Wall clock time and date at job start Tue Mar 31 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99645 * 2 1 4 4 O 1.20834 * 120.00337 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00243 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47254 * 180.02562 * 5 3 2 7 7 C 1.37108 * 119.99920 * 269.99821 * 6 5 3 8 8 H 1.08003 * 120.00191 * 203.12260 * 7 6 5 9 9 C 1.38947 * 119.99683 * 23.12302 * 7 6 5 10 10 N 1.31411 * 120.00159 * 351.18268 * 9 7 6 11 11 Si 1.86805 * 119.99880 * 171.18978 * 9 7 6 12 12 H 1.48498 * 109.47129 * 89.99492 * 11 9 7 13 13 H 1.48495 * 109.46827 * 209.99777 * 11 9 7 14 14 H 1.48501 * 109.46675 * 329.99888 * 11 9 7 15 15 C 1.34777 * 120.00149 * 90.00182 * 6 5 3 16 16 O 1.21284 * 120.00418 * 4.82586 * 15 6 5 17 17 C 1.50705 * 119.99708 * 184.82738 * 15 6 5 18 18 H 1.09003 * 110.05395 * 325.31271 * 17 15 6 19 19 C 1.54267 * 110.03012 * 203.90236 * 17 15 6 20 20 C 1.54891 * 104.19602 * 217.10716 * 19 17 15 21 21 C 1.54887 * 102.74700 * 37.93920 * 20 19 17 22 22 C 1.53870 * 110.03525 * 86.73521 * 17 15 6 23 23 H 1.08994 * 110.03561 * 238.56793 * 22 17 15 24 24 O 1.42905 * 110.03123 * 359.97438 * 22 17 15 25 25 C 1.42898 * 113.99668 * 209.99957 * 24 22 17 26 26 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47396 * 299.99581 * 1 2 3 28 28 H 1.08997 * 109.47374 * 60.00154 * 1 2 3 29 29 H 1.08996 * 109.46760 * 59.99824 * 5 3 2 30 30 H 1.08997 * 109.46692 * 300.00457 * 5 3 2 31 31 H 0.97000 * 119.99685 * 185.01102 * 10 9 7 32 32 H 1.09003 * 110.48641 * 335.78304 * 19 17 15 33 33 H 1.09002 * 110.49046 * 98.29321 * 19 17 15 34 34 H 1.09002 * 110.75895 * 156.25932 * 20 19 17 35 35 H 1.09010 * 110.75064 * 279.44093 * 20 19 17 36 36 H 1.09006 * 110.47994 * 203.37934 * 21 20 19 37 37 H 1.08993 * 110.48453 * 80.74149 * 21 20 19 38 38 H 1.08996 * 109.47368 * 60.00165 * 25 24 22 39 39 H 1.09001 * 109.46845 * 179.97438 * 25 24 22 40 40 H 1.08994 * 109.47232 * 299.99417 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6799 0.0011 7 6 4.1763 3.3375 -1.1861 8 1 4.8163 4.2068 -1.2232 9 6 3.5504 2.8857 -2.3414 10 7 2.9145 1.7357 -2.3374 11 14 3.6130 3.9130 -3.9003 12 1 4.8075 3.5325 -4.6963 13 1 2.3865 3.6714 -4.7019 14 1 3.6948 5.3518 -3.5420 15 6 4.1721 3.3258 1.1685 16 8 4.0856 2.7222 2.2169 17 6 4.4929 4.7984 1.1712 18 1 5.1072 5.0487 0.3063 19 6 5.2322 5.1757 2.4715 20 6 4.6826 6.5795 2.8273 21 6 3.1873 6.4696 2.4385 22 6 3.1927 5.6211 1.1502 23 1 3.1760 6.2707 0.2751 24 8 2.0614 4.7482 1.1337 25 6 0.9209 5.2877 0.4627 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9563 0.7808 -0.8891 30 1 3.9556 0.7811 0.8908 31 1 2.5400 1.3858 -3.1609 32 1 4.9999 4.4632 3.2630 33 1 6.3080 5.2171 2.3005 34 1 4.7909 6.7779 3.8936 35 1 5.1819 7.3501 2.2398 36 1 2.7706 7.4577 2.2428 37 1 2.6248 5.9662 3.2246 38 1 1.1772 5.5016 -0.5749 39 1 0.1056 4.5649 0.4935 40 1 0.6099 6.2079 0.9572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337141956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:41 Heat of formation + Delta-G solvation = -168.725646 kcal Electronic energy + Delta-G solvation = -25189.937382 eV Core-core repulsion = 21584.090445 eV Total energy + Delta-G solvation = -3605.846938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35002 -40.53161 -38.89088 -37.23714 -36.47493 -36.22900 -33.34585 -31.03930 -29.41790 -29.03498 -27.76105 -26.86098 -26.31494 -22.80103 -21.64122 -21.45080 -20.66438 -18.78762 -18.46756 -18.07698 -17.30026 -17.09576 -16.75055 -16.67674 -16.06623 -15.90251 -15.64819 -15.16178 -14.84092 -14.49571 -14.45362 -14.05904 -13.88772 -13.34030 -13.17359 -12.96331 -12.81064 -12.64140 -12.50644 -12.26440 -12.16867 -12.13807 -12.09408 -11.88459 -11.49020 -11.44243 -11.41136 -11.20567 -10.75844 -10.29957 -10.24320 -9.74099 -8.23029 -5.88983 1.41702 1.46074 1.55284 1.83278 2.00338 2.31792 2.43800 2.94881 3.16354 3.23342 3.71341 3.80376 4.14419 4.33127 4.35996 4.40490 4.44496 4.48861 4.52388 4.55492 4.57944 4.66162 4.69345 4.77360 4.82294 4.87493 4.93886 5.04210 5.07783 5.17403 5.22613 5.32770 5.48441 5.55981 5.79933 5.90579 6.43186 6.59218 7.17719 7.43073 7.63717 8.03761 8.78450 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014352 B = 0.008708 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.469156 B = 3214.780141 C = 3952.794589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.483 3.517 4 O -0.517 6.517 5 C 0.156 3.844 6 N -0.440 5.440 7 C -0.328 4.328 8 H 0.110 0.890 9 C 0.001 3.999 10 N -0.906 5.906 11 Si 0.986 3.014 12 H -0.268 1.268 13 H -0.295 1.295 14 H -0.261 1.261 15 C 0.494 3.506 16 O -0.633 6.633 17 C -0.101 4.101 18 H 0.100 0.900 19 C -0.112 4.112 20 C -0.106 4.106 21 C -0.139 4.139 22 C 0.096 3.904 23 H 0.070 0.930 24 O -0.381 6.381 25 C 0.056 3.944 26 H 0.128 0.872 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.128 0.872 30 H 0.067 0.933 31 H 0.267 0.733 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 6.675 2.307 7.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.301 6.301 3 C 0.325 3.675 4 O -0.404 6.404 5 C 0.030 3.970 6 N -0.158 5.158 7 C -0.455 4.455 8 H 0.127 0.873 9 C -0.198 4.198 10 N -0.547 5.547 11 Si 0.811 3.189 12 H -0.194 1.194 13 H -0.221 1.221 14 H -0.185 1.185 15 C 0.285 3.715 16 O -0.521 6.521 17 C -0.122 4.122 18 H 0.118 0.882 19 C -0.150 4.150 20 C -0.144 4.144 21 C -0.176 4.176 22 C 0.037 3.963 23 H 0.088 0.912 24 O -0.299 6.299 25 C -0.040 4.040 26 H 0.146 0.854 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.390 6.407 2.744 6.981 hybrid contribution -0.656 0.103 -1.292 1.453 sum -1.047 6.510 1.451 6.752 Atomic orbital electron populations 1.23174 0.76758 1.04357 1.00811 1.86429 1.23632 1.34608 1.85440 1.23964 0.92525 0.80819 0.70176 1.90495 1.66833 1.36723 1.46335 1.20518 0.87497 0.86218 1.02764 1.43382 1.58369 1.08283 1.05794 1.19857 1.27277 1.13219 0.85171 0.87286 1.25964 0.94294 0.97110 1.02481 1.69729 1.37478 1.19021 1.28428 0.85014 0.77266 0.79077 0.77542 1.19377 1.22106 1.18520 1.20413 0.79147 0.89578 0.82397 1.90442 1.59248 1.69534 1.32872 1.21996 0.97522 0.91565 1.01149 0.88194 1.22343 0.99514 0.97925 0.95209 1.22383 0.93847 0.95808 1.02332 1.22863 0.98486 0.99694 0.96590 1.22747 0.85012 0.90337 0.98209 0.91176 1.88147 1.21974 1.43108 1.76719 1.22462 0.88461 0.98012 0.95112 0.85384 0.93427 0.93865 0.85491 0.91513 0.92278 0.92488 0.90023 0.89767 0.89049 0.89207 0.92501 0.95542 0.92075 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 10.56 113.37 1.20 2.72 16 2 O -0.38 -17.42 10.57 -51.38 -0.54 -17.96 16 3 C 0.48 25.01 5.91 71.24 0.42 25.43 16 4 O -0.52 -28.62 14.76 25.28 0.37 -28.25 16 5 C 0.16 8.01 5.28 85.64 0.45 8.47 16 6 N -0.44 -22.68 2.11 -639.61 -1.35 -24.03 16 7 C -0.33 -16.28 9.06 84.04 0.76 -15.52 16 8 H 0.11 4.99 5.99 -2.91 -0.02 4.98 16 9 C 0.00 0.06 5.41 84.93 0.46 0.52 16 10 N -0.91 -46.92 8.21 21.66 0.18 -46.74 16 11 Si 0.99 39.73 29.57 68.60 2.03 41.75 16 12 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 13 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 15 C 0.49 24.70 5.44 87.66 0.48 25.18 16 16 O -0.63 -35.20 15.12 -3.04 -0.05 -35.25 16 17 C -0.10 -4.02 2.64 -10.82 -0.03 -4.04 16 18 H 0.10 3.74 6.20 -2.39 -0.01 3.72 16 19 C -0.11 -3.69 6.30 31.67 0.20 -3.49 16 20 C -0.11 -2.64 6.91 31.89 0.22 -2.42 16 21 C -0.14 -4.03 6.56 31.67 0.21 -3.82 16 22 C 0.10 3.54 3.35 31.32 0.11 3.65 16 23 H 0.07 2.40 7.80 -2.39 -0.02 2.38 16 24 O -0.38 -17.16 7.96 -142.69 -1.14 -18.30 16 25 C 0.06 2.16 10.53 113.37 1.19 3.35 16 26 H 0.13 3.33 8.14 -2.38 -0.02 3.31 16 27 H 0.05 1.68 8.13 -2.39 -0.02 1.67 16 28 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 29 H 0.13 6.59 6.29 -2.39 -0.02 6.57 16 30 H 0.07 3.39 7.36 -2.39 -0.02 3.37 16 31 H 0.27 13.44 8.32 -92.71 -0.77 12.67 16 32 H 0.06 2.22 6.80 -2.39 -0.02 2.21 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 38 H 0.03 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -68.11 325.78 6.21 -61.90 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 1.04 Total: 26.85 kcal Atomic # 6 Polarization: 34.35 SS G_CDS: 5.67 Total: 40.01 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -1.17 Total: -70.77 kcal Atomic # 8 Polarization: -98.40 SS G_CDS: -1.35 Total: -99.75 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -68.11 6.21 -61.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337141956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.825 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds