Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81397 * 102.99985 * 2 1 4 4 C 1.53001 * 109.47190 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47333 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47224 * 182.30926 * 5 4 3 7 7 N 1.40586 * 127.38047 * 277.39663 * 6 5 4 8 8 N 1.28916 * 106.81748 * 179.89092 * 7 6 5 9 9 N 1.28418 * 110.31056 * 0.38406 * 8 7 6 10 10 C 1.31473 * 110.51335 * 359.75011 * 9 8 7 11 11 N 1.38377 * 126.44085 * 180.02562 * 10 9 8 12 12 C 1.46901 * 110.99984 * 114.03527 * 11 10 9 13 13 C 1.46908 * 111.00123 * 350.08150 * 11 10 9 14 14 H 1.08993 * 109.46591 * 310.00265 * 13 11 10 15 15 C 1.53005 * 109.46720 * 70.00073 * 13 11 10 16 16 C 1.50701 * 109.47127 * 189.99884 * 13 11 10 17 17 H 1.08001 * 120.00131 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99961 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00425 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 119.99852 * 0.02562 * 18 16 13 21 21 H 1.48501 * 109.47200 * 89.99902 * 20 18 16 22 22 H 1.48497 * 109.46978 * 209.99904 * 20 18 16 23 23 H 1.48498 * 109.47319 * 329.99657 * 20 18 16 24 24 H 1.09003 * 109.47311 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.47289 * 59.99932 * 1 2 3 26 26 H 1.08994 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47102 * 59.99908 * 3 2 1 28 28 H 1.09003 * 109.47689 * 299.99951 * 3 2 1 29 29 H 1.08997 * 109.47470 * 300.00199 * 4 3 2 30 30 H 1.09006 * 109.47041 * 60.00033 * 4 3 2 31 31 H 1.09002 * 109.47527 * 302.31238 * 5 4 3 32 32 H 1.09008 * 109.46610 * 62.30861 * 5 4 3 33 33 H 1.09002 * 109.47360 * 66.12435 * 12 11 10 34 34 H 1.08998 * 109.46993 * 186.12102 * 12 11 10 35 35 H 1.08993 * 109.47214 * 306.12208 * 12 11 10 36 36 H 1.08996 * 109.46669 * 180.02562 * 15 13 11 37 37 H 1.08995 * 109.47072 * 299.99739 * 15 13 11 38 38 H 1.08997 * 109.47211 * 59.99802 * 15 13 11 39 39 H 0.96997 * 120.00371 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5411 3.5960 -0.0550 7 7 6.4476 3.5400 1.0180 8 7 7.6224 3.7357 0.5244 9 7 7.5481 3.9166 -0.7448 10 6 6.2992 3.8412 -1.1486 11 7 5.8454 3.9850 -2.4479 12 6 5.2819 2.7251 -2.9512 13 6 6.9156 4.4719 -3.3286 14 1 7.3871 5.3455 -2.8785 15 6 7.9599 3.3701 -3.5194 16 6 6.3329 4.8488 -4.6663 17 1 5.2735 4.7381 -4.8444 18 6 7.1523 5.3349 -5.6629 19 7 6.6440 5.6634 -6.8305 20 14 8.9849 5.5257 -5.3552 21 1 9.6838 4.2716 -5.7346 22 1 9.5092 6.6507 -6.1704 23 1 9.2186 5.8066 -3.9158 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8031 2.2371 0.8900 28 1 1.8032 2.2372 -0.8900 29 1 4.1609 1.4704 0.8908 30 1 4.1616 1.4702 -0.8892 31 1 3.6335 3.9079 -0.8690 32 1 3.7024 3.8926 0.9096 33 1 4.3810 2.4797 -2.3888 34 1 5.0328 2.8345 -4.0066 35 1 6.0138 1.9264 -2.8315 36 1 8.7542 3.7315 -4.1724 37 1 8.3814 3.0975 -2.5518 38 1 7.4884 2.4965 -3.9693 39 1 7.2205 6.0050 -7.5317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333660938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = 117.651291 kcal Electronic energy + Delta-G solvation = -20970.477723 eV Core-core repulsion = 17884.387395 eV Total energy + Delta-G solvation = -3086.090329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.04467 -39.59823 -37.41311 -34.92244 -33.89137 -32.66167 -31.48447 -29.82839 -28.56220 -27.33998 -27.06245 -24.43516 -23.97534 -22.60241 -21.47133 -18.95833 -18.40854 -17.74950 -17.49638 -17.07312 -16.73674 -16.71259 -15.57861 -15.53519 -15.06803 -14.84366 -14.59469 -14.43239 -14.32968 -14.14396 -13.77763 -13.56897 -13.36685 -13.22155 -13.12233 -12.89656 -12.77510 -12.46721 -12.18949 -11.95051 -11.86081 -11.64457 -11.48392 -11.34653 -11.15484 -10.92917 -10.78043 -9.68548 -8.69977 -8.31816 -6.35751 -0.04646 0.58120 0.86761 1.22047 1.30985 1.39764 1.48188 1.67274 2.30415 2.54500 3.03393 3.19477 3.56478 3.69510 3.82567 3.91777 4.09288 4.26936 4.31819 4.33206 4.37266 4.38423 4.39916 4.43438 4.53266 4.58008 4.63843 4.82428 4.89252 4.91810 4.92595 5.10101 5.11141 5.24153 5.48389 5.62300 5.92581 6.36335 6.68936 7.28542 7.47481 8.82809 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019752 B = 0.004487 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.217533 B = 6239.437159 C = 7277.255763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.322 6.322 3 C -0.068 4.068 4 C -0.115 4.115 5 C 0.123 3.877 6 N -0.375 5.375 7 N -0.096 5.096 8 N -0.058 5.058 9 N -0.387 5.387 10 C 0.430 3.570 11 N -0.440 5.440 12 C 0.027 3.973 13 C 0.203 3.797 14 H 0.034 0.966 15 C -0.181 4.181 16 C -0.507 4.507 17 H 0.064 0.936 18 C 0.034 3.966 19 N -0.933 5.933 20 Si 0.928 3.072 21 H -0.266 1.266 22 H -0.296 1.296 23 H -0.259 1.259 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.954 -9.344 13.654 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.096 6.096 3 C -0.216 4.216 4 C -0.155 4.155 5 C 0.000 4.000 6 N -0.175 5.175 7 N -0.083 5.083 8 N -0.054 5.054 9 N -0.246 5.246 10 C 0.064 3.936 11 N -0.163 5.163 12 C -0.119 4.119 13 C 0.096 3.904 14 H 0.052 0.948 15 C -0.240 4.240 16 C -0.546 4.546 17 H 0.082 0.918 18 C -0.165 4.165 19 N -0.572 5.572 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.224 1.224 23 H -0.184 1.184 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.693 -9.844 14.426 21.017 hybrid contribution -0.061 0.845 -0.871 1.214 sum -11.754 -9.000 13.555 20.072 Atomic orbital electron populations 1.23422 0.90683 1.07409 1.06095 1.87304 1.11243 1.12832 1.98271 1.23195 0.97321 0.93714 1.07400 1.21672 0.95274 0.94316 1.04214 1.22392 0.71185 0.98350 1.08037 1.51542 1.10562 1.51779 1.03604 1.82319 0.93780 1.23480 1.08769 1.77831 1.15357 1.09768 1.02437 1.74956 1.16698 1.28034 1.04936 1.23627 0.86200 0.93065 0.90743 1.59011 1.32843 1.29055 0.95386 1.22733 0.99404 0.86109 1.03615 1.19584 0.86462 0.93632 0.90729 0.94763 1.22738 0.99681 1.00374 1.01185 1.20916 0.95936 1.42936 0.94791 0.91801 1.25412 1.01975 0.94529 0.94633 1.69946 1.37369 1.45107 1.04775 0.86168 0.81943 0.77433 0.78816 1.19193 1.22391 1.18381 0.89138 0.89431 0.87437 0.87392 0.87868 0.90463 0.91012 0.85803 0.85037 0.88446 0.88597 0.94021 0.94002 0.91814 0.91760 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.76 113.37 1.22 0.22 16 2 S -0.32 -5.21 22.38 -56.49 -1.26 -6.48 16 3 C -0.07 -0.79 5.94 71.98 0.43 -0.36 16 4 C -0.12 -1.85 5.22 30.59 0.16 -1.69 16 5 C 0.12 2.18 5.68 86.38 0.49 2.67 16 6 N -0.37 -10.83 3.69 -349.63 -1.29 -12.12 16 7 N -0.10 -3.18 13.93 37.02 0.52 -2.66 16 8 N -0.06 -2.23 13.38 37.02 0.50 -1.73 16 9 N -0.39 -15.69 9.32 -58.70 -0.55 -16.23 16 10 C 0.43 15.39 6.75 260.65 1.76 17.15 16 11 N -0.44 -16.27 4.66 -712.08 -3.31 -19.59 16 12 C 0.03 0.83 8.26 127.69 1.06 1.88 16 13 C 0.20 9.11 1.60 44.17 0.07 9.18 16 14 H 0.03 1.70 6.96 -2.39 -0.02 1.68 16 15 C -0.18 -7.67 7.89 71.98 0.57 -7.10 16 16 C -0.51 -26.30 8.40 25.60 0.22 -26.09 16 17 H 0.06 3.53 7.43 -2.91 -0.02 3.51 16 18 C 0.03 1.87 5.45 84.65 0.46 2.33 16 19 N -0.93 -54.41 13.96 21.45 0.30 -54.11 16 20 Si 0.93 43.87 24.37 68.60 1.67 45.54 16 21 H -0.27 -12.02 6.87 99.48 0.68 -11.34 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.26 -12.11 6.53 99.48 0.65 -11.46 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.36 6.26 -2.38 -0.01 1.35 16 31 H 0.12 2.01 7.68 -2.39 -0.02 1.99 16 32 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.10 2.22 4.67 -2.39 -0.01 2.21 16 34 H 0.10 3.24 6.65 -2.39 -0.02 3.23 16 35 H 0.04 1.26 6.81 -2.39 -0.02 1.24 16 36 H 0.04 1.85 3.27 -2.39 -0.01 1.84 16 37 H 0.06 2.63 5.99 -2.39 -0.01 2.61 16 38 H 0.06 2.53 6.56 -2.39 -0.02 2.51 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -66.06 319.70 3.97 -62.08 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 0.98 Total: 7.12 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.43 Total: -1.82 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -3.84 Total: -106.45 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.54 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.26 Total: -6.48 kcal Total: -66.06 3.97 -62.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333660938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.732 kcal (2) G-P(sol) polarization free energy of solvation -66.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds