0.33 1.44 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.86 6.49 -51.93 -0.34 0.53 16 36 H 0.03 0.82 6.52 -51.93 -0.34 0.48 16 37 H 0.04 0.88 5.78 -51.93 -0.30 0.58 16 38 H 0.09 2.39 6.07 -51.92 -0.32 2.08 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -28.95 333.16 -7.25 -36.20 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.76 Total: 0.90 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.59 Total: -2.90 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 1.50 Total: -48.79 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.41 Total: -5.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.95 -7.25 -36.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333660937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.747 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds