Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81408 * 102.99982 * 2 1 4 4 C 1.52990 * 109.47167 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47413 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47439 * 179.97438 * 5 4 3 7 7 N 1.40586 * 127.38087 * 274.95369 * 6 5 4 8 8 N 1.28906 * 106.81608 * 180.02562 * 7 6 5 9 9 N 1.28426 * 110.31906 * 359.72371 * 8 7 6 10 10 C 1.31481 * 110.50209 * 0.46000 * 9 8 7 11 11 N 1.38382 * 126.43417 * 179.81677 * 10 9 8 12 12 C 1.46898 * 111.00010 * 302.42487 * 11 10 9 13 13 C 1.46898 * 111.00227 * 66.38007 * 11 10 9 14 14 H 1.09008 * 109.47320 * 54.99460 * 13 11 10 15 15 C 1.53002 * 109.47160 * 294.99800 * 13 11 10 16 16 C 1.50702 * 109.47385 * 174.99793 * 13 11 10 17 17 H 1.07998 * 119.99788 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99853 * 180.02562 * 16 13 11 19 19 N 1.31508 * 120.00180 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99511 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47162 * 59.99826 * 20 18 16 22 22 H 1.48499 * 109.46680 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47140 * 299.99818 * 20 18 16 24 24 H 1.09000 * 109.47431 * 59.99806 * 1 2 3 25 25 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47418 * 300.00439 * 1 2 3 27 27 H 1.08997 * 109.46888 * 59.99864 * 3 2 1 28 28 H 1.09001 * 109.46997 * 299.99936 * 3 2 1 29 29 H 1.08997 * 109.47304 * 59.99536 * 4 3 2 30 30 H 1.09001 * 109.47026 * 299.99815 * 4 3 2 31 31 H 1.08997 * 109.46909 * 59.99598 * 5 4 3 32 32 H 1.09001 * 109.46730 * 299.99821 * 5 4 3 33 33 H 1.09002 * 109.46837 * 177.88636 * 12 11 10 34 34 H 1.09002 * 109.47014 * 297.88411 * 12 11 10 35 35 H 1.08996 * 109.47288 * 57.88593 * 12 11 10 36 36 H 1.09000 * 109.47329 * 299.99881 * 15 13 11 37 37 H 1.09004 * 109.46871 * 59.99713 * 15 13 11 38 38 H 1.09009 * 109.47112 * 179.97438 * 15 13 11 39 39 H 0.97006 * 119.99969 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7422 1.9400 -0.0006 5 6 4.0865 3.4308 0.0000 6 7 5.5421 3.5959 0.0000 7 7 6.4011 3.5958 1.1129 8 7 7.5959 3.7714 0.6619 9 7 7.5784 3.8762 -0.6180 10 6 6.3478 3.7818 -1.0711 11 7 5.9517 3.8531 -2.3951 12 6 6.3767 5.1205 -3.0042 13 6 6.4592 2.7056 -3.1590 14 1 6.1456 1.7801 -2.6759 15 6 7.9873 2.7621 -3.2094 16 6 5.9083 2.7522 -4.5610 17 1 5.2477 3.5542 -4.8552 18 6 6.2478 1.7708 -5.4680 19 7 7.0519 0.7938 -5.1095 20 14 5.5655 1.8290 -7.2060 21 1 5.9939 3.0894 -7.8640 22 1 6.0775 0.6682 -7.9777 23 1 4.0823 1.7752 -7.1575 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8031 2.2371 0.8900 28 1 1.8032 2.2372 -0.8900 29 1 4.1608 1.4705 -0.8908 30 1 4.1615 1.4704 0.8891 31 1 3.6679 3.8999 0.8904 32 1 3.6671 3.9008 -0.8896 33 1 6.0856 5.1344 -4.0545 34 1 5.9002 5.9514 -2.4839 35 1 7.4597 5.2160 -2.9260 36 1 8.3010 3.6875 -3.6924 37 1 8.3857 2.7284 -2.1953 38 1 8.3639 1.9103 -3.7759 39 1 7.2904 0.1032 -5.7476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333660937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = 110.718015 kcal Electronic energy + Delta-G solvation = -21007.870212 eV Core-core repulsion = 17921.479234 eV Total energy + Delta-G solvation = -3086.390978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.03059 -39.27831 -37.32476 -34.97228 -33.86869 -32.44652 -30.68325 -29.83014 -28.41687 -27.31076 -27.12543 -24.46350 -23.68465 -22.85136 -21.43843 -18.61524 -18.23724 -17.82433 -17.30802 -16.94464 -16.64833 -16.56964 -15.55406 -15.30887 -15.03906 -14.76467 -14.55204 -14.43182 -14.10767 -13.81802 -13.46232 -13.28082 -13.13745 -13.05387 -12.89872 -12.77754 -12.69738 -12.58532 -12.17282 -12.11018 -12.04065 -11.86870 -11.40314 -11.07057 -10.96529 -10.91670 -10.51610 -9.74181 -8.72060 -8.13059 -6.26839 -0.10707 0.60606 0.87288 1.18825 1.49537 1.50273 1.57792 1.68551 2.41730 2.77182 3.18344 3.30669 3.64648 3.70347 3.88345 3.92020 4.22100 4.28860 4.36811 4.37628 4.42832 4.45544 4.54121 4.63903 4.65360 4.88254 4.90140 4.95676 4.97983 5.01680 5.09778 5.13307 5.44671 5.58629 5.67381 5.85399 6.15765 6.39480 6.82039 7.41985 7.43091 8.93647 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.006412 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.864806 B = 4365.582212 C = 6368.306501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 S -0.339 6.339 3 C -0.059 4.059 4 C -0.111 4.111 5 C 0.131 3.869 6 N -0.360 5.360 7 N -0.094 5.094 8 N -0.067 5.067 9 N -0.372 5.372 10 C 0.426 3.574 11 N -0.462 5.462 12 C 0.040 3.960 13 C 0.235 3.765 14 H 0.001 0.999 15 C -0.163 4.163 16 C -0.515 4.515 17 H 0.078 0.922 18 C 0.016 3.984 19 N -0.921 5.921 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.268 1.268 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.270 5.222 8.036 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 S -0.114 6.114 3 C -0.207 4.207 4 C -0.151 4.151 5 C 0.009 3.991 6 N -0.158 5.158 7 N -0.081 5.081 8 N -0.063 5.063 9 N -0.229 5.229 10 C 0.060 3.940 11 N -0.190 5.190 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.019 0.981 15 C -0.222 4.222 16 C -0.553 4.553 17 H 0.096 0.904 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.218 1.218 23 H -0.193 1.193 24 H 0.105 0.895 25 H 0.125 0.875 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.117 4.191 8.986 16.443 hybrid contribution -0.577 0.283 -1.404 1.543 sum -13.694 4.474 7.583 16.280 Atomic orbital electron populations 1.23403 0.90062 1.07441 1.06203 1.87519 1.11880 1.13688 1.98278 1.23141 0.96944 0.93234 1.07399 1.21513 0.95555 0.95173 1.02876 1.22322 0.71110 0.97618 1.08071 1.51799 1.10893 1.49162 1.03952 1.82341 0.95401 1.22709 1.07651 1.77849 1.13865 1.10766 1.03777 1.75002 1.19400 1.25209 1.03320 1.23610 0.85068 0.93796 0.91511 1.59708 1.58087 1.07214 0.93948 1.22418 0.99290 0.87362 1.01560 1.19131 0.90926 0.84826 0.92159 0.98072 1.22336 0.99073 1.01534 0.99263 1.21180 1.29016 1.10745 0.94397 0.90371 1.25722 0.95136 0.94770 1.02768 1.70041 1.35823 1.13436 1.36662 0.85490 0.78834 0.77594 0.79023 1.19023 1.21831 1.19286 0.89455 0.87450 0.88682 0.86585 0.88067 0.93158 0.91169 0.84373 0.85412 0.88462 0.90209 0.94706 0.94073 0.94857 0.91923 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.76 113.37 1.22 -0.20 16 2 S -0.34 -7.93 22.38 -56.49 -1.26 -9.20 16 3 C -0.06 -1.06 5.94 71.98 0.43 -0.64 16 4 C -0.11 -2.74 5.55 30.59 0.17 -2.57 16 5 C 0.13 2.92 6.51 86.38 0.56 3.48 16 6 N -0.36 -11.80 3.69 -349.63 -1.29 -13.09 16 7 N -0.09 -3.40 13.93 37.02 0.52 -2.88 16 8 N -0.07 -2.72 13.38 37.02 0.50 -2.22 16 9 N -0.37 -15.82 9.61 -58.69 -0.56 -16.38 16 10 C 0.43 16.55 6.32 260.65 1.65 18.20 16 11 N -0.46 -18.16 4.73 -712.08 -3.37 -21.52 16 12 C 0.04 1.39 8.70 127.69 1.11 2.50 16 13 C 0.24 11.35 2.31 44.17 0.10 11.45 16 14 H 0.00 0.08 8.11 -2.38 -0.02 0.06 16 15 C -0.16 -8.07 8.19 71.98 0.59 -7.48 16 16 C -0.52 -25.61 7.85 25.60 0.20 -25.41 16 17 H 0.08 3.65 6.78 -2.91 -0.02 3.63 16 18 C 0.02 0.81 5.30 84.66 0.45 1.26 16 19 N -0.92 -51.46 11.32 21.45 0.24 -51.21 16 20 Si 0.97 40.73 29.54 68.60 2.03 42.76 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.13 2.57 8.11 -2.39 -0.02 2.55 16 33 H 0.10 3.34 6.36 -2.39 -0.02 3.33 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.03 1.27 6.49 -2.39 -0.02 1.25 16 36 H 0.04 1.93 6.52 -2.39 -0.02 1.91 16 37 H 0.03 1.64 5.78 -2.38 -0.01 1.62 16 38 H 0.06 3.45 6.07 -2.38 -0.01 3.44 16 39 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -64.33 333.16 4.32 -60.01 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.04 Total: 13.16 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 6.48 Total: 0.59 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -3.97 Total: -107.32 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.26 Total: -9.20 kcal Total: -64.33 4.32 -60.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333660937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.731 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds