Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48501 * 109.46733 * 274.98535 * 3 2 1 5 5 H 1.48494 * 109.47236 * 34.98196 * 3 2 1 6 6 H 1.48493 * 109.46910 * 154.98719 * 3 2 1 7 7 C 1.40023 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99719 * 186.28934 * 7 2 1 9 9 C 1.41317 * 120.00669 * 6.28587 * 7 2 1 10 10 C 1.40586 * 119.78706 * 173.66017 * 9 7 2 11 11 C 1.38344 * 119.14549 * 180.02562 * 10 9 7 12 12 C 1.38645 * 118.68334 * 359.74896 * 11 10 9 13 13 C 1.39757 * 119.48909 * 0.49600 * 12 11 10 14 14 N 1.38824 * 119.58623 * 179.76836 * 13 12 11 15 15 C 1.46499 * 119.99676 * 359.72934 * 14 13 12 16 16 C 1.53001 * 109.47217 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47553 * 179.97438 * 16 15 14 18 18 C 1.38994 * 120.00098 * 180.02562 * 17 16 15 19 19 C 1.39337 * 120.09696 * 359.97438 * 18 17 16 20 20 N 1.31918 * 119.89008 * 179.97438 * 19 18 17 21 21 C 1.32268 * 120.09109 * 359.97438 * 20 19 18 22 22 C 1.38167 * 120.18916 * 0.28286 * 21 20 19 23 23 N 1.32244 * 120.10592 * 359.43096 * 22 21 20 24 24 N 1.31987 * 120.83029 * 359.49502 * 13 12 11 25 25 H 0.96997 * 120.00383 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.42548 * 0.02562 * 10 9 7 27 27 H 1.08003 * 120.66165 * 180.02562 * 11 10 9 28 28 H 1.07997 * 120.25962 * 180.27319 * 12 11 10 29 29 H 0.96995 * 120.00475 * 179.73114 * 14 13 12 30 30 H 1.09002 * 109.47403 * 60.00185 * 15 14 13 31 31 H 1.08996 * 109.47417 * 299.99619 * 15 14 13 32 32 H 1.09004 * 109.47264 * 59.99914 * 16 15 14 33 33 H 1.08998 * 109.47141 * 300.00031 * 16 15 14 34 34 H 0.96995 * 119.99512 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.05115 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.91005 * 180.02562 * 21 20 19 37 37 H 1.07997 * 119.94136 * 179.70147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1072 -1.3948 5 1 1.4955 2.6200 0.8027 6 1 3.5876 1.4120 0.5920 7 6 2.0075 -1.2127 0.0005 8 1 3.0826 -1.2155 0.1030 9 6 1.3074 -2.4329 -0.1329 10 6 2.0212 -3.6368 -0.2661 11 6 1.3224 -4.8236 -0.3964 12 6 -0.0635 -4.7844 -0.3857 13 6 -0.7160 -3.5555 -0.2552 14 7 -2.1036 -3.5134 -0.2491 15 6 -2.8745 -4.7518 -0.3850 16 6 -4.3695 -4.4286 -0.3471 17 7 -5.1405 -5.6669 -0.4836 18 6 -6.5298 -5.6248 -0.4777 19 6 -7.1913 -4.4061 -0.3414 20 7 -8.5100 -4.3708 -0.3368 21 6 -9.2038 -5.4900 -0.4617 22 6 -8.5514 -6.7010 -0.5917 23 7 -7.2298 -6.7446 -0.6030 24 7 -0.0296 -2.4349 -0.1322 25 1 -0.4850 0.8400 0.0004 26 1 3.1011 -3.6350 -0.2667 27 1 1.8460 -5.7625 -0.4999 28 1 -0.6344 -5.6962 -0.4812 29 1 -2.5627 -2.6642 -0.1549 30 1 -2.6279 -5.4253 0.4358 31 1 -2.6298 -5.2299 -1.3334 32 1 -4.6166 -3.7549 -1.1677 33 1 -4.6140 -3.9507 0.6015 34 1 -4.6814 -6.5160 -0.5782 35 1 -6.6254 -3.4918 -0.2406 36 1 -10.2833 -5.4577 -0.4580 37 1 -9.1219 -7.6129 -0.6886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342841048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = 96.017045 kcal Electronic energy + Delta-G solvation = -20517.124526 eV Core-core repulsion = 17294.652114 eV Total energy + Delta-G solvation = -3222.472411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11946 -38.42341 -37.08133 -35.01293 -34.07426 -33.27137 -31.05309 -30.33266 -29.22902 -27.20394 -25.39881 -24.99339 -23.54851 -22.48348 -21.37687 -20.44445 -18.13109 -17.66827 -17.29535 -16.73483 -16.33364 -15.75837 -15.06750 -14.96759 -14.73889 -14.60676 -14.52623 -14.04612 -13.25295 -13.01087 -12.96664 -12.79853 -12.08920 -12.00473 -11.67100 -11.55710 -11.48664 -11.21273 -11.02064 -10.66036 -10.48747 -10.38412 -9.96965 -9.53432 -9.25879 -8.97203 -8.11390 -7.96840 -7.57200 -6.62678 -6.38603 -4.51487 0.79291 1.12623 2.63740 2.83437 3.09591 3.12976 3.17680 3.25831 3.64927 3.95815 4.11834 4.24163 4.25479 4.42264 4.70406 4.78681 4.98204 5.03831 5.05439 5.27158 5.33777 5.79340 5.83649 6.03597 6.07818 6.10226 6.46023 6.51197 6.78470 6.82935 6.87032 7.15076 7.20308 7.33704 7.52594 7.73726 7.77742 7.85008 8.10930 8.28033 8.57685 8.75068 9.05005 10.18301 10.34997 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.002909 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.796370 B = 9621.725262 C =10729.400575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.313 4.313 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.411 3.589 14 N -0.737 5.737 15 C 0.135 3.865 16 C 0.113 3.887 17 N -0.708 5.708 18 C 0.361 3.639 19 C -0.009 4.009 20 N -0.403 5.403 21 C -0.031 4.031 22 C 0.105 3.895 23 N -0.508 5.508 24 N -0.531 5.531 25 H 0.270 0.730 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.409 0.591 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.678 -7.947 -0.873 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.336 4.336 11 C -0.057 4.057 12 C -0.393 4.393 13 C 0.172 3.828 14 N -0.375 5.375 15 C 0.008 3.992 16 C -0.012 4.012 17 N -0.340 5.340 18 C 0.121 3.879 19 C -0.178 4.178 20 N -0.116 5.116 21 C -0.191 4.191 22 C -0.056 4.056 23 N -0.231 5.231 24 N -0.252 5.252 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.182 0.818 36 H 0.181 0.819 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.201 -7.023 -0.781 15.862 hybrid contribution 0.803 -0.255 -0.141 0.854 sum -13.398 -7.278 -0.921 15.275 Atomic orbital electron populations 1.70139 1.07181 1.27432 1.28989 1.26051 0.94870 1.00973 0.93504 0.86346 0.80599 0.81046 0.78997 1.19553 1.20206 1.18548 1.19599 0.94619 0.89503 1.42821 0.89798 1.18202 0.86771 0.91841 0.86705 1.21556 0.98521 0.93802 1.19769 1.20606 0.93450 0.96396 0.95199 1.20588 0.94641 0.95749 1.28356 1.18419 0.83813 0.90403 0.90176 1.43816 1.02969 1.07074 1.83659 1.21009 0.87846 0.88854 1.01445 1.21622 0.91241 0.85891 1.02467 1.44304 1.01076 1.10468 1.78172 1.19358 0.86349 0.90921 0.91253 1.23158 0.91202 0.97432 1.06022 1.68215 1.06909 1.30651 1.05860 1.23315 1.01499 0.89091 1.05162 1.23439 0.89559 0.99387 0.93233 1.67948 1.08313 1.28791 1.18058 1.68184 1.07958 1.24125 1.24931 0.91889 0.88607 0.88866 0.89246 0.76752 0.92249 0.92254 0.90732 0.90715 0.75471 0.81756 0.81904 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.63 11.49 55.55 0.64 -17.99 16 2 C 0.07 1.80 5.49 -17.35 -0.10 1.70 16 3 Si 0.91 18.47 29.56 -169.99 -5.03 13.44 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 7 C -0.43 -11.58 9.13 -37.74 -0.34 -11.92 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.69 16 9 C 0.29 8.00 6.54 -85.00 -0.56 7.44 16 10 C -0.31 -7.81 9.83 -38.66 -0.38 -8.19 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.37 -8.19 9.34 -38.86 -0.36 -8.55 16 13 C 0.41 9.66 7.65 -155.31 -1.19 8.47 16 14 N -0.74 -13.54 5.72 -60.40 -0.35 -13.88 16 15 C 0.14 1.82 5.00 -4.04 -0.02 1.80 16 16 C 0.11 1.19 5.02 -4.04 -0.02 1.17 16 17 N -0.71 -7.35 5.73 -60.30 -0.35 -7.69 16 18 C 0.36 4.17 7.67 -154.74 -1.19 2.98 16 19 C -0.01 -0.10 10.49 -17.11 -0.18 -0.28 16 20 N -0.40 -4.76 10.49 -12.88 -0.14 -4.89 16 21 C -0.03 -0.28 11.21 -17.39 -0.19 -0.48 16 22 C 0.10 0.94 11.21 -17.40 -0.20 0.75 16 23 N -0.51 -5.85 10.53 -12.24 -0.13 -5.98 16 24 N -0.53 -14.31 7.92 -10.33 -0.08 -14.39 16 25 H 0.27 6.37 8.29 -40.82 -0.34 6.03 16 26 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 27 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 28 H 0.09 1.75 6.68 -52.49 -0.35 1.39 16 29 H 0.40 7.16 8.59 -40.82 -0.35 6.81 16 30 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 31 H 0.06 0.81 7.93 -51.93 -0.41 0.40 16 32 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 33 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.41 3.97 8.60 -40.82 -0.35 3.62 16 35 H 0.17 1.64 6.73 -52.49 -0.35 1.28 16 36 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -31.29 322.18 -9.98 -41.27 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.29 Total: 11.50 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -5.12 Total: -6.24 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.40 Total: -64.83 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.29 -9.98 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342841048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.291 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds