Wall clock time and date at job start Tue Mar 31 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00169 * 2 1 4 4 O 1.20829 * 120.00118 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00157 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.47203 * 180.02562 * 5 3 2 7 7 C 1.37093 * 120.00111 * 89.99858 * 6 5 3 8 8 H 1.07997 * 119.99691 * 167.28231 * 7 6 5 9 9 C 1.38948 * 119.99984 * 347.27889 * 7 6 5 10 10 N 1.31413 * 120.00151 * 338.53766 * 9 7 6 11 11 Si 1.86799 * 120.00018 * 158.53676 * 9 7 6 12 12 H 1.48500 * 109.47411 * 270.00169 * 11 9 7 13 13 H 1.48505 * 109.47009 * 29.99893 * 11 9 7 14 14 H 1.48501 * 109.47500 * 149.99977 * 11 9 7 15 15 C 1.34780 * 119.99557 * 269.99957 * 6 5 3 16 16 O 1.21289 * 120.00080 * 356.35838 * 15 6 5 17 17 C 1.50703 * 119.99731 * 176.36645 * 15 6 5 18 18 H 1.09000 * 110.01543 * 328.59343 * 17 15 6 19 19 C 1.53876 * 110.03306 * 89.98389 * 17 15 6 20 20 C 1.54260 * 106.59499 * 119.28548 * 19 17 15 21 21 C 1.54888 * 104.19835 * 23.61018 * 20 19 17 22 22 C 1.54262 * 110.02934 * 207.15205 * 17 15 6 23 23 H 1.08997 * 110.48919 * 335.78104 * 22 17 15 24 24 O 1.42904 * 110.48787 * 98.42831 * 22 17 15 25 25 C 1.42902 * 113.99964 * 209.99998 * 24 22 17 26 26 H 1.08992 * 109.47073 * 300.00616 * 1 2 3 27 27 H 1.09003 * 109.46860 * 60.00007 * 1 2 3 28 28 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47415 * 59.99696 * 5 3 2 30 30 H 1.09001 * 109.47178 * 299.99368 * 5 3 2 31 31 H 0.96999 * 119.99761 * 176.41080 * 10 9 7 32 32 H 1.08998 * 110.03177 * 238.57112 * 19 17 15 33 33 H 1.08996 * 110.03286 * 359.97438 * 19 17 15 34 34 H 1.09007 * 110.48419 * 142.28949 * 20 19 17 35 35 H 1.08999 * 110.48587 * 264.79255 * 20 19 17 36 36 H 1.08992 * 110.75473 * 80.37365 * 21 20 19 37 37 H 1.09001 * 110.75174 * 203.73991 * 21 20 19 38 38 H 1.09001 * 109.46705 * 299.99483 * 25 24 22 39 39 H 1.08996 * 109.47218 * 59.99560 * 25 24 22 40 40 H 1.09002 * 109.47105 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1757 3.3368 1.1886 8 1 4.6737 4.2950 1.2004 9 6 3.7313 2.7700 2.3768 10 7 2.7857 1.8576 2.3564 11 14 4.4782 3.3048 4.0034 12 1 5.6462 2.4437 4.3187 13 1 4.9186 4.7195 3.9044 14 1 3.4635 3.1764 5.0800 15 6 4.1733 3.3262 -1.1660 16 8 4.0662 2.7276 -2.2154 17 6 4.5206 4.7926 -1.1668 18 1 4.0604 5.2855 -0.3105 19 6 6.0481 4.9725 -1.1205 20 6 6.4415 5.7319 -2.4043 21 6 5.1474 6.4762 -2.8171 22 6 4.0391 5.4489 -2.4772 23 1 3.9540 4.7038 -3.2682 24 8 2.7888 6.1106 -2.2752 25 6 1.9571 6.1489 -3.4366 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9565 0.7805 -0.8891 30 1 3.9557 0.7809 0.8909 31 1 2.5120 1.4244 3.1800 32 1 6.3291 5.5535 -0.2421 33 1 6.5382 3.9992 -1.0969 34 1 7.2410 6.4432 -2.1970 35 1 6.7467 5.0326 -3.1828 36 1 5.0223 7.3871 -2.2319 37 1 5.1536 6.6990 -3.8841 38 1 2.4750 6.6774 -4.2370 39 1 1.7343 5.1315 -3.7577 40 1 1.0274 6.6670 -3.2009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337141954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:35 Heat of formation + Delta-G solvation = -178.544654 kcal Electronic energy + Delta-G solvation = -24396.660289 eV Core-core repulsion = 20790.387567 eV Total energy + Delta-G solvation = -3606.272722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51640 -40.69199 -39.10811 -37.33355 -36.67994 -36.49023 -33.51082 -31.18541 -29.49372 -29.17885 -27.81260 -27.03412 -26.46508 -22.88263 -21.71634 -21.60752 -20.77194 -18.95707 -18.50265 -18.41999 -17.45957 -17.24082 -16.90688 -16.67475 -16.17248 -16.08260 -15.61235 -15.37469 -15.18572 -14.53554 -14.38115 -14.18319 -13.95443 -13.51825 -13.35954 -13.10689 -12.92405 -12.85941 -12.52552 -12.45646 -12.31246 -12.17827 -12.08277 -11.95709 -11.57391 -11.50988 -11.49940 -11.42149 -10.93946 -10.49439 -10.38309 -9.93147 -8.40054 -5.92803 1.40115 1.48177 1.59592 1.66667 1.81498 2.20657 2.35452 2.69632 3.01560 3.11226 3.61575 3.78596 4.02959 4.23149 4.33212 4.33645 4.36570 4.40628 4.42623 4.48131 4.55617 4.57803 4.62627 4.67790 4.73470 4.76425 4.79572 4.82523 5.03953 5.16703 5.20194 5.21981 5.42822 5.46509 5.60820 5.71094 6.30752 6.32535 7.05093 7.24328 7.45514 7.84917 8.67460 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.007505 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.006898 B = 3730.062567 C = 4933.814549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.377 6.377 3 C 0.489 3.511 4 O -0.539 6.539 5 C 0.153 3.847 6 N -0.438 5.438 7 C -0.345 4.345 8 H 0.115 0.885 9 C -0.006 4.006 10 N -0.896 5.896 11 Si 0.996 3.004 12 H -0.265 1.265 13 H -0.259 1.259 14 H -0.292 1.292 15 C 0.465 3.535 16 O -0.634 6.634 17 C -0.097 4.097 18 H 0.083 0.917 19 C -0.100 4.100 20 C -0.111 4.111 21 C -0.129 4.129 22 C 0.091 3.909 23 H 0.062 0.938 24 O -0.408 6.408 25 C 0.031 3.969 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.272 0.728 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.023 0.977 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 3.766 -4.947 7.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.294 6.294 3 C 0.332 3.668 4 O -0.427 6.427 5 C 0.028 3.972 6 N -0.155 5.155 7 C -0.472 4.472 8 H 0.133 0.867 9 C -0.207 4.207 10 N -0.535 5.535 11 Si 0.819 3.181 12 H -0.190 1.190 13 H -0.183 1.183 14 H -0.218 1.218 15 C 0.256 3.744 16 O -0.523 6.523 17 C -0.118 4.118 18 H 0.101 0.899 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.167 4.167 22 C 0.033 3.967 23 H 0.080 0.920 24 O -0.327 6.327 25 C -0.065 4.065 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.153 0.847 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.288 3.751 -5.104 7.137 hybrid contribution -0.698 -0.300 0.837 1.131 sum 2.590 3.452 -4.267 6.069 Atomic orbital electron populations 1.23266 0.76308 1.04780 1.01044 1.86412 1.24015 1.33834 1.85161 1.23954 0.92506 0.80777 0.69521 1.90489 1.67304 1.37686 1.47205 1.20520 0.87272 0.85868 1.03586 1.43671 1.57110 1.08614 1.06144 1.20067 1.37345 1.06970 0.82794 0.86737 1.26104 0.94283 0.97346 1.02996 1.69869 1.24924 1.28884 1.29850 0.84876 0.77657 0.79399 0.76133 1.19035 1.18303 1.21830 1.20730 0.80878 0.90108 0.82645 1.90452 1.59872 1.69562 1.32369 1.21737 0.99228 0.91286 0.99565 0.89854 1.21957 0.90463 1.01031 1.00341 1.22267 0.97396 0.99041 0.96135 1.22883 0.93483 0.97999 1.02339 1.23059 0.84051 0.93948 0.95679 0.91992 1.87855 1.30171 1.77869 1.36820 1.22876 0.95194 1.00208 0.88258 0.93765 0.93290 0.84725 0.89296 0.86297 0.91820 0.89445 0.92482 0.88138 0.91384 0.89790 0.89519 0.91671 0.95850 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.56 113.37 1.20 2.60 16 2 O -0.38 -16.83 10.56 -51.35 -0.54 -17.37 16 3 C 0.49 25.57 5.91 71.24 0.42 25.99 16 4 O -0.54 -31.86 15.70 21.96 0.34 -31.51 16 5 C 0.15 7.72 5.28 85.63 0.45 8.17 16 6 N -0.44 -22.86 2.11 -639.59 -1.35 -24.21 16 7 C -0.35 -17.61 8.98 84.04 0.75 -16.86 16 8 H 0.12 5.49 6.13 -2.91 -0.02 5.47 16 9 C -0.01 -0.30 4.94 84.93 0.42 0.11 16 10 N -0.90 -47.33 8.69 21.66 0.19 -47.14 16 11 Si 1.00 39.49 29.61 68.60 2.03 41.52 16 12 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 13 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 14 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 15 C 0.47 23.54 6.50 87.66 0.57 24.11 16 16 O -0.63 -34.41 15.20 -3.06 -0.05 -34.46 16 17 C -0.10 -4.07 2.15 -10.82 -0.02 -4.09 16 18 H 0.08 3.82 6.59 -2.39 -0.02 3.80 16 19 C -0.10 -3.26 6.24 31.32 0.20 -3.06 16 20 C -0.11 -2.81 6.83 31.67 0.22 -2.59 16 21 C -0.13 -3.50 6.62 31.88 0.21 -3.29 16 22 C 0.09 3.42 2.83 31.67 0.09 3.51 16 23 H 0.06 2.59 6.51 -2.39 -0.02 2.57 16 24 O -0.41 -16.11 10.41 -148.98 -1.55 -17.66 16 25 C 0.03 0.95 10.85 113.37 1.23 2.18 16 26 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 27 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 28 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.09 4.25 7.38 -2.39 -0.02 4.24 16 30 H 0.12 5.89 6.50 -2.39 -0.02 5.87 16 31 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 1.99 7.67 -2.39 -0.02 1.97 16 34 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.02 0.78 8.11 -2.39 -0.02 0.76 16 40 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -70.86 329.88 5.84 -65.02 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 1.04 Total: 29.05 kcal Atomic # 6 Polarization: 31.04 SS G_CDS: 5.73 Total: 36.77 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.16 Total: -71.35 kcal Atomic # 8 Polarization: -99.21 SS G_CDS: -1.80 Total: -101.00 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -70.86 5.84 -65.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337141954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.527 kcal (2) G-P(sol) polarization free energy of solvation -70.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds