Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00093 * 2 1 4 4 C 1.52995 * 109.47550 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46910 * 64.99752 * 4 3 2 6 6 C 1.37102 * 120.00018 * 270.00120 * 5 4 3 7 7 H 1.08008 * 119.99574 * 140.47744 * 6 5 4 8 8 C 1.38950 * 120.00343 * 320.47855 * 6 5 4 9 9 N 1.31414 * 120.00045 * 162.02142 * 8 6 5 10 10 Si 1.86800 * 119.99791 * 342.02043 * 8 6 5 11 11 H 1.48497 * 109.47119 * 95.35205 * 10 8 6 12 12 H 1.48499 * 109.46892 * 215.35218 * 10 8 6 13 13 H 1.48497 * 109.47001 * 335.35171 * 10 8 6 14 14 C 1.34777 * 119.99857 * 90.00627 * 5 4 3 15 15 O 1.21291 * 120.00047 * 4.51871 * 14 5 4 16 16 C 1.50704 * 119.99814 * 184.25038 * 14 5 4 17 17 H 1.09004 * 112.85087 * 40.12726 * 16 14 5 18 18 C 1.53776 * 113.61380 * 171.32508 * 16 14 5 19 19 C 1.53783 * 87.08167 * 139.97712 * 18 16 14 20 20 H 1.09004 * 113.60922 * 89.11842 * 19 18 16 21 21 C 1.50702 * 113.61948 * 220.01752 * 19 18 16 22 22 O 1.20828 * 119.99856 * 0.02562 * 21 19 18 23 23 O 1.34225 * 120.00051 * 179.97438 * 21 19 18 24 24 C 1.45200 * 116.99799 * 179.97438 * 23 21 19 25 25 C 1.53778 * 113.61249 * 268.82334 * 16 14 5 26 26 H 1.09006 * 109.46676 * 300.00159 * 1 2 3 27 27 H 1.09001 * 109.46702 * 59.99579 * 1 2 3 28 28 H 1.08990 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47145 * 59.99871 * 3 2 1 30 30 H 1.09004 * 109.47281 * 300.00167 * 3 2 1 31 31 H 1.09010 * 109.46960 * 305.00305 * 4 3 2 32 32 H 1.09001 * 109.47765 * 185.00048 * 4 3 2 33 33 H 0.96994 * 119.99665 * 179.97438 * 9 8 6 34 34 H 1.08995 * 113.61737 * 254.52705 * 18 16 14 35 35 H 1.09002 * 113.61326 * 25.35187 * 18 16 14 36 36 H 1.09001 * 109.46703 * 60.00682 * 24 23 21 37 37 H 1.09001 * 109.46998 * 179.97438 * 24 23 21 38 38 H 1.08998 * 109.47493 * 300.00338 * 24 23 21 39 39 H 1.08997 * 113.61664 * 334.56932 * 25 16 14 40 40 H 1.08997 * 113.61500 * 105.47154 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0969 -0.7986 -1.3370 7 1 3.7920 -1.3133 -2.2362 8 6 4.6120 -1.5179 -0.2655 9 7 4.4106 -2.8141 -0.1867 10 14 5.5909 -0.6423 1.0629 11 1 4.6924 -0.2975 2.1938 12 1 6.6760 -1.5332 1.5465 13 1 6.1824 0.6000 0.5042 14 6 4.2615 1.3338 -2.3218 15 8 4.2338 2.5424 -2.2240 16 6 4.6215 0.6923 -3.6371 17 1 4.0156 -0.1862 -3.8595 18 6 4.7126 1.6894 -4.8043 19 6 5.9424 0.8985 -5.2807 20 1 5.6988 0.0758 -5.9531 21 6 7.0567 1.7701 -5.8001 22 8 6.9286 2.9716 -5.8117 23 8 8.1919 1.2119 -6.2488 24 6 9.2220 2.1125 -6.7349 25 6 6.1314 0.4634 -3.8179 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8410 32 1 3.9786 2.1765 0.0889 33 1 4.7705 -3.3162 0.5611 34 1 3.8672 1.6370 -5.4902 35 1 4.9414 2.7081 -4.4914 36 1 9.5239 2.7858 -5.9326 37 1 10.0839 1.5334 -7.0664 38 1 8.8317 2.6942 -7.5699 39 1 6.7494 1.1466 -3.2355 40 1 6.4313 -0.5787 -3.7077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353713005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -128.097370 kcal Electronic energy + Delta-G solvation = -23538.430993 eV Core-core repulsion = 19934.345829 eV Total energy + Delta-G solvation = -3604.085164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67541 -39.30777 -37.63637 -36.73305 -35.99183 -34.72710 -31.91862 -29.76931 -28.46512 -26.54565 -25.75427 -25.31253 -24.63350 -22.94786 -21.40647 -19.47387 -18.75852 -17.82155 -16.97041 -16.59774 -16.26027 -15.94648 -15.73229 -15.44857 -14.94422 -14.55583 -14.46755 -13.99360 -13.73674 -13.19892 -13.11101 -12.64193 -12.47609 -12.18899 -12.11143 -11.84321 -11.74703 -11.55322 -11.22519 -10.99102 -10.87631 -10.81364 -10.75796 -10.57481 -10.15346 -10.05194 -9.92864 -9.85836 -9.12762 -9.06692 -8.51511 -7.75654 -6.35953 -3.97374 2.33804 2.82782 3.09730 3.24925 3.31086 3.63989 4.19111 4.30113 4.47074 4.68561 4.82466 4.99284 5.07109 5.12319 5.14082 5.28252 5.33631 5.48633 5.59956 5.67886 5.78751 5.84489 5.95400 5.95617 6.03485 6.05160 6.12437 6.23948 6.31909 6.36411 6.37145 6.46776 6.50060 6.84291 7.40745 7.80783 7.89397 8.15155 8.29822 9.03020 9.40145 9.70471 10.75156 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.005083 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.398134 B = 5506.726247 C = 6178.562313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.099 3.901 5 N -0.454 5.454 6 C -0.326 4.326 7 H 0.103 0.897 8 C 0.074 3.926 9 N -0.862 5.862 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.264 1.264 14 C 0.489 3.511 15 O -0.599 6.599 16 C -0.106 4.106 17 H 0.115 0.885 18 C -0.101 4.101 19 C -0.115 4.115 20 H 0.125 0.875 21 C 0.472 3.528 22 O -0.506 6.506 23 O -0.359 6.359 24 C 0.034 3.966 25 C -0.091 4.091 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.272 0.728 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 4.212 -6.834 8.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.024 4.024 5 N -0.174 5.174 6 C -0.453 4.453 7 H 0.121 0.879 8 C -0.133 4.133 9 N -0.498 5.498 10 Si 0.701 3.299 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.279 3.721 15 O -0.484 6.484 16 C -0.127 4.127 17 H 0.133 0.867 18 C -0.139 4.139 19 C -0.134 4.134 20 H 0.143 0.857 21 C 0.315 3.685 22 O -0.393 6.393 23 O -0.276 6.276 24 C -0.060 4.060 25 C -0.129 4.129 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.890 4.809 -6.673 8.440 hybrid contribution 0.325 0.514 0.829 1.028 sum 2.215 5.323 -5.844 8.210 Atomic orbital electron populations 1.22659 0.83078 1.02093 0.98696 1.88232 1.17624 1.26510 1.94992 1.22867 0.94939 0.85255 0.99181 1.21726 0.92186 0.99010 0.89481 1.43660 1.57411 1.07185 1.09133 1.18907 1.42593 0.78893 1.04906 0.87912 1.25203 0.95786 0.95032 0.97271 1.69721 1.41832 1.07040 1.31190 0.87015 0.80309 0.80294 0.82304 1.20277 1.21680 1.18809 1.20157 0.79311 0.86354 0.86301 1.90538 1.57806 1.14618 1.85437 1.22303 0.97594 0.99581 0.93235 0.86737 1.22919 0.94625 1.00290 0.96078 1.22661 0.92614 0.99273 0.98830 0.85705 1.23851 0.82633 0.88386 0.73636 1.90649 1.80653 1.16464 1.51554 1.86549 1.26037 1.41471 1.73540 1.23220 0.89207 0.94151 0.99418 1.22644 0.96217 1.03136 0.90950 0.95250 0.94916 0.90067 0.93973 0.93440 0.91001 0.89730 0.91772 0.90801 0.87479 0.92041 0.88349 0.92149 0.89809 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.56 10.18 -35.23 -0.36 -7.92 16 3 C 0.06 1.10 6.28 37.16 0.23 1.33 16 4 C 0.10 2.21 4.63 -4.04 -0.02 2.19 16 5 N -0.45 -10.75 2.14 -114.80 -0.25 -11.00 16 6 C -0.33 -8.23 8.62 -14.93 -0.13 -8.36 16 7 H 0.10 2.70 6.85 -52.48 -0.36 2.34 16 8 C 0.07 1.93 5.36 -17.47 -0.09 1.84 16 9 N -0.86 -23.65 13.96 55.50 0.77 -22.87 16 10 Si 0.87 20.59 24.83 -169.99 -4.22 16.37 16 11 H -0.28 -6.36 6.74 56.52 0.38 -5.98 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.26 -6.27 7.10 56.52 0.40 -5.87 16 14 C 0.49 11.10 7.14 -10.98 -0.08 11.02 16 15 O -0.60 -14.72 15.44 5.55 0.09 -14.63 16 16 C -0.11 -1.97 3.18 -90.96 -0.29 -2.26 16 17 H 0.11 2.05 6.96 -51.93 -0.36 1.69 16 18 C -0.10 -1.68 6.78 -25.92 -0.18 -1.86 16 19 C -0.11 -1.68 4.26 -90.96 -0.39 -2.07 16 20 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 21 C 0.47 7.37 7.48 36.01 0.27 7.64 16 22 O -0.51 -9.23 15.65 -18.75 -0.29 -9.53 16 23 O -0.36 -4.94 10.57 -39.24 -0.41 -5.35 16 24 C 0.03 0.35 10.56 101.05 1.07 1.42 16 25 C -0.09 -1.54 7.18 -25.92 -0.19 -1.73 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.67 3.20 -51.92 -0.17 1.50 16 32 H 0.08 1.81 7.36 -51.93 -0.38 1.43 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 2.07 6.65 -51.93 -0.35 1.73 16 36 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -31.66 333.11 -4.17 -35.83 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.84 Total: 3.31 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 1.32 Total: 10.78 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.53 Total: -33.87 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.98 Total: -37.44 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.22 Total: 16.37 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.66 -4.17 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353713005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.269 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds