Wall clock time and date at job start Tue Mar 31 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 119.99464 * 2 1 4 4 H 1.48498 * 109.47053 * 269.55851 * 3 2 1 5 5 H 1.48507 * 109.47194 * 29.56094 * 3 2 1 6 6 H 1.48499 * 109.47138 * 149.55785 * 3 2 1 7 7 C 1.38793 * 120.00691 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99782 * 338.43562 * 7 2 1 9 9 N 1.36926 * 120.00549 * 158.17027 * 7 2 1 10 10 C 1.38227 * 119.99544 * 329.75336 * 9 7 2 11 11 N 1.31568 * 126.45838 * 96.33282 * 10 9 7 12 12 N 1.28420 * 110.49845 * 179.85574 * 11 10 9 13 13 N 1.28910 * 110.35103 * 0.41742 * 12 11 10 14 14 N 1.35439 * 126.45816 * 276.64646 * 10 9 7 15 15 C 1.46504 * 127.38655 * 359.93915 * 14 10 9 16 16 C 1.50701 * 109.46753 * 93.45384 * 15 14 10 17 17 C 1.38237 * 119.99952 * 265.56348 * 16 15 14 18 18 C 1.38232 * 119.99876 * 179.76651 * 17 16 15 19 19 C 1.38236 * 120.00096 * 0.51263 * 18 17 16 20 20 C 1.38234 * 119.99793 * 359.74439 * 19 18 17 21 21 C 1.38231 * 120.00174 * 359.97438 * 20 19 18 22 22 C 1.46496 * 120.00506 * 149.75648 * 9 7 2 23 23 C 1.53000 * 117.49907 * 3.83987 * 22 9 7 24 24 C 1.52997 * 59.99997 * 252.51060 * 23 22 9 25 25 H 0.96996 * 120.00766 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47130 * 213.44826 * 15 14 10 27 27 H 1.08995 * 109.47315 * 333.45240 * 15 14 10 28 28 H 1.07997 * 120.00025 * 0.02562 * 17 16 15 29 29 H 1.08002 * 120.00390 * 180.23352 * 18 17 16 30 30 H 1.08003 * 120.00239 * 179.72855 * 19 18 17 31 31 H 1.08003 * 120.00252 * 179.97438 * 20 19 18 32 32 H 1.08007 * 120.00344 * 179.97438 * 21 20 19 33 33 H 1.09000 * 115.55305 * 149.54629 * 22 9 7 34 34 H 1.09008 * 117.49744 * 359.97438 * 23 22 9 35 35 H 1.08991 * 117.49908 * 145.02249 * 23 22 9 36 36 H 1.09002 * 117.50271 * 252.50865 * 24 23 22 37 37 H 1.09007 * 117.50340 * 107.48854 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.5063 2.0411 -1.4000 5 1 1.4422 2.6554 0.6908 6 1 3.5424 1.4431 0.7094 7 6 2.0098 -1.2019 -0.0005 8 1 1.5265 -2.1047 0.3429 9 7 3.3054 -1.2442 -0.4415 10 6 3.7330 -0.3617 -1.4157 11 7 4.3576 0.7791 -1.2175 12 7 4.6144 1.3518 -2.3378 13 7 4.1741 0.6386 -3.3172 14 7 3.5826 -0.5057 -2.7540 15 6 2.9418 -1.6162 -3.4628 16 6 1.4936 -1.2832 -3.7134 17 6 0.5229 -1.7087 -2.8258 18 6 -0.8049 -1.3991 -3.0532 19 6 -1.1634 -0.6731 -4.1736 20 6 -0.1933 -0.2522 -5.0639 21 6 1.1352 -0.5568 -4.8336 22 6 4.2384 -2.2247 0.1191 23 6 3.6829 -3.2320 1.1279 24 6 4.5915 -2.0961 1.6023 25 1 -0.4851 0.8399 -0.0004 26 1 3.4470 -1.7795 -4.4148 27 1 3.0073 -2.5200 -2.8570 28 1 0.8025 -2.2794 -1.9526 29 1 -1.5630 -1.7282 -2.3578 30 1 -2.2014 -0.4349 -4.3535 31 1 -0.4733 0.3147 -5.9395 32 1 1.8931 -0.2283 -5.5294 33 1 5.0215 -2.5684 -0.5567 34 1 2.6233 -3.1650 1.3747 35 1 4.1004 -4.2387 1.1157 36 1 5.6068 -2.3556 1.9023 37 1 4.1296 -1.2820 2.1609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340221899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:49 Heat of formation + Delta-G solvation = 199.233956 kcal Electronic energy + Delta-G solvation = -23319.502163 eV Core-core repulsion = 20101.505573 eV Total energy + Delta-G solvation = -3217.996590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.91227 -40.08491 -39.23133 -36.33840 -35.46276 -33.87151 -32.50417 -31.66370 -31.54895 -28.01251 -26.80480 -24.36029 -23.86884 -23.27770 -23.01307 -22.16836 -21.63716 -19.88385 -18.28543 -18.11613 -17.46337 -17.33761 -16.50322 -16.15563 -15.98730 -15.60418 -15.25785 -14.89811 -14.42719 -14.29867 -14.18551 -13.83893 -13.47948 -13.35791 -13.16744 -12.93837 -12.79983 -12.46656 -12.26823 -12.15363 -11.80466 -11.74228 -11.52674 -11.23610 -11.08836 -10.82910 -10.61241 -9.74306 -9.64508 -9.35213 -8.42920 -5.85541 0.01918 0.30604 0.64852 0.91987 1.16567 1.34718 1.45836 1.75213 2.27134 2.47419 2.93911 3.02276 3.20559 3.49935 3.73514 3.96792 4.11934 4.15433 4.18504 4.28724 4.32189 4.35212 4.40817 4.45731 4.58793 4.71424 4.81962 4.89194 4.97670 5.13054 5.20321 5.27427 5.38241 5.53089 5.59496 5.70076 5.72326 5.80016 5.95710 6.19563 6.64216 7.29795 7.49202 7.58126 8.65664 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.008677 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.643655 B = 3226.100156 C = 3455.071523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.039 3.961 3 Si 0.902 3.098 4 H -0.323 1.323 5 H -0.328 1.328 6 H -0.253 1.253 7 C -0.263 4.263 8 H 0.113 0.887 9 N -0.484 5.484 10 C 0.494 3.506 11 N -0.385 5.385 12 N -0.076 5.076 13 N -0.103 5.103 14 N -0.369 5.369 15 C 0.169 3.831 16 C -0.140 4.140 17 C -0.060 4.060 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.109 4.109 22 C 0.082 3.918 23 C -0.148 4.148 24 C -0.204 4.204 25 H 0.263 0.737 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -9.837 -6.737 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.165 4.165 3 Si 0.739 3.261 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.178 1.178 7 C -0.391 4.391 8 H 0.131 0.869 9 N -0.204 5.204 10 C 0.133 3.867 11 N -0.245 5.245 12 N -0.072 5.072 13 N -0.091 5.091 14 N -0.172 5.172 15 C 0.049 3.951 16 C -0.142 4.142 17 C -0.079 4.079 18 C -0.139 4.139 19 C -0.135 4.135 20 C -0.160 4.160 21 C -0.127 4.127 22 C -0.023 4.023 23 C -0.185 4.185 24 C -0.244 4.244 25 H 0.073 0.927 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.225 -8.642 -7.126 11.420 hybrid contribution -0.424 1.044 0.405 1.197 sum 1.801 -7.599 -6.721 10.303 Atomic orbital electron populations 1.69776 1.05588 1.26965 1.48784 1.25388 0.95345 0.97927 0.97836 0.86515 0.78879 0.83791 0.76879 1.25356 1.25898 1.17820 1.18679 0.84848 0.94872 1.40719 0.86935 1.40544 1.09656 1.35212 1.34977 1.21621 0.91332 0.90770 0.82953 1.74841 1.23759 1.07083 1.18849 1.77786 1.14408 1.21353 0.93625 1.82123 1.14013 0.94543 1.18379 1.52906 1.39972 1.17740 1.06544 1.21039 0.89294 0.85441 0.99353 1.19937 0.94319 1.02852 0.97060 1.21231 0.92843 0.97669 0.96172 1.21217 0.96554 0.99025 0.97074 1.21474 1.00464 0.97254 0.94318 1.21326 0.92687 1.01204 1.00756 1.21231 0.97167 0.97207 0.97140 1.21714 0.95423 0.94556 0.90566 1.23221 1.00172 0.94673 1.00478 1.23336 1.00893 1.01383 0.98794 0.92694 0.84952 0.85774 0.85846 0.86283 0.84320 0.83953 0.85167 0.85796 0.89026 0.85523 0.87006 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.53 13.96 21.64 0.30 -46.23 16 2 C 0.04 2.05 5.32 84.87 0.45 2.51 16 3 Si 0.90 49.76 23.74 68.60 1.63 51.39 16 4 H -0.32 -19.27 6.00 99.48 0.60 -18.67 16 5 H -0.33 -18.73 7.11 99.48 0.71 -18.02 16 6 H -0.25 -14.25 6.46 99.48 0.64 -13.61 16 7 C -0.26 -12.15 7.39 84.03 0.62 -11.53 16 8 H 0.11 5.22 6.46 -2.91 -0.02 5.20 16 9 N -0.48 -20.11 2.72 -500.33 -1.36 -21.47 16 10 C 0.49 22.11 5.32 260.62 1.39 23.49 16 11 N -0.39 -19.36 7.45 -58.66 -0.44 -19.80 16 12 N -0.08 -3.71 12.57 37.02 0.47 -3.24 16 13 N -0.10 -4.50 13.93 37.02 0.52 -3.98 16 14 N -0.37 -14.77 3.68 -353.31 -1.30 -16.07 16 15 C 0.17 5.16 6.64 85.63 0.57 5.73 16 16 C -0.14 -4.73 5.46 -19.86 -0.11 -4.84 16 17 C -0.06 -2.20 9.26 22.27 0.21 -2.00 16 18 C -0.12 -4.21 10.05 22.27 0.22 -3.98 16 19 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 20 C -0.14 -4.13 10.05 22.27 0.22 -3.90 16 21 C -0.11 -3.39 9.72 22.27 0.22 -3.18 16 22 C 0.08 2.69 6.52 44.99 0.29 2.98 16 23 C -0.15 -4.03 9.80 30.59 0.30 -3.73 16 24 C -0.20 -6.31 10.35 30.59 0.32 -5.99 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.13 3.11 8.11 -2.38 -0.02 3.09 16 27 H 0.12 3.40 8.05 -2.39 -0.02 3.38 16 28 H 0.12 4.83 6.57 -2.91 -0.02 4.81 16 29 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.09 2.89 6.27 -2.38 -0.01 2.87 16 35 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -64.79 312.12 5.65 -59.13 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.91 Total: 8.03 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.92 Total: -7.76 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -1.81 Total: -110.79 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.63 Total: 51.39 kcal Total: -64.79 5.65 -59.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340221899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.367 kcal (2) G-P(sol) polarization free energy of solvation -64.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds