Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00093 * 2 1 4 4 C 1.52995 * 109.47550 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46910 * 64.99752 * 4 3 2 6 6 C 1.37102 * 120.00018 * 270.00120 * 5 4 3 7 7 H 1.08008 * 119.99574 * 140.47744 * 6 5 4 8 8 C 1.38950 * 120.00343 * 320.47855 * 6 5 4 9 9 N 1.31414 * 120.00045 * 162.02142 * 8 6 5 10 10 Si 1.86800 * 119.99791 * 342.02043 * 8 6 5 11 11 H 1.48497 * 109.47119 * 95.35205 * 10 8 6 12 12 H 1.48499 * 109.46892 * 215.35218 * 10 8 6 13 13 H 1.48497 * 109.47001 * 335.35171 * 10 8 6 14 14 C 1.34777 * 119.99857 * 90.00627 * 5 4 3 15 15 O 1.21291 * 120.00047 * 4.51871 * 14 5 4 16 16 C 1.50704 * 119.99814 * 184.25038 * 14 5 4 17 17 H 1.09004 * 112.85087 * 40.12726 * 16 14 5 18 18 C 1.53776 * 113.61380 * 171.32508 * 16 14 5 19 19 C 1.53783 * 87.08167 * 139.97712 * 18 16 14 20 20 H 1.09004 * 113.60922 * 89.11842 * 19 18 16 21 21 C 1.50702 * 113.61948 * 220.01752 * 19 18 16 22 22 O 1.20828 * 119.99856 * 0.02562 * 21 19 18 23 23 O 1.34225 * 120.00051 * 179.97438 * 21 19 18 24 24 C 1.45200 * 116.99799 * 179.97438 * 23 21 19 25 25 C 1.53778 * 113.61249 * 268.82334 * 16 14 5 26 26 H 1.09006 * 109.46676 * 300.00159 * 1 2 3 27 27 H 1.09001 * 109.46702 * 59.99579 * 1 2 3 28 28 H 1.08990 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47145 * 59.99871 * 3 2 1 30 30 H 1.09004 * 109.47281 * 300.00167 * 3 2 1 31 31 H 1.09010 * 109.46960 * 305.00305 * 4 3 2 32 32 H 1.09001 * 109.47765 * 185.00048 * 4 3 2 33 33 H 0.96994 * 119.99665 * 179.97438 * 9 8 6 34 34 H 1.08995 * 113.61737 * 254.52705 * 18 16 14 35 35 H 1.09002 * 113.61326 * 25.35187 * 18 16 14 36 36 H 1.09001 * 109.46703 * 60.00682 * 24 23 21 37 37 H 1.09001 * 109.46998 * 179.97438 * 24 23 21 38 38 H 1.08998 * 109.47493 * 300.00338 * 24 23 21 39 39 H 1.08997 * 113.61664 * 334.56932 * 25 16 14 40 40 H 1.08997 * 113.61500 * 105.47154 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0969 -0.7986 -1.3370 7 1 3.7920 -1.3133 -2.2362 8 6 4.6120 -1.5179 -0.2655 9 7 4.4106 -2.8141 -0.1867 10 14 5.5909 -0.6423 1.0629 11 1 4.6924 -0.2975 2.1938 12 1 6.6760 -1.5332 1.5465 13 1 6.1824 0.6000 0.5042 14 6 4.2615 1.3338 -2.3218 15 8 4.2338 2.5424 -2.2240 16 6 4.6215 0.6923 -3.6371 17 1 4.0156 -0.1862 -3.8595 18 6 4.7126 1.6894 -4.8043 19 6 5.9424 0.8985 -5.2807 20 1 5.6988 0.0758 -5.9531 21 6 7.0567 1.7701 -5.8001 22 8 6.9286 2.9716 -5.8117 23 8 8.1919 1.2119 -6.2488 24 6 9.2220 2.1125 -6.7349 25 6 6.1314 0.4634 -3.8179 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8410 32 1 3.9786 2.1765 0.0889 33 1 4.7705 -3.3162 0.5611 34 1 3.8672 1.6370 -5.4902 35 1 4.9414 2.7081 -4.4914 36 1 9.5239 2.7858 -5.9326 37 1 10.0839 1.5334 -7.0664 38 1 8.8317 2.6942 -7.5699 39 1 6.7494 1.1466 -3.2355 40 1 6.4313 -0.5787 -3.7077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353713005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -148.778755 kcal Electronic energy + Delta-G solvation = -23539.327805 eV Core-core repulsion = 19934.345829 eV Total energy + Delta-G solvation = -3604.981976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -41.97427 -40.88355 -39.08893 -38.20789 -37.27504 -36.58549 -33.88132 -31.39460 -29.59485 -27.78186 -27.19739 -26.67059 -26.42850 -24.46985 -22.83775 -20.96009 -20.35738 -19.27517 -18.37440 -18.25183 -17.58939 -17.37358 -17.25079 -16.96752 -16.43542 -16.09002 -16.03500 -15.57334 -15.25663 -14.63950 -14.49417 -14.19668 -14.09585 -13.59612 -13.50926 -13.38305 -13.10274 -13.06714 -12.69736 -12.61934 -12.48842 -12.21558 -12.09177 -11.87095 -11.79489 -11.67595 -11.40859 -11.29872 -11.01924 -10.56644 -10.31992 -9.66779 -8.36912 -5.98381 1.11229 1.21384 1.33261 1.41746 1.75489 1.86535 2.25490 2.61429 2.93348 3.16279 3.42011 3.50422 3.82656 3.88907 4.06782 4.12546 4.15726 4.31682 4.32855 4.37944 4.39320 4.55684 4.57041 4.64608 4.66780 4.70670 4.72372 4.76601 4.84930 4.86534 5.01799 5.04634 5.34964 5.41763 5.55173 6.17797 6.31613 6.40562 6.72135 7.07798 7.49270 7.82734 8.77195 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.005083 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.398134 B = 5506.726247 C = 6178.562313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.062 3.938 4 C 0.089 3.911 5 N -0.465 5.465 6 C -0.311 4.311 7 H 0.089 0.911 8 C 0.039 3.961 9 N -0.897 5.897 10 Si 0.915 3.085 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.271 1.271 14 C 0.483 3.517 15 O -0.621 6.621 16 C -0.112 4.112 17 H 0.124 0.876 18 C -0.097 4.097 19 C -0.095 4.095 20 H 0.164 0.836 21 C 0.474 3.526 22 O -0.538 6.538 23 O -0.360 6.360 24 C 0.026 3.974 25 C -0.091 4.091 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.274 0.726 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.134 0.866 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 4.195 -7.593 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.034 4.034 5 N -0.185 5.185 6 C -0.438 4.438 7 H 0.107 0.893 8 C -0.165 4.165 9 N -0.535 5.535 10 Si 0.743 3.257 11 H -0.194 1.194 12 H -0.214 1.214 13 H -0.196 1.196 14 C 0.274 3.726 15 O -0.507 6.507 16 C -0.133 4.133 17 H 0.142 0.858 18 C -0.135 4.135 19 C -0.114 4.114 20 H 0.181 0.819 21 C 0.318 3.682 22 O -0.428 6.428 23 O -0.276 6.276 24 C -0.067 4.067 25 C -0.129 4.129 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.942 4.789 -7.432 9.052 hybrid contribution 0.304 0.581 1.017 1.210 sum 2.246 5.370 -6.415 8.662 Atomic orbital electron populations 1.22864 0.80511 1.03171 1.00386 1.88157 1.20563 1.27312 1.95328 1.22781 0.93117 0.85204 1.00507 1.21847 0.94311 0.98666 0.88580 1.43791 1.58007 1.06726 1.09979 1.18768 1.41422 0.79485 1.04174 0.89329 1.25618 0.96584 0.95374 0.98901 1.69780 1.43437 1.08051 1.32252 0.86322 0.79385 0.79060 0.80902 1.19449 1.21449 1.19575 1.20865 0.78197 0.86191 0.87321 1.90518 1.58526 1.15665 1.86034 1.22410 0.98850 1.00327 0.91726 0.85840 1.22807 0.96681 0.98290 0.95728 1.22614 0.91327 0.99482 0.97982 0.81871 1.23949 0.83248 0.87882 0.73100 1.90643 1.81305 1.17819 1.53017 1.86529 1.25909 1.42075 1.73081 1.23559 0.89312 0.94563 0.99309 1.22594 0.94528 1.03299 0.92521 0.92804 0.93874 0.89399 0.90766 0.93816 0.91968 0.89524 0.91610 0.88277 0.90490 0.92637 0.84826 0.91626 0.91780 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.39 -16.37 10.18 -148.98 -1.52 -17.89 16 3 C 0.06 2.36 6.28 71.98 0.45 2.81 16 4 C 0.09 3.91 4.63 86.38 0.40 4.31 16 5 N -0.47 -21.96 2.14 -635.51 -1.36 -23.32 16 6 C -0.31 -15.71 8.62 84.04 0.72 -14.98 16 7 H 0.09 4.67 6.85 -2.91 -0.02 4.65 16 8 C 0.04 2.02 5.36 84.93 0.46 2.48 16 9 N -0.90 -49.36 13.96 21.66 0.30 -49.06 16 10 Si 0.92 42.34 24.83 68.60 1.70 44.04 16 11 H -0.27 -11.95 6.74 99.48 0.67 -11.28 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.70 7.10 99.48 0.71 -12.00 16 14 C 0.48 21.92 7.14 87.66 0.63 22.55 16 15 O -0.62 -30.73 15.44 -3.07 -0.05 -30.77 16 16 C -0.11 -4.09 3.18 -11.01 -0.04 -4.13 16 17 H 0.12 4.28 6.96 -2.38 -0.02 4.27 16 18 C -0.10 -3.11 6.78 31.12 0.21 -2.90 16 19 C -0.10 -2.60 4.26 -11.01 -0.05 -2.64 16 20 H 0.16 3.22 8.14 -2.38 -0.02 3.20 16 21 C 0.47 14.11 7.48 71.24 0.53 14.64 16 22 O -0.54 -19.34 15.65 21.96 0.34 -19.00 16 23 O -0.36 -9.13 10.57 -51.36 -0.54 -9.68 16 24 C 0.03 0.48 10.56 113.37 1.20 1.67 16 25 C -0.09 -3.00 7.18 31.12 0.22 -2.77 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.06 2.84 3.20 -2.38 -0.01 2.84 16 32 H 0.09 3.70 7.36 -2.39 -0.02 3.68 16 33 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.08 2.99 6.65 -2.39 -0.02 2.97 16 36 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 37 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 39 H 0.06 2.34 8.05 -2.39 -0.02 2.33 16 40 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -68.27 333.11 5.87 -62.39 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.00 Total: 20.18 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 5.99 Total: 23.10 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.06 Total: -72.38 kcal Atomic # 8 Polarization: -75.58 SS G_CDS: -1.76 Total: -77.34 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.70 Total: 44.04 kcal Total: -68.27 5.87 -62.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353713005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.386 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds