Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48501 * 109.46733 * 274.98535 * 3 2 1 5 5 H 1.48494 * 109.47236 * 34.98196 * 3 2 1 6 6 H 1.48493 * 109.46910 * 154.98719 * 3 2 1 7 7 C 1.40023 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99719 * 186.28934 * 7 2 1 9 9 C 1.41317 * 120.00669 * 6.28587 * 7 2 1 10 10 C 1.40586 * 119.78706 * 173.66017 * 9 7 2 11 11 C 1.38344 * 119.14549 * 180.02562 * 10 9 7 12 12 C 1.38645 * 118.68334 * 359.74896 * 11 10 9 13 13 C 1.39757 * 119.48909 * 0.49600 * 12 11 10 14 14 N 1.38824 * 119.58623 * 179.76836 * 13 12 11 15 15 C 1.46499 * 119.99676 * 359.72934 * 14 13 12 16 16 C 1.53001 * 109.47217 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47553 * 179.97438 * 16 15 14 18 18 C 1.38994 * 120.00098 * 180.02562 * 17 16 15 19 19 C 1.39337 * 120.09696 * 359.97438 * 18 17 16 20 20 N 1.31918 * 119.89008 * 179.97438 * 19 18 17 21 21 C 1.32268 * 120.09109 * 359.97438 * 20 19 18 22 22 C 1.38167 * 120.18916 * 0.28286 * 21 20 19 23 23 N 1.32244 * 120.10592 * 359.43096 * 22 21 20 24 24 N 1.31987 * 120.83029 * 359.49502 * 13 12 11 25 25 H 0.96997 * 120.00383 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.42548 * 0.02562 * 10 9 7 27 27 H 1.08003 * 120.66165 * 180.02562 * 11 10 9 28 28 H 1.07997 * 120.25962 * 180.27319 * 12 11 10 29 29 H 0.96995 * 120.00475 * 179.73114 * 14 13 12 30 30 H 1.09002 * 109.47403 * 60.00185 * 15 14 13 31 31 H 1.08996 * 109.47417 * 299.99619 * 15 14 13 32 32 H 1.09004 * 109.47264 * 59.99914 * 16 15 14 33 33 H 1.08998 * 109.47141 * 300.00031 * 16 15 14 34 34 H 0.96995 * 119.99512 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.05115 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.91005 * 180.02562 * 21 20 19 37 37 H 1.07997 * 119.94136 * 179.70147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1072 -1.3948 5 1 1.4955 2.6200 0.8027 6 1 3.5876 1.4120 0.5920 7 6 2.0075 -1.2127 0.0005 8 1 3.0826 -1.2155 0.1030 9 6 1.3074 -2.4329 -0.1329 10 6 2.0212 -3.6368 -0.2661 11 6 1.3224 -4.8236 -0.3964 12 6 -0.0635 -4.7844 -0.3857 13 6 -0.7160 -3.5555 -0.2552 14 7 -2.1036 -3.5134 -0.2491 15 6 -2.8745 -4.7518 -0.3850 16 6 -4.3695 -4.4286 -0.3471 17 7 -5.1405 -5.6669 -0.4836 18 6 -6.5298 -5.6248 -0.4777 19 6 -7.1913 -4.4061 -0.3414 20 7 -8.5100 -4.3708 -0.3368 21 6 -9.2038 -5.4900 -0.4617 22 6 -8.5514 -6.7010 -0.5917 23 7 -7.2298 -6.7446 -0.6030 24 7 -0.0296 -2.4349 -0.1322 25 1 -0.4850 0.8400 0.0004 26 1 3.1011 -3.6350 -0.2667 27 1 1.8460 -5.7625 -0.4999 28 1 -0.6344 -5.6962 -0.4812 29 1 -2.5627 -2.6642 -0.1549 30 1 -2.6279 -5.4253 0.4358 31 1 -2.6298 -5.2299 -1.3334 32 1 -4.6166 -3.7549 -1.1677 33 1 -4.6140 -3.9507 0.6015 34 1 -4.6814 -6.5160 -0.5782 35 1 -6.6254 -3.4918 -0.2406 36 1 -10.2833 -5.4577 -0.4580 37 1 -9.1219 -7.6129 -0.6886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342841048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = 74.913368 kcal Electronic energy + Delta-G solvation = -20518.039650 eV Core-core repulsion = 17294.652114 eV Total energy + Delta-G solvation = -3223.387535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89575 -40.15819 -38.14360 -36.35725 -35.20174 -34.78082 -32.46327 -31.88275 -30.60284 -28.45846 -27.23032 -25.82386 -24.51195 -23.67402 -22.97111 -22.13642 -19.34996 -18.90717 -18.42490 -17.94611 -17.41231 -16.69462 -16.61727 -16.48289 -16.00664 -15.67077 -15.56657 -15.37224 -14.75727 -14.60926 -14.41902 -13.76881 -13.60645 -13.37960 -12.86606 -12.79186 -12.69839 -12.50615 -12.48332 -12.34225 -12.19172 -11.73541 -11.33214 -11.14208 -10.67399 -10.03614 -9.83495 -9.45414 -8.90019 -8.33498 -8.24155 -6.47139 0.04176 0.33163 1.05620 1.33966 1.42729 1.56192 1.58438 1.73463 2.25779 2.82199 2.88103 2.92235 3.47779 3.56183 3.60438 3.73095 3.98100 4.10684 4.29966 4.33907 4.40058 4.42387 4.62785 4.69263 4.82332 4.86295 4.98817 5.01002 5.10951 5.35010 5.37945 5.67393 5.71307 5.96294 6.04988 6.23118 6.36637 6.52978 6.56969 6.82779 6.92872 7.00531 7.19884 8.33189 8.50848 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.002909 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.796370 B = 9621.725262 C =10729.400575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.258 3.742 10 C -0.343 4.343 11 C -0.031 4.031 12 C -0.366 4.366 13 C 0.396 3.604 14 N -0.731 5.731 15 C 0.137 3.863 16 C 0.128 3.872 17 N -0.705 5.705 18 C 0.349 3.651 19 C -0.027 4.027 20 N -0.429 5.429 21 C -0.030 4.030 22 C 0.107 3.893 23 N -0.527 5.527 24 N -0.565 5.565 25 H 0.277 0.723 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.397 0.603 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.170 0.830 36 H 0.195 0.805 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 -8.860 -1.057 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.104 0.896 9 C 0.131 3.869 10 C -0.366 4.366 11 C -0.055 4.055 12 C -0.392 4.392 13 C 0.155 3.845 14 N -0.368 5.368 15 C 0.012 3.988 16 C 0.003 3.997 17 N -0.338 5.338 18 C 0.109 3.891 19 C -0.194 4.194 20 N -0.143 5.143 21 C -0.191 4.191 22 C -0.054 4.054 23 N -0.251 5.251 24 N -0.287 5.287 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.232 0.768 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.249 0.751 35 H 0.187 0.813 36 H 0.212 0.788 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.513 -7.970 -0.965 17.467 hybrid contribution 1.018 -0.164 -0.097 1.036 sum -14.494 -8.134 -1.062 16.655 Atomic orbital electron populations 1.70222 1.08675 1.28739 1.29568 1.26925 0.95761 1.04250 0.92568 0.85164 0.79141 0.76057 0.79116 1.19061 1.19250 1.18063 1.19930 0.95008 0.90662 1.44729 0.89642 1.18667 0.87633 0.93113 0.87460 1.21705 0.99036 0.94202 1.21627 1.21028 0.93886 0.97081 0.93536 1.20968 0.94922 0.96498 1.26788 1.18872 0.85683 0.90301 0.89651 1.43939 1.01513 1.08850 1.82455 1.21137 0.89027 0.86893 1.01736 1.21391 0.89251 0.86121 1.02974 1.44160 1.00855 1.10336 1.78440 1.19427 0.86573 0.91150 0.91901 1.23260 0.91470 0.97758 1.06956 1.68219 1.07212 1.32112 1.06713 1.23903 1.02961 0.88568 1.03632 1.24084 0.88917 1.00831 0.91551 1.67991 1.09588 1.28906 1.18586 1.68157 1.08188 1.26013 1.26364 0.91269 0.88022 0.85315 0.86137 0.76791 0.91757 0.91793 0.90309 0.90266 0.75096 0.81284 0.78805 0.77901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.99 11.49 21.84 0.25 -39.74 16 2 C 0.03 1.38 5.49 85.29 0.47 1.85 16 3 Si 0.98 38.38 29.56 68.60 2.03 40.41 16 4 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.47 -26.02 9.13 23.46 0.21 -25.81 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.26 14.61 6.54 40.19 0.26 14.87 16 10 C -0.34 -17.35 9.83 22.87 0.22 -17.12 16 11 C -0.03 -1.38 10.15 22.39 0.23 -1.15 16 12 C -0.37 -15.85 9.34 22.73 0.21 -15.64 16 13 C 0.40 18.59 7.65 133.40 1.02 19.61 16 14 N -0.73 -26.54 5.72 -345.00 -1.97 -28.52 16 15 C 0.14 3.50 5.00 86.38 0.43 3.94 16 16 C 0.13 2.54 5.02 86.38 0.43 2.97 16 17 N -0.70 -13.74 5.73 -344.70 -1.97 -15.72 16 18 C 0.35 7.65 7.67 133.04 1.02 8.67 16 19 C -0.03 -0.59 10.49 84.94 0.89 0.30 16 20 N -0.43 -9.61 10.49 -194.67 -2.04 -11.65 16 21 C -0.03 -0.49 11.21 84.61 0.95 0.46 16 22 C 0.11 1.65 11.21 84.61 0.95 2.60 16 23 N -0.53 -11.23 10.53 -192.65 -2.03 -13.26 16 24 N -0.56 -31.20 7.92 -186.59 -1.48 -32.68 16 25 H 0.28 13.29 8.29 -92.71 -0.77 12.52 16 26 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.12 4.37 6.68 -2.91 -0.02 4.35 16 29 H 0.40 14.39 8.59 -92.71 -0.80 13.59 16 30 H 0.06 1.62 7.91 -2.39 -0.02 1.60 16 31 H 0.06 1.61 7.93 -2.39 -0.02 1.60 16 32 H 0.08 1.53 7.94 -2.38 -0.02 1.51 16 33 H 0.08 1.53 7.94 -2.39 -0.02 1.52 16 34 H 0.41 7.39 8.60 -92.71 -0.80 6.60 16 35 H 0.17 3.33 6.73 -2.91 -0.02 3.31 16 36 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.21 322.18 -0.39 -69.60 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -0.47 Total: 36.00 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 7.30 Total: -4.45 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -9.24 Total: -141.56 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -69.21 -0.39 -69.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342841048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.512 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds