Wall clock time and date at job start Tue Mar 31 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99630 * 2 1 4 4 O 1.20829 * 120.00448 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99558 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46940 * 183.65456 * 5 3 2 7 7 C 1.37093 * 119.99978 * 94.35736 * 6 5 3 8 8 H 1.08006 * 120.00115 * 219.63197 * 7 6 5 9 9 C 1.38948 * 120.00131 * 39.63763 * 7 6 5 10 10 N 1.31415 * 119.99694 * 209.20259 * 9 7 6 11 11 Si 1.86796 * 120.00188 * 29.19799 * 9 7 6 12 12 H 1.48502 * 109.47073 * 95.88172 * 11 9 7 13 13 H 1.48498 * 109.47320 * 215.88081 * 11 9 7 14 14 H 1.48504 * 109.47087 * 335.88202 * 11 9 7 15 15 C 1.34773 * 119.99695 * 274.63068 * 6 5 3 16 16 O 1.21295 * 120.00326 * 359.72666 * 15 6 5 17 17 C 1.50704 * 119.99857 * 179.72643 * 15 6 5 18 18 H 1.08999 * 110.01934 * 59.29872 * 17 15 6 19 19 C 1.54263 * 110.02967 * 297.90410 * 17 15 6 20 20 C 1.54961 * 104.16203 * 217.13492 * 19 17 15 21 21 C 1.54886 * 102.77740 * 37.89438 * 20 19 17 22 22 C 1.53880 * 110.03070 * 180.69350 * 17 15 6 23 23 H 1.09000 * 110.03643 * 359.97438 * 22 17 15 24 24 O 1.42894 * 110.02799 * 238.56718 * 22 17 15 25 25 C 1.42905 * 114.00011 * 150.00037 * 24 22 17 26 26 H 1.09007 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46969 * 299.99394 * 1 2 3 28 28 H 1.08995 * 109.47567 * 59.99613 * 1 2 3 29 29 H 1.09001 * 109.46962 * 63.65669 * 5 3 2 30 30 H 1.09002 * 109.47663 * 303.64934 * 5 3 2 31 31 H 0.97008 * 119.99653 * 180.02562 * 10 9 7 32 32 H 1.08994 * 110.49036 * 335.78688 * 19 17 15 33 33 H 1.09005 * 110.48455 * 98.43077 * 19 17 15 34 34 H 1.08999 * 110.72628 * 279.57682 * 20 19 17 35 35 H 1.09000 * 110.92603 * 156.29915 * 20 19 17 36 36 H 1.08995 * 110.48974 * 203.40713 * 21 20 19 37 37 H 1.09001 * 110.48946 * 80.75740 * 21 20 19 38 38 H 1.08993 * 109.47120 * 300.00017 * 25 24 22 39 39 H 1.08997 * 109.47001 * 59.99941 * 25 24 22 40 40 H 1.09006 * 109.46984 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6770 0.0876 7 6 4.2672 3.2319 1.3083 8 1 3.9587 4.2436 1.5270 9 6 4.9534 2.4928 2.2641 10 7 4.7512 2.7227 3.5421 11 14 6.1632 1.1726 1.7325 12 1 7.5373 1.7357 1.7219 13 1 6.1025 0.0336 2.6834 14 1 5.8118 0.6989 0.3696 15 6 4.0783 3.4228 -1.0308 16 8 3.8258 2.9318 -2.1109 17 6 4.4998 4.8668 -0.9396 18 1 5.4879 4.9391 -0.4853 19 6 3.4755 5.6645 -0.1064 20 6 3.4009 7.0411 -0.8141 21 6 3.5011 6.6617 -2.3125 22 6 4.5164 5.5006 -2.3417 23 1 4.2201 4.7637 -3.0882 24 8 5.8223 5.9996 -2.6377 25 6 6.1516 5.9774 -4.0281 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.9526 0.8386 -0.9218 30 1 3.9594 0.7250 0.8546 31 1 5.2305 2.2069 4.2094 32 1 2.5029 5.1730 -0.1250 33 1 3.8257 5.7806 0.9193 34 1 4.2386 7.6726 -0.5186 35 1 2.4529 7.5361 -0.6036 36 1 3.8697 7.5055 -2.8958 37 1 2.5327 6.3311 -2.6880 38 1 6.1082 4.9521 -4.3954 39 1 5.4400 6.5915 -4.5799 40 1 7.1578 6.3721 -4.1695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337141488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:32 Heat of formation + Delta-G solvation = -153.047145 kcal Electronic energy + Delta-G solvation = -24265.020714 eV Core-core repulsion = 20659.853647 eV Total energy + Delta-G solvation = -3605.167067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.12126 -39.35579 -37.73136 -35.89084 -35.18760 -34.87734 -32.08931 -29.74646 -28.17351 -27.75460 -26.35232 -25.88146 -24.85063 -21.33728 -20.58821 -20.10535 -18.74809 -17.56000 -17.18302 -16.94966 -16.01207 -15.89513 -15.31023 -15.15835 -14.98175 -14.71960 -14.19712 -13.87239 -13.52981 -13.32174 -13.03217 -12.93687 -12.48450 -12.31858 -11.85726 -11.77047 -11.46711 -11.34199 -11.14268 -11.08474 -10.88101 -10.72608 -10.46716 -10.33623 -10.20625 -10.05852 -9.86120 -9.79788 -9.25454 -9.19830 -8.67222 -7.93515 -6.61283 -4.16954 2.87922 3.01796 3.04913 3.16700 3.24234 3.71765 3.94186 4.06197 4.46745 4.82288 5.01925 5.13264 5.37475 5.42857 5.45146 5.47751 5.54521 5.60322 5.74415 5.79886 5.83015 5.89852 5.91662 5.97460 6.02153 6.13236 6.15402 6.27141 6.38650 6.41759 6.52494 6.80353 6.86002 6.92325 7.14399 7.62827 7.93858 8.22019 8.41357 8.84375 9.19897 9.53102 10.48064 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.007149 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.324517 B = 3915.663610 C = 4737.703208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.448 3.552 4 O -0.492 6.492 5 C 0.122 3.878 6 N -0.444 5.444 7 C -0.361 4.361 8 H 0.118 0.882 9 C 0.073 3.927 10 N -0.839 5.839 11 Si 0.849 3.151 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.255 1.255 15 C 0.502 3.498 16 O -0.595 6.595 17 C -0.086 4.086 18 H 0.109 0.891 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.142 4.142 22 C 0.086 3.914 23 H 0.087 0.913 24 O -0.383 6.383 25 C 0.033 3.967 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.277 0.723 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.035 0.965 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 1.021 -7.440 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.288 3.712 4 O -0.376 6.376 5 C -0.004 4.004 6 N -0.164 5.164 7 C -0.487 4.487 8 H 0.135 0.865 9 C -0.136 4.136 10 N -0.472 5.472 11 Si 0.673 3.327 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.179 1.179 15 C 0.293 3.707 16 O -0.479 6.479 17 C -0.107 4.107 18 H 0.127 0.873 19 C -0.141 4.141 20 C -0.159 4.159 21 C -0.180 4.180 22 C 0.029 3.971 23 H 0.105 0.895 24 O -0.302 6.302 25 C -0.064 4.064 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.049 1.100 -7.581 7.930 hybrid contribution 0.283 -0.807 -0.091 0.861 sum -1.766 0.293 -7.673 7.878 Atomic orbital electron populations 1.23122 0.77667 1.02764 1.02191 1.86526 1.22593 1.34642 1.84952 1.24922 0.93036 0.81139 0.72063 1.90596 1.66673 1.36293 1.44088 1.21427 0.86094 0.88316 1.04521 1.43256 1.58039 1.07886 1.07182 1.19391 1.37922 1.02986 0.88357 0.86453 1.25399 0.96394 0.97253 0.94582 1.69898 1.36864 1.40050 1.00348 0.87367 0.83466 0.81762 0.80060 1.19740 1.20368 1.17907 1.20290 0.78826 0.88576 0.83045 1.90505 1.55208 1.73887 1.28347 1.21521 1.02356 0.91863 0.94940 0.87307 1.22339 0.98838 0.93661 0.99284 1.22508 1.01190 0.97621 0.94575 1.22823 0.99141 0.98291 0.97735 1.22823 0.82133 0.94648 0.97533 0.89514 1.87890 1.33587 1.84992 1.23744 1.22709 1.00249 1.00291 0.83133 0.88797 0.92205 0.92435 0.87478 0.87625 0.91309 0.91051 0.89578 0.91380 0.91931 0.91571 0.91219 0.94084 0.94610 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.90 10.57 -39.24 -0.41 -7.31 16 3 C 0.45 9.85 8.00 36.01 0.29 10.14 16 4 O -0.49 -12.00 16.03 -18.75 -0.30 -12.30 16 5 C 0.12 2.71 4.07 -5.19 -0.02 2.69 16 6 N -0.44 -10.62 1.66 -116.09 -0.19 -10.82 16 7 C -0.36 -9.08 8.73 -14.94 -0.13 -9.21 16 8 H 0.12 3.05 4.72 -52.48 -0.25 2.81 16 9 C 0.07 1.85 5.10 -17.47 -0.09 1.76 16 10 N -0.84 -22.19 13.96 55.50 0.77 -21.42 16 11 Si 0.85 18.79 26.25 -169.99 -4.46 14.33 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.25 -5.43 5.67 56.52 0.32 -5.11 16 15 C 0.50 11.77 6.68 -10.99 -0.07 11.69 16 16 O -0.59 -14.73 14.86 5.54 0.08 -14.65 16 17 C -0.09 -1.76 2.40 -90.65 -0.22 -1.97 16 18 H 0.11 2.29 7.90 -51.93 -0.41 1.88 16 19 C -0.10 -1.97 4.90 -25.04 -0.12 -2.10 16 20 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 21 C -0.14 -2.23 6.57 -25.07 -0.16 -2.39 16 22 C 0.09 1.58 2.98 -25.61 -0.08 1.50 16 23 H 0.09 1.71 6.05 -51.93 -0.31 1.40 16 24 O -0.38 -6.69 10.25 -35.23 -0.36 -7.05 16 25 C 0.03 0.45 10.85 101.05 1.10 1.54 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 29 H 0.11 2.25 7.54 -51.93 -0.39 1.85 16 30 H 0.11 2.27 4.53 -51.93 -0.24 2.04 16 31 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.07 1.50 7.85 -51.93 -0.41 1.09 16 33 H 0.09 1.69 6.40 -51.93 -0.33 1.36 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -30.11 325.80 -4.36 -34.47 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.78 Total: 6.68 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 1.38 Total: 13.16 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.58 Total: -32.23 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.99 Total: -41.32 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.46 Total: 14.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.11 -4.36 -34.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337141488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.579 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds