Wall clock time and date at job start Tue Mar 31 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99942 * 2 1 4 4 O 1.20822 * 120.00189 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99449 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46881 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99848 * 270.00215 * 6 5 3 8 8 H 1.08000 * 119.99463 * 139.96780 * 7 6 5 9 9 C 1.38947 * 119.99883 * 319.96956 * 7 6 5 10 10 N 1.31411 * 119.99747 * 163.36200 * 9 7 6 11 11 Si 1.86791 * 120.00290 * 343.35785 * 9 7 6 12 12 H 1.48495 * 109.47259 * 95.48016 * 11 9 7 13 13 H 1.48500 * 109.47263 * 215.48213 * 11 9 7 14 14 H 1.48502 * 109.47304 * 335.48439 * 11 9 7 15 15 C 1.34773 * 120.00203 * 89.99641 * 6 5 3 16 16 O 1.21297 * 119.99525 * 5.51176 * 15 6 5 17 17 C 1.50699 * 120.00412 * 185.50069 * 15 6 5 18 18 H 1.09002 * 110.05132 * 28.68887 * 17 15 6 19 19 C 1.54372 * 110.06925 * 150.14521 * 17 15 6 20 20 C 1.54896 * 104.21547 * 142.85396 * 19 17 15 21 21 C 1.54893 * 102.74524 * 322.07641 * 20 19 17 22 22 C 1.53873 * 110.03799 * 267.27531 * 17 15 6 23 23 H 1.09001 * 110.03447 * 121.43035 * 22 17 15 24 24 O 1.42900 * 110.02896 * 0.04657 * 22 17 15 25 25 C 1.42898 * 114.00128 * 150.69476 * 24 22 17 26 26 H 1.08997 * 109.46774 * 59.99840 * 1 2 3 27 27 H 1.08997 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47125 * 299.99858 * 1 2 3 29 29 H 1.09003 * 109.47413 * 60.00588 * 5 3 2 30 30 H 1.08997 * 109.47747 * 299.99748 * 5 3 2 31 31 H 0.97000 * 120.00334 * 179.97438 * 10 9 7 32 32 H 1.09000 * 110.46356 * 24.17873 * 19 17 15 33 33 H 1.09000 * 110.60336 * 261.59929 * 19 17 15 34 34 H 1.08999 * 110.75423 * 203.76071 * 20 19 17 35 35 H 1.08996 * 110.75416 * 80.38796 * 20 19 17 36 36 H 1.08994 * 110.48578 * 279.26451 * 21 20 19 37 37 H 1.08998 * 110.48164 * 156.61940 * 21 20 19 38 38 H 1.08995 * 109.46985 * 300.00065 * 25 24 22 39 39 H 1.09002 * 109.47425 * 59.99712 * 25 24 22 40 40 H 1.09000 * 109.47510 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1766 3.3373 -1.1860 8 1 3.8521 4.3616 -1.2954 9 6 4.7913 2.6860 -2.2483 10 7 4.6917 3.1738 -3.4645 11 14 5.7595 1.1171 -1.9478 12 1 4.8897 -0.0585 -2.2056 13 1 6.9307 1.0758 -2.8598 14 1 6.2279 1.0867 -0.5389 15 6 4.1724 3.3257 1.1685 16 8 4.0979 2.7192 2.2163 17 6 4.4783 4.8013 1.1720 18 1 4.0320 5.2775 0.2990 19 6 3.9378 5.4512 2.4637 20 6 5.0063 6.5102 2.8325 21 6 6.3327 5.7999 2.4646 22 6 6.0008 5.0241 1.1732 23 1 6.2933 5.6085 0.3009 24 8 6.6795 3.7665 1.1695 25 6 7.9575 3.7976 0.5311 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9564 0.7805 -0.8892 30 1 3.9557 0.7809 0.8908 31 1 5.1211 2.7193 -4.2061 32 1 3.8482 4.7078 3.2557 33 1 2.9754 5.9286 2.2792 34 1 4.9727 6.7381 3.8979 35 1 4.8748 7.4147 2.2386 36 1 6.6298 5.1127 3.2567 37 1 7.1185 6.5320 2.2785 38 1 7.8369 4.1010 -0.5088 39 1 8.6031 4.5100 1.0448 40 1 8.4078 2.8058 0.5707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337141955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:39 Heat of formation + Delta-G solvation = -170.931556 kcal Electronic energy + Delta-G solvation = -24638.532597 eV Core-core repulsion = 21032.590004 eV Total energy + Delta-G solvation = -3605.942593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.81226 -40.93726 -39.11456 -37.60329 -36.86449 -36.41634 -33.97609 -31.34723 -29.64138 -29.11145 -27.89224 -26.97177 -26.64357 -23.09825 -21.93875 -21.63597 -20.62239 -19.15577 -18.92141 -18.60274 -17.58584 -17.31557 -17.09066 -16.96729 -16.64864 -16.04238 -15.61718 -15.29200 -15.05126 -14.78708 -14.63355 -14.49374 -14.20726 -13.98698 -13.51411 -13.32545 -13.00196 -12.88606 -12.57088 -12.37586 -12.23627 -12.17095 -11.94330 -11.92192 -11.84460 -11.67808 -11.56888 -11.43862 -11.13490 -10.51090 -10.37584 -9.82756 -8.48895 -6.17710 1.07648 1.16462 1.29964 1.43695 1.47603 2.01932 2.16903 2.56064 2.89838 3.03256 3.65826 3.72304 3.82089 3.91371 4.02412 4.16146 4.28084 4.28944 4.33542 4.45427 4.50215 4.53457 4.61543 4.62346 4.64391 4.71963 4.82330 4.87646 5.04326 5.11908 5.19292 5.22129 5.27374 5.34421 5.50646 6.04407 6.16661 6.42563 6.68798 6.93786 7.34051 7.70776 8.64910 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.008299 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.225008 B = 3372.939803 C = 4477.077356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.522 6.522 5 C 0.102 3.898 6 N -0.463 5.463 7 C -0.325 4.325 8 H 0.079 0.921 9 C 0.030 3.970 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.257 1.257 13 H -0.277 1.277 14 H -0.251 1.251 15 C 0.526 3.474 16 O -0.606 6.606 17 C -0.104 4.104 18 H 0.089 0.911 19 C -0.113 4.113 20 C -0.107 4.107 21 C -0.136 4.136 22 C 0.104 3.896 23 H 0.072 0.928 24 O -0.399 6.399 25 C 0.030 3.970 26 H 0.057 0.943 27 H 0.141 0.859 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.279 0.721 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 0.429 7.226 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.292 3.708 4 O -0.409 6.409 5 C -0.023 4.023 6 N -0.185 5.185 7 C -0.453 4.453 8 H 0.097 0.903 9 C -0.173 4.173 10 N -0.538 5.538 11 Si 0.732 3.268 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.174 1.174 15 C 0.317 3.683 16 O -0.491 6.491 17 C -0.125 4.125 18 H 0.108 0.892 19 C -0.151 4.151 20 C -0.144 4.144 21 C -0.174 4.174 22 C 0.045 3.955 23 H 0.090 0.910 24 O -0.318 6.318 25 C -0.067 4.067 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.662 0.240 7.607 7.790 hybrid contribution 0.070 -0.559 -0.863 1.030 sum 1.732 -0.319 6.744 6.970 Atomic orbital electron populations 1.23576 0.74771 1.05941 1.02276 1.86495 1.25277 1.32385 1.84072 1.24682 0.92839 0.81683 0.71556 1.90582 1.67222 1.37455 1.45684 1.21366 0.87389 0.88415 1.05130 1.43361 1.59961 1.08677 1.06467 1.18776 1.38749 0.99277 0.88484 0.90348 1.25809 0.96339 1.00850 0.94340 1.69782 1.42247 1.42371 0.99431 0.86398 0.79944 0.80471 0.80020 1.18366 1.20284 1.17430 1.20514 0.75290 0.90350 0.82098 1.90467 1.56458 1.69489 1.32682 1.22023 0.97284 0.92107 1.01083 0.89240 1.22384 0.99380 0.98328 0.94992 1.22394 0.92386 0.97086 1.02558 1.22865 0.99012 0.99078 0.96433 1.22697 0.89118 0.84929 0.98716 0.90955 1.87996 1.32665 1.32355 1.78781 1.22838 0.84673 1.02850 0.96300 0.92425 0.84061 0.92153 0.88069 0.86065 0.91087 0.91884 0.90986 0.89218 0.89518 0.91413 0.88800 0.94711 0.91677 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.37 -13.60 10.57 -51.44 -0.54 -14.14 16 3 C 0.45 20.45 8.02 71.24 0.57 21.03 16 4 O -0.52 -26.46 16.18 21.98 0.36 -26.10 16 5 C 0.10 4.75 4.77 85.63 0.41 5.16 16 6 N -0.46 -23.41 1.65 -639.59 -1.05 -24.46 16 7 C -0.33 -17.47 9.11 84.04 0.77 -16.70 16 8 H 0.08 4.54 6.58 -2.91 -0.02 4.52 16 9 C 0.03 1.60 5.38 84.93 0.46 2.05 16 10 N -0.90 -50.13 13.96 21.66 0.30 -49.83 16 11 Si 0.91 40.73 24.77 68.60 1.70 42.43 16 12 H -0.26 -10.85 6.77 99.48 0.67 -10.18 16 13 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.25 -11.33 7.07 99.48 0.70 -10.63 16 15 C 0.53 25.73 5.38 87.66 0.47 26.20 16 16 O -0.61 -31.58 15.26 -3.08 -0.05 -31.62 16 17 C -0.10 -4.25 2.67 -10.78 -0.03 -4.28 16 18 H 0.09 3.85 6.32 -2.39 -0.02 3.83 16 19 C -0.11 -3.83 6.32 31.71 0.20 -3.63 16 20 C -0.11 -2.65 6.91 31.89 0.22 -2.43 16 21 C -0.14 -3.69 6.56 31.67 0.21 -3.48 16 22 C 0.10 3.70 3.35 31.32 0.10 3.80 16 23 H 0.07 2.46 7.81 -2.39 -0.02 2.44 16 24 O -0.40 -16.03 8.81 -148.98 -1.31 -17.34 16 25 C 0.03 0.94 10.85 113.37 1.23 2.17 16 26 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 27 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 29 H 0.10 4.62 3.17 -2.39 -0.01 4.61 16 30 H 0.12 5.35 7.35 -2.39 -0.02 5.33 16 31 H 0.28 14.45 8.31 -92.71 -0.77 13.67 16 32 H 0.06 2.41 6.87 -2.39 -0.02 2.39 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.03 1.15 8.10 -2.39 -0.02 1.13 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -70.04 327.83 6.21 -63.83 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 1.00 Total: 25.40 kcal Atomic # 6 Polarization: 26.03 SS G_CDS: 5.81 Total: 31.84 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -0.75 Total: -74.29 kcal Atomic # 8 Polarization: -87.66 SS G_CDS: -1.55 Total: -89.21 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.70 Total: 42.43 kcal Total: -70.04 6.21 -63.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337141955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.106 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds