Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81397 * 102.99985 * 2 1 4 4 C 1.53001 * 109.47190 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47333 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47224 * 182.30926 * 5 4 3 7 7 N 1.40586 * 127.38047 * 277.39663 * 6 5 4 8 8 N 1.28916 * 106.81748 * 179.89092 * 7 6 5 9 9 N 1.28418 * 110.31056 * 0.38406 * 8 7 6 10 10 C 1.31473 * 110.51335 * 359.75011 * 9 8 7 11 11 N 1.38377 * 126.44085 * 180.02562 * 10 9 8 12 12 C 1.46901 * 110.99984 * 114.03527 * 11 10 9 13 13 C 1.46908 * 111.00123 * 350.08150 * 11 10 9 14 14 H 1.08993 * 109.46591 * 310.00265 * 13 11 10 15 15 C 1.53005 * 109.46720 * 70.00073 * 13 11 10 16 16 C 1.50701 * 109.47127 * 189.99884 * 13 11 10 17 17 H 1.08001 * 120.00131 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99961 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00425 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 119.99852 * 0.02562 * 18 16 13 21 21 H 1.48501 * 109.47200 * 89.99902 * 20 18 16 22 22 H 1.48497 * 109.46978 * 209.99904 * 20 18 16 23 23 H 1.48498 * 109.47319 * 329.99657 * 20 18 16 24 24 H 1.09003 * 109.47311 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.47289 * 59.99932 * 1 2 3 26 26 H 1.08994 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47102 * 59.99908 * 3 2 1 28 28 H 1.09003 * 109.47689 * 299.99951 * 3 2 1 29 29 H 1.08997 * 109.47470 * 300.00199 * 4 3 2 30 30 H 1.09006 * 109.47041 * 60.00033 * 4 3 2 31 31 H 1.09002 * 109.47527 * 302.31238 * 5 4 3 32 32 H 1.09008 * 109.46610 * 62.30861 * 5 4 3 33 33 H 1.09002 * 109.47360 * 66.12435 * 12 11 10 34 34 H 1.08998 * 109.46993 * 186.12102 * 12 11 10 35 35 H 1.08993 * 109.47214 * 306.12208 * 12 11 10 36 36 H 1.08996 * 109.46669 * 180.02562 * 15 13 11 37 37 H 1.08995 * 109.47072 * 299.99739 * 15 13 11 38 38 H 1.08997 * 109.47211 * 59.99802 * 15 13 11 39 39 H 0.96997 * 120.00371 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5411 3.5960 -0.0550 7 7 6.4476 3.5400 1.0180 8 7 7.6224 3.7357 0.5244 9 7 7.5481 3.9166 -0.7448 10 6 6.2992 3.8412 -1.1486 11 7 5.8454 3.9850 -2.4479 12 6 5.2819 2.7251 -2.9512 13 6 6.9156 4.4719 -3.3286 14 1 7.3871 5.3455 -2.8785 15 6 7.9599 3.3701 -3.5194 16 6 6.3329 4.8488 -4.6663 17 1 5.2735 4.7381 -4.8444 18 6 7.1523 5.3349 -5.6629 19 7 6.6440 5.6634 -6.8305 20 14 8.9849 5.5257 -5.3552 21 1 9.6838 4.2716 -5.7346 22 1 9.5092 6.6507 -6.1704 23 1 9.2186 5.8066 -3.9158 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8031 2.2371 0.8900 28 1 1.8032 2.2372 -0.8900 29 1 4.1609 1.4704 0.8908 30 1 4.1616 1.4702 -0.8892 31 1 3.6335 3.9079 -0.8690 32 1 3.7024 3.8926 0.9096 33 1 4.3810 2.4797 -2.3888 34 1 5.0328 2.8345 -4.0066 35 1 6.0138 1.9264 -2.8315 36 1 8.7542 3.7315 -4.1724 37 1 8.3814 3.0975 -2.5518 38 1 7.4884 2.4965 -3.9693 39 1 7.2205 6.0050 -7.5317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333660938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = 137.188962 kcal Electronic energy + Delta-G solvation = -20969.630506 eV Core-core repulsion = 17884.387395 eV Total energy + Delta-G solvation = -3085.243112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.62202 -38.02864 -36.36679 -33.15095 -32.65074 -31.06447 -29.82559 -29.35439 -27.55547 -25.87694 -25.24656 -23.26106 -22.51423 -21.49159 -19.84386 -17.53549 -16.84716 -16.31219 -16.15442 -16.06485 -15.72843 -15.11695 -14.37751 -14.18039 -14.00582 -13.80567 -13.78575 -13.35231 -12.84763 -12.63817 -12.50947 -12.39449 -12.15675 -11.99668 -11.78755 -11.62928 -11.18259 -11.11767 -10.66867 -10.55887 -10.41159 -10.23396 -10.11954 -9.99381 -9.54804 -9.26380 -8.72147 -8.14585 -8.03445 -6.21498 -4.23800 1.18359 1.41507 2.01617 2.22034 2.69475 3.23812 3.36154 3.40728 3.94674 4.26258 4.31255 4.45206 4.58002 4.62795 4.76464 4.79060 4.95142 5.04903 5.10914 5.14635 5.33325 5.35417 5.37076 5.64801 5.72910 5.78679 5.80154 6.06252 6.18866 6.31574 6.38170 6.44713 6.81992 6.88150 7.30537 7.32678 7.63888 8.36922 8.78531 8.91632 9.38124 10.90085 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019752 B = 0.004487 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.217533 B = 6239.437159 C = 7277.255763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.258 6.258 3 C -0.083 4.083 4 C -0.125 4.125 5 C 0.134 3.866 6 N -0.394 5.394 7 N -0.106 5.106 8 N -0.038 5.038 9 N -0.358 5.358 10 C 0.439 3.561 11 N -0.438 5.438 12 C 0.026 3.974 13 C 0.195 3.805 14 H 0.056 0.944 15 C -0.188 4.188 16 C -0.518 4.518 17 H 0.085 0.915 18 C 0.080 3.920 19 N -0.892 5.892 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.260 1.260 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 -8.788 12.247 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.032 6.032 3 C -0.232 4.232 4 C -0.165 4.165 5 C 0.009 3.991 6 N -0.193 5.193 7 N -0.093 5.093 8 N -0.034 5.034 9 N -0.217 5.217 10 C 0.074 3.926 11 N -0.162 5.162 12 C -0.120 4.120 13 C 0.090 3.910 14 H 0.073 0.927 15 C -0.247 4.247 16 C -0.556 4.556 17 H 0.103 0.897 18 C -0.124 4.124 19 N -0.529 5.529 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.185 1.185 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.421 -9.266 12.991 19.058 hybrid contribution -0.266 0.718 -0.532 0.932 sum -10.686 -8.549 12.459 18.507 Atomic orbital electron populations 1.23392 0.93999 1.06625 1.05053 1.87066 1.07466 1.10597 1.98092 1.23261 0.99000 0.95162 1.05751 1.21800 0.93773 0.95644 1.05255 1.21868 0.74134 0.97122 1.05943 1.51304 1.09201 1.53670 1.05174 1.82415 0.93895 1.24684 1.08318 1.77843 1.14485 1.08374 1.02664 1.75079 1.15106 1.27217 1.04263 1.23859 0.86069 0.92124 0.90589 1.59121 1.34165 1.27451 0.95463 1.22653 0.98033 0.87393 1.03967 1.19934 0.85506 0.93710 0.91889 0.92661 1.22846 1.00347 1.00494 1.01010 1.20753 0.96889 1.44414 0.93587 0.89677 1.24795 0.98548 0.94312 0.94718 1.69845 1.36024 1.43219 1.03770 0.86953 0.85760 0.77217 0.79086 1.20324 1.22204 1.18508 0.90456 0.90255 0.88024 0.89436 0.89131 0.89612 0.89687 0.86992 0.87906 0.92054 0.87142 0.94190 0.92977 0.92425 0.92867 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.76 101.05 1.09 0.36 16 2 S -0.26 -2.33 22.38 -107.50 -2.41 -4.73 16 3 C -0.08 -0.61 5.94 37.16 0.22 -0.39 16 4 C -0.13 -1.18 5.22 -26.73 -0.14 -1.32 16 5 C 0.13 1.41 5.68 -4.05 -0.02 1.39 16 6 N -0.39 -6.13 3.69 -61.86 -0.23 -6.36 16 7 N -0.11 -1.85 13.93 60.35 0.84 -1.01 16 8 N -0.04 -0.74 13.38 60.35 0.81 0.07 16 9 N -0.36 -7.42 9.32 30.09 0.28 -7.14 16 10 C 0.44 8.18 6.75 -320.42 -2.16 6.02 16 11 N -0.44 -8.38 4.66 -176.42 -0.82 -9.20 16 12 C 0.03 0.42 8.26 60.07 0.50 0.91 16 13 C 0.20 4.43 1.60 -68.86 -0.11 4.32 16 14 H 0.06 1.37 6.96 -51.93 -0.36 1.01 16 15 C -0.19 -4.08 7.89 37.16 0.29 -3.79 16 16 C -0.52 -13.39 8.40 -34.44 -0.29 -13.68 16 17 H 0.09 2.33 7.43 -52.49 -0.39 1.94 16 18 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 19 N -0.89 -25.70 13.96 55.43 0.77 -24.92 16 20 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 21 H -0.28 -6.53 6.87 56.52 0.39 -6.15 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 24 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.91 6.26 -51.93 -0.32 0.58 16 31 H 0.11 1.11 7.68 -51.93 -0.40 0.71 16 32 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.06 0.77 4.67 -51.93 -0.24 0.53 16 34 H 0.11 1.91 6.65 -51.93 -0.35 1.57 16 35 H 0.04 0.63 6.81 -51.93 -0.35 0.28 16 36 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 37 H 0.06 1.22 5.99 -51.93 -0.31 0.90 16 38 H 0.05 1.08 6.56 -51.93 -0.34 0.74 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -30.56 319.70 -6.18 -36.74 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.38 Total: -1.32 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.72 Total: -4.10 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 1.65 Total: -48.57 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.41 Total: -4.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.56 -6.18 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333660938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.925 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds