Wall clock time and date at job start Tue Mar 31 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99645 * 2 1 4 4 O 1.20834 * 120.00337 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00243 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47254 * 180.02562 * 5 3 2 7 7 C 1.37108 * 119.99920 * 269.99821 * 6 5 3 8 8 H 1.08003 * 120.00191 * 203.12260 * 7 6 5 9 9 C 1.38947 * 119.99683 * 23.12302 * 7 6 5 10 10 N 1.31411 * 120.00159 * 351.18268 * 9 7 6 11 11 Si 1.86805 * 119.99880 * 171.18978 * 9 7 6 12 12 H 1.48498 * 109.47129 * 89.99492 * 11 9 7 13 13 H 1.48495 * 109.46827 * 209.99777 * 11 9 7 14 14 H 1.48501 * 109.46675 * 329.99888 * 11 9 7 15 15 C 1.34777 * 120.00149 * 90.00182 * 6 5 3 16 16 O 1.21284 * 120.00418 * 4.82586 * 15 6 5 17 17 C 1.50705 * 119.99708 * 184.82738 * 15 6 5 18 18 H 1.09003 * 110.05395 * 325.31271 * 17 15 6 19 19 C 1.54267 * 110.03012 * 203.90236 * 17 15 6 20 20 C 1.54891 * 104.19602 * 217.10716 * 19 17 15 21 21 C 1.54887 * 102.74700 * 37.93920 * 20 19 17 22 22 C 1.53870 * 110.03525 * 86.73521 * 17 15 6 23 23 H 1.08994 * 110.03561 * 238.56793 * 22 17 15 24 24 O 1.42905 * 110.03123 * 359.97438 * 22 17 15 25 25 C 1.42898 * 113.99668 * 209.99957 * 24 22 17 26 26 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47396 * 299.99581 * 1 2 3 28 28 H 1.08997 * 109.47374 * 60.00154 * 1 2 3 29 29 H 1.08996 * 109.46760 * 59.99824 * 5 3 2 30 30 H 1.08997 * 109.46692 * 300.00457 * 5 3 2 31 31 H 0.97000 * 119.99685 * 185.01102 * 10 9 7 32 32 H 1.09003 * 110.48641 * 335.78304 * 19 17 15 33 33 H 1.09002 * 110.49046 * 98.29321 * 19 17 15 34 34 H 1.09002 * 110.75895 * 156.25932 * 20 19 17 35 35 H 1.09010 * 110.75064 * 279.44093 * 20 19 17 36 36 H 1.09006 * 110.47994 * 203.37934 * 21 20 19 37 37 H 1.08993 * 110.48453 * 80.74149 * 21 20 19 38 38 H 1.08996 * 109.47368 * 60.00165 * 25 24 22 39 39 H 1.09001 * 109.46845 * 179.97438 * 25 24 22 40 40 H 1.08994 * 109.47232 * 299.99417 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.1763 3.3375 -1.1861 8 1 4.8163 4.2068 -1.2232 9 6 3.5504 2.8857 -2.3414 10 7 2.9145 1.7357 -2.3374 11 14 3.6130 3.9130 -3.9003 12 1 4.8075 3.5325 -4.6963 13 1 2.3865 3.6714 -4.7019 14 1 3.6948 5.3518 -3.5420 15 6 4.1721 3.3258 1.1685 16 8 4.0856 2.7222 2.2169 17 6 4.4929 4.7984 1.1712 18 1 5.1072 5.0487 0.3063 19 6 5.2322 5.1757 2.4715 20 6 4.6826 6.5795 2.8273 21 6 3.1873 6.4696 2.4385 22 6 3.1927 5.6211 1.1502 23 1 3.1760 6.2707 0.2751 24 8 2.0614 4.7482 1.1337 25 6 0.9209 5.2877 0.4627 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9563 0.7808 -0.8891 30 1 3.9556 0.7811 0.8908 31 1 2.5400 1.3858 -3.1609 32 1 4.9999 4.4632 3.2630 33 1 6.3080 5.2171 2.3005 34 1 4.7909 6.7779 3.8936 35 1 5.1819 7.3501 2.2398 36 1 2.7706 7.4577 2.2428 37 1 2.6248 5.9662 3.2246 38 1 1.1772 5.5016 -0.5749 39 1 0.1056 4.5649 0.4935 40 1 0.6099 6.2079 0.9572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337141956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:42 Heat of formation + Delta-G solvation = -150.318127 kcal Electronic energy + Delta-G solvation = -25189.139173 eV Core-core repulsion = 21584.090445 eV Total energy + Delta-G solvation = -3605.048728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.55503 -38.76792 -37.18763 -35.44831 -34.84169 -34.32738 -31.41702 -29.37742 -27.82356 -27.62929 -26.08662 -25.30038 -24.46691 -21.10742 -20.34543 -19.66375 -18.86076 -17.08977 -16.62916 -16.21947 -15.61183 -15.30960 -15.05830 -14.95430 -14.47959 -14.25788 -13.97198 -13.63288 -13.19604 -12.89074 -12.80373 -12.28002 -12.13438 -11.90172 -11.42200 -11.25846 -11.11298 -10.96468 -10.89405 -10.71957 -10.70157 -10.59462 -10.46734 -10.42083 -10.08794 -9.93826 -9.63125 -9.30414 -8.81837 -8.73126 -8.38654 -7.78718 -6.33745 -3.94528 3.10037 3.19162 3.21312 3.65594 3.91848 4.14179 4.21351 4.53963 4.84394 5.02005 5.04564 5.23516 5.43369 5.71134 5.79640 5.87644 5.90457 5.98908 5.99784 6.03500 6.05626 6.10351 6.15171 6.22772 6.31215 6.37287 6.47945 6.51199 6.56305 6.63260 6.71503 6.89178 7.04989 7.39655 7.67593 7.80901 8.07925 8.36316 9.09560 9.36656 9.53934 9.93773 10.68007 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.008708 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.469156 B = 3214.780141 C = 3952.794589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.378 6.378 3 C 0.484 3.516 4 O -0.495 6.495 5 C 0.158 3.842 6 N -0.431 5.431 7 C -0.316 4.316 8 H 0.097 0.903 9 C 0.043 3.957 10 N -0.885 5.885 11 Si 0.924 3.076 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.505 3.495 16 O -0.599 6.599 17 C -0.098 4.098 18 H 0.093 0.907 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.145 4.145 22 C 0.104 3.896 23 H 0.059 0.941 24 O -0.343 6.343 25 C 0.052 3.948 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.270 0.730 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 4.620 2.631 5.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.296 6.296 3 C 0.326 3.674 4 O -0.379 6.379 5 C 0.033 3.967 6 N -0.150 5.150 7 C -0.444 4.444 8 H 0.115 0.885 9 C -0.160 4.160 10 N -0.526 5.526 11 Si 0.751 3.249 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.294 3.706 16 O -0.484 6.484 17 C -0.119 4.119 18 H 0.111 0.889 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.183 4.183 22 C 0.045 3.955 23 H 0.077 0.923 24 O -0.260 6.260 25 C -0.045 4.045 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.725 4.356 3.068 5.377 hybrid contribution -0.504 0.859 -1.405 1.723 sum -1.228 5.215 1.662 5.610 Atomic orbital electron populations 1.22844 0.79379 1.01413 1.01225 1.86472 1.21093 1.36067 1.85939 1.23972 0.92372 0.80439 0.70657 1.90518 1.66322 1.35901 1.45191 1.20549 0.87135 0.85675 1.03370 1.43159 1.58434 1.08238 1.05141 1.19524 1.26798 1.12834 0.85200 0.88548 1.25180 0.94686 0.96346 0.99756 1.69617 1.36957 1.17892 1.28087 0.85973 0.77653 0.80073 0.81179 1.20479 1.20942 1.19663 1.19626 0.79985 0.87829 0.83188 1.90480 1.57758 1.68315 1.31833 1.21844 0.96161 0.94649 0.99230 0.88894 1.22353 0.98485 0.96578 0.97745 1.22380 0.95411 0.97387 1.00540 1.22912 0.97140 0.99227 0.99055 1.22474 0.86587 0.90498 0.95939 0.92261 1.88196 1.20556 1.41004 1.76268 1.22490 0.89540 0.97181 0.95336 0.89998 0.93413 0.93046 0.84922 0.91127 0.91911 0.89538 0.91996 0.91772 0.91859 0.92234 0.90644 0.94697 0.90348 0.96264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.56 101.05 1.07 1.90 16 2 O -0.38 -8.49 10.57 -39.25 -0.41 -8.91 16 3 C 0.48 12.23 5.91 36.01 0.21 12.44 16 4 O -0.50 -13.36 14.76 -22.26 -0.33 -13.68 16 5 C 0.16 3.94 5.28 -5.20 -0.03 3.91 16 6 N -0.43 -10.90 2.11 -116.10 -0.25 -11.15 16 7 C -0.32 -7.85 9.06 -14.93 -0.14 -7.98 16 8 H 0.10 2.25 5.99 -52.48 -0.31 1.94 16 9 C 0.04 1.06 5.41 -17.47 -0.09 0.96 16 10 N -0.88 -22.65 8.21 55.50 0.46 -22.20 16 11 Si 0.92 19.66 29.57 -169.99 -5.03 14.63 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 C 0.50 12.42 5.44 -10.98 -0.06 12.36 16 16 O -0.60 -16.12 15.12 5.55 0.08 -16.04 16 17 C -0.10 -1.98 2.64 -90.65 -0.24 -2.22 16 18 H 0.09 1.81 6.20 -51.93 -0.32 1.48 16 19 C -0.11 -1.96 6.30 -25.07 -0.16 -2.12 16 20 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 21 C -0.15 -2.32 6.56 -25.07 -0.16 -2.48 16 22 C 0.10 2.01 3.35 -25.62 -0.09 1.93 16 23 H 0.06 1.08 7.80 -51.93 -0.41 0.68 16 24 O -0.34 -7.73 7.96 -41.81 -0.33 -8.06 16 25 C 0.05 1.00 10.53 101.05 1.06 2.07 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.05 0.96 8.13 -51.93 -0.42 0.53 16 29 H 0.13 3.32 6.29 -51.93 -0.33 2.99 16 30 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 31 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 32 H 0.09 1.69 6.80 -51.93 -0.35 1.34 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 38 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -30.83 325.78 -5.57 -36.40 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.88 Total: 5.19 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 1.21 Total: 18.90 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.21 Total: -33.35 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.99 Total: -46.69 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.83 -5.57 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337141956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.916 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds