Wall clock time and date at job start Tue Mar 31 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99942 * 2 1 4 4 O 1.20822 * 120.00189 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99449 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46881 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99848 * 270.00215 * 6 5 3 8 8 H 1.08000 * 119.99463 * 139.96780 * 7 6 5 9 9 C 1.38947 * 119.99883 * 319.96956 * 7 6 5 10 10 N 1.31411 * 119.99747 * 163.36200 * 9 7 6 11 11 Si 1.86791 * 120.00290 * 343.35785 * 9 7 6 12 12 H 1.48495 * 109.47259 * 95.48016 * 11 9 7 13 13 H 1.48500 * 109.47263 * 215.48213 * 11 9 7 14 14 H 1.48502 * 109.47304 * 335.48439 * 11 9 7 15 15 C 1.34773 * 120.00203 * 89.99641 * 6 5 3 16 16 O 1.21297 * 119.99525 * 5.51176 * 15 6 5 17 17 C 1.50699 * 120.00412 * 185.50069 * 15 6 5 18 18 H 1.09002 * 110.05132 * 28.68887 * 17 15 6 19 19 C 1.54372 * 110.06925 * 150.14521 * 17 15 6 20 20 C 1.54896 * 104.21547 * 142.85396 * 19 17 15 21 21 C 1.54893 * 102.74524 * 322.07641 * 20 19 17 22 22 C 1.53873 * 110.03799 * 267.27531 * 17 15 6 23 23 H 1.09001 * 110.03447 * 121.43035 * 22 17 15 24 24 O 1.42900 * 110.02896 * 0.04657 * 22 17 15 25 25 C 1.42898 * 114.00128 * 150.69476 * 24 22 17 26 26 H 1.08997 * 109.46774 * 59.99840 * 1 2 3 27 27 H 1.08997 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47125 * 299.99858 * 1 2 3 29 29 H 1.09003 * 109.47413 * 60.00588 * 5 3 2 30 30 H 1.08997 * 109.47747 * 299.99748 * 5 3 2 31 31 H 0.97000 * 120.00334 * 179.97438 * 10 9 7 32 32 H 1.09000 * 110.46356 * 24.17873 * 19 17 15 33 33 H 1.09000 * 110.60336 * 261.59929 * 19 17 15 34 34 H 1.08999 * 110.75423 * 203.76071 * 20 19 17 35 35 H 1.08996 * 110.75416 * 80.38796 * 20 19 17 36 36 H 1.08994 * 110.48578 * 279.26451 * 21 20 19 37 37 H 1.08998 * 110.48164 * 156.61940 * 21 20 19 38 38 H 1.08995 * 109.46985 * 300.00065 * 25 24 22 39 39 H 1.09002 * 109.47425 * 59.99712 * 25 24 22 40 40 H 1.09000 * 109.47510 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1766 3.3373 -1.1860 8 1 3.8521 4.3616 -1.2954 9 6 4.7913 2.6860 -2.2483 10 7 4.6917 3.1738 -3.4645 11 14 5.7595 1.1171 -1.9478 12 1 4.8897 -0.0585 -2.2056 13 1 6.9307 1.0758 -2.8598 14 1 6.2279 1.0867 -0.5389 15 6 4.1724 3.3257 1.1685 16 8 4.0979 2.7192 2.2163 17 6 4.4783 4.8013 1.1720 18 1 4.0320 5.2775 0.2990 19 6 3.9378 5.4512 2.4637 20 6 5.0063 6.5102 2.8325 21 6 6.3327 5.7999 2.4646 22 6 6.0008 5.0241 1.1732 23 1 6.2933 5.6085 0.3009 24 8 6.6795 3.7665 1.1695 25 6 7.9575 3.7976 0.5311 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9564 0.7805 -0.8892 30 1 3.9557 0.7809 0.8908 31 1 5.1211 2.7193 -4.2061 32 1 3.8482 4.7078 3.2557 33 1 2.9754 5.9286 2.2792 34 1 4.9727 6.7381 3.8979 35 1 4.8748 7.4147 2.2386 36 1 6.6298 5.1127 3.2567 37 1 7.1185 6.5320 2.2785 38 1 7.8369 4.1010 -0.5088 39 1 8.6031 4.5100 1.0448 40 1 8.4078 2.8058 0.5707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337141955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:39 Heat of formation + Delta-G solvation = -150.084051 kcal Electronic energy + Delta-G solvation = -24637.628582 eV Core-core repulsion = 21032.590004 eV Total energy + Delta-G solvation = -3605.038578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05925 -39.31205 -37.52482 -35.90841 -35.29323 -34.64386 -31.95338 -29.72136 -28.18112 -27.79836 -26.42425 -25.54279 -24.75561 -21.46071 -20.42881 -20.25541 -18.77462 -17.40720 -17.20216 -16.87091 -16.00960 -15.72534 -15.35880 -15.24198 -14.98889 -14.65633 -14.13804 -13.57813 -13.48669 -13.26257 -13.15836 -12.85278 -12.40908 -12.30726 -12.00913 -11.79907 -11.50048 -11.09773 -11.00058 -10.97592 -10.82321 -10.72782 -10.49754 -10.32515 -10.24344 -10.15872 -9.93033 -9.80092 -9.22775 -8.99765 -8.61058 -7.85263 -6.45642 -4.11307 2.87976 3.01620 3.06737 3.21562 3.30605 3.82239 4.10058 4.26011 4.41838 4.91697 4.96606 5.06203 5.35491 5.39127 5.46623 5.48354 5.60913 5.72608 5.75879 5.80275 5.81763 5.87091 5.95872 6.00207 6.02025 6.06468 6.09777 6.16885 6.24157 6.41732 6.48922 6.56975 6.82070 6.88254 7.28497 7.78075 8.06529 8.19823 8.43213 8.94717 9.31082 9.63803 10.64865 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.008299 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.225008 B = 3372.939803 C = 4477.077356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.448 3.552 4 O -0.490 6.490 5 C 0.111 3.889 6 N -0.453 5.453 7 C -0.329 4.329 8 H 0.105 0.895 9 C 0.065 3.935 10 N -0.865 5.865 11 Si 0.858 3.142 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.247 1.247 15 C 0.532 3.468 16 O -0.585 6.585 17 C -0.095 4.095 18 H 0.104 0.896 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.146 4.146 22 C 0.108 3.892 23 H 0.069 0.931 24 O -0.365 6.365 25 C 0.033 3.967 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.274 0.726 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 0.651 6.329 6.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.288 3.712 4 O -0.375 6.375 5 C -0.015 4.015 6 N -0.174 5.174 7 C -0.456 4.456 8 H 0.122 0.878 9 C -0.141 4.141 10 N -0.501 5.501 11 Si 0.686 3.314 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.171 1.171 15 C 0.322 3.678 16 O -0.467 6.467 17 C -0.116 4.116 18 H 0.122 0.878 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.184 4.184 22 C 0.049 3.951 23 H 0.087 0.913 24 O -0.283 6.283 25 C -0.063 4.063 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.028 0.482 6.712 6.808 hybrid contribution 0.383 -0.579 -0.587 0.909 sum 1.411 -0.097 6.125 6.287 Atomic orbital electron populations 1.23129 0.77665 1.02790 1.02215 1.86533 1.22600 1.34641 1.84932 1.24900 0.92960 0.81158 0.72164 1.90599 1.66624 1.36244 1.44031 1.21303 0.86471 0.89029 1.04670 1.43273 1.59396 1.08090 1.06676 1.18995 1.38798 0.99975 0.87866 0.87756 1.25316 0.95897 0.98111 0.94811 1.69712 1.41096 1.40654 0.98652 0.87178 0.80798 0.83125 0.80348 1.20029 1.21118 1.17079 1.19848 0.76313 0.88887 0.82712 1.90501 1.55499 1.68560 1.32187 1.21870 0.95097 0.94611 1.00071 0.87811 1.22388 0.97674 0.97855 0.97283 1.22384 0.94756 0.97818 1.00707 1.22915 0.97571 0.99055 0.98811 1.22538 0.90859 0.85099 0.96564 0.91310 1.88056 1.31002 1.30958 1.78253 1.22695 0.85446 1.01548 0.96658 0.92216 0.88772 0.92370 0.88256 0.86947 0.91551 0.89774 0.91692 0.91593 0.91577 0.90542 0.91940 0.93712 0.94928 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -7.12 10.57 -39.26 -0.41 -7.53 16 3 C 0.45 10.16 8.02 36.01 0.29 10.45 16 4 O -0.49 -12.25 16.18 -18.75 -0.30 -12.55 16 5 C 0.11 2.57 4.77 -5.19 -0.02 2.55 16 6 N -0.45 -11.25 1.65 -116.09 -0.19 -11.44 16 7 C -0.33 -8.61 9.11 -14.93 -0.14 -8.74 16 8 H 0.11 2.87 6.58 -52.49 -0.35 2.53 16 9 C 0.06 1.70 5.38 -17.47 -0.09 1.61 16 10 N -0.87 -23.75 13.96 55.50 0.77 -22.98 16 11 Si 0.86 19.87 24.77 -169.99 -4.21 15.66 16 12 H -0.27 -6.10 6.77 56.52 0.38 -5.72 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.25 -5.74 7.07 56.52 0.40 -5.34 16 15 C 0.53 12.78 5.38 -10.99 -0.06 12.72 16 16 O -0.58 -14.98 15.26 5.54 0.08 -14.89 16 17 C -0.10 -1.93 2.67 -90.60 -0.24 -2.17 16 18 H 0.10 2.14 6.32 -51.93 -0.33 1.81 16 19 C -0.11 -1.97 6.32 -25.01 -0.16 -2.12 16 20 C -0.12 -1.64 6.91 -24.73 -0.17 -1.81 16 21 C -0.15 -2.16 6.56 -25.07 -0.16 -2.32 16 22 C 0.11 1.96 3.35 -25.61 -0.09 1.88 16 23 H 0.07 1.19 7.81 -51.93 -0.41 0.78 16 24 O -0.36 -7.41 8.81 -35.23 -0.31 -7.72 16 25 C 0.03 0.55 10.85 101.05 1.10 1.65 16 26 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.10 2.29 3.17 -51.93 -0.16 2.13 16 30 H 0.11 2.48 7.35 -51.93 -0.38 2.10 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.08 1.60 6.87 -51.93 -0.36 1.25 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -31.87 327.83 -4.10 -35.96 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.78 Total: 5.26 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 1.32 Total: 15.29 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.58 Total: -34.42 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.94 Total: -42.70 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.21 Total: 15.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.87 -4.10 -35.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337141955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.122 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds