Wall clock time and date at job start Tue Mar 31 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00169 * 2 1 4 4 O 1.20829 * 120.00118 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00157 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.47203 * 180.02562 * 5 3 2 7 7 C 1.37093 * 120.00111 * 89.99858 * 6 5 3 8 8 H 1.07997 * 119.99691 * 167.28231 * 7 6 5 9 9 C 1.38948 * 119.99984 * 347.27889 * 7 6 5 10 10 N 1.31413 * 120.00151 * 338.53766 * 9 7 6 11 11 Si 1.86799 * 120.00018 * 158.53676 * 9 7 6 12 12 H 1.48500 * 109.47411 * 270.00169 * 11 9 7 13 13 H 1.48505 * 109.47009 * 29.99893 * 11 9 7 14 14 H 1.48501 * 109.47500 * 149.99977 * 11 9 7 15 15 C 1.34780 * 119.99557 * 269.99957 * 6 5 3 16 16 O 1.21289 * 120.00080 * 356.35838 * 15 6 5 17 17 C 1.50703 * 119.99731 * 176.36645 * 15 6 5 18 18 H 1.09000 * 110.01543 * 328.59343 * 17 15 6 19 19 C 1.53876 * 110.03306 * 89.98389 * 17 15 6 20 20 C 1.54260 * 106.59499 * 119.28548 * 19 17 15 21 21 C 1.54888 * 104.19835 * 23.61018 * 20 19 17 22 22 C 1.54262 * 110.02934 * 207.15205 * 17 15 6 23 23 H 1.08997 * 110.48919 * 335.78104 * 22 17 15 24 24 O 1.42904 * 110.48787 * 98.42831 * 22 17 15 25 25 C 1.42902 * 113.99964 * 209.99998 * 24 22 17 26 26 H 1.08992 * 109.47073 * 300.00616 * 1 2 3 27 27 H 1.09003 * 109.46860 * 60.00007 * 1 2 3 28 28 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47415 * 59.99696 * 5 3 2 30 30 H 1.09001 * 109.47178 * 299.99368 * 5 3 2 31 31 H 0.96999 * 119.99761 * 176.41080 * 10 9 7 32 32 H 1.08998 * 110.03177 * 238.57112 * 19 17 15 33 33 H 1.08996 * 110.03286 * 359.97438 * 19 17 15 34 34 H 1.09007 * 110.48419 * 142.28949 * 20 19 17 35 35 H 1.08999 * 110.48587 * 264.79255 * 20 19 17 36 36 H 1.08992 * 110.75473 * 80.37365 * 21 20 19 37 37 H 1.09001 * 110.75174 * 203.73991 * 21 20 19 38 38 H 1.09001 * 109.46705 * 299.99483 * 25 24 22 39 39 H 1.08996 * 109.47218 * 59.99560 * 25 24 22 40 40 H 1.09002 * 109.47105 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1757 3.3368 1.1886 8 1 4.6737 4.2950 1.2004 9 6 3.7313 2.7700 2.3768 10 7 2.7857 1.8576 2.3564 11 14 4.4782 3.3048 4.0034 12 1 5.6462 2.4437 4.3187 13 1 4.9186 4.7195 3.9044 14 1 3.4635 3.1764 5.0800 15 6 4.1733 3.3262 -1.1660 16 8 4.0662 2.7276 -2.2154 17 6 4.5206 4.7926 -1.1668 18 1 4.0604 5.2855 -0.3105 19 6 6.0481 4.9725 -1.1205 20 6 6.4415 5.7319 -2.4043 21 6 5.1474 6.4762 -2.8171 22 6 4.0391 5.4489 -2.4772 23 1 3.9540 4.7038 -3.2682 24 8 2.7888 6.1106 -2.2752 25 6 1.9571 6.1489 -3.4366 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9565 0.7805 -0.8891 30 1 3.9557 0.7809 0.8909 31 1 2.5120 1.4244 3.1800 32 1 6.3291 5.5535 -0.2421 33 1 6.5382 3.9992 -1.0969 34 1 7.2410 6.4432 -2.1970 35 1 6.7467 5.0326 -3.1828 36 1 5.0223 7.3871 -2.2319 37 1 5.1536 6.6990 -3.8841 38 1 2.4750 6.6774 -4.2370 39 1 1.7343 5.1315 -3.7577 40 1 1.0274 6.6670 -3.2009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337141954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:36 Heat of formation + Delta-G solvation = -158.530228 kcal Electronic energy + Delta-G solvation = -24395.792398 eV Core-core repulsion = 20790.387567 eV Total energy + Delta-G solvation = -3605.404831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.69490 -38.92319 -37.47191 -35.57848 -35.12222 -34.51634 -31.56980 -29.51799 -27.93901 -27.81417 -26.15972 -25.63783 -24.61882 -21.17634 -20.43633 -19.82613 -18.97057 -17.21490 -16.80229 -16.49145 -15.80552 -15.38429 -15.16316 -15.01156 -14.68950 -14.37621 -14.16857 -13.76968 -13.56517 -12.98289 -12.81353 -12.40662 -12.27066 -12.11438 -11.68295 -11.42903 -11.28622 -11.23867 -10.98851 -10.84811 -10.77110 -10.75666 -10.50361 -10.43576 -10.28960 -9.85593 -9.74645 -9.52313 -9.08739 -8.96734 -8.51379 -7.97628 -6.49871 -3.96136 3.08920 3.19779 3.22771 3.48201 3.78008 3.98388 4.12985 4.18792 4.69973 4.92901 4.97563 5.17571 5.34594 5.58941 5.69388 5.73858 5.81728 5.82867 5.87473 5.90238 5.96436 5.99827 6.01537 6.05373 6.17519 6.23784 6.27803 6.41204 6.51522 6.55158 6.56811 6.68685 6.76185 7.36182 7.49500 7.61778 7.71555 8.24627 8.98550 9.20231 9.37288 9.76762 10.57525 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.007505 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.006898 B = 3730.062567 C = 4933.814549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.377 6.377 3 C 0.487 3.513 4 O -0.498 6.498 5 C 0.156 3.844 6 N -0.427 5.427 7 C -0.328 4.328 8 H 0.107 0.893 9 C 0.036 3.964 10 N -0.869 5.869 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.269 1.269 14 H -0.285 1.285 15 C 0.478 3.522 16 O -0.607 6.607 17 C -0.095 4.095 18 H 0.105 0.895 19 C -0.103 4.103 20 C -0.120 4.120 21 C -0.142 4.142 22 C 0.094 3.906 23 H 0.084 0.916 24 O -0.379 6.379 25 C 0.036 3.964 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.272 0.728 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 2.622 -5.031 6.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.328 3.672 4 O -0.383 6.383 5 C 0.031 3.969 6 N -0.144 5.144 7 C -0.455 4.455 8 H 0.124 0.876 9 C -0.168 4.168 10 N -0.508 5.508 11 Si 0.752 3.248 12 H -0.202 1.202 13 H -0.193 1.193 14 H -0.211 1.211 15 C 0.268 3.732 16 O -0.494 6.494 17 C -0.116 4.116 18 H 0.123 0.877 19 C -0.141 4.141 20 C -0.157 4.157 21 C -0.180 4.180 22 C 0.036 3.964 23 H 0.102 0.898 24 O -0.298 6.298 25 C -0.061 4.061 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.083 2.627 -5.177 6.168 hybrid contribution -0.183 0.155 0.902 0.933 sum 1.900 2.781 -4.275 5.443 Atomic orbital electron populations 1.22900 0.78878 1.01631 1.01563 1.86445 1.21538 1.35642 1.85859 1.23821 0.92153 0.80570 0.70655 1.90523 1.66396 1.36262 1.45097 1.20466 0.87425 0.85620 1.03430 1.43421 1.57102 1.08289 1.05617 1.19716 1.36895 1.06296 0.82555 0.87557 1.25182 0.94364 0.97363 0.99894 1.69777 1.24002 1.27799 1.29185 0.85939 0.78637 0.79242 0.80971 1.20223 1.19319 1.21074 1.19962 0.81534 0.88509 0.83208 1.90493 1.58722 1.68549 1.31632 1.21649 0.96461 0.94264 0.99251 0.87703 1.21928 0.93611 1.00805 0.97739 1.22256 0.96815 0.98768 0.97903 1.22932 0.95361 0.99074 1.00650 1.22996 0.82789 0.93027 0.97568 0.89786 1.87908 1.29355 1.77884 1.34615 1.22687 0.94480 1.00576 0.88393 0.92635 0.93322 0.89740 0.89903 0.86319 0.91736 0.91111 0.91253 0.91630 0.91545 0.90741 0.91914 0.94734 0.94046 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.56 101.05 1.07 1.88 16 2 O -0.38 -8.36 10.56 -39.24 -0.41 -8.78 16 3 C 0.49 12.38 5.91 36.01 0.21 12.60 16 4 O -0.50 -14.25 15.70 -18.75 -0.29 -14.54 16 5 C 0.16 3.82 5.28 -5.19 -0.03 3.79 16 6 N -0.43 -10.82 2.11 -116.09 -0.25 -11.07 16 7 C -0.33 -8.24 8.98 -14.94 -0.13 -8.38 16 8 H 0.11 2.53 6.13 -52.49 -0.32 2.21 16 9 C 0.04 0.90 4.94 -17.47 -0.09 0.82 16 10 N -0.87 -22.61 8.69 55.50 0.48 -22.13 16 11 Si 0.93 19.39 29.61 -169.99 -5.03 14.35 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.48 11.74 6.50 -10.98 -0.07 11.67 16 16 O -0.61 -15.92 15.20 5.55 0.08 -15.84 16 17 C -0.09 -1.98 2.15 -90.65 -0.19 -2.17 16 18 H 0.10 2.35 6.59 -51.93 -0.34 2.01 16 19 C -0.10 -1.74 6.24 -25.62 -0.16 -1.90 16 20 C -0.12 -1.69 6.83 -25.08 -0.17 -1.86 16 21 C -0.14 -2.12 6.62 -24.74 -0.16 -2.28 16 22 C 0.09 1.79 2.83 -25.08 -0.07 1.72 16 23 H 0.08 1.72 6.51 -51.93 -0.34 1.38 16 24 O -0.38 -7.48 10.41 -35.23 -0.37 -7.85 16 25 C 0.04 0.56 10.85 101.05 1.10 1.65 16 26 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 27 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.91 7.38 -51.93 -0.38 1.52 16 30 H 0.12 2.85 6.50 -51.93 -0.34 2.51 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.22 7.67 -51.93 -0.40 0.83 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.04 0.68 8.11 -51.93 -0.42 0.26 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -31.80 329.88 -5.42 -37.23 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.90 Total: 6.13 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 1.30 Total: 17.53 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.24 Total: -33.20 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.99 Total: -47.00 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.80 -5.42 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337141954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.304 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds