Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47201 * 2 1 4 4 C 1.35027 * 126.39858 * 265.19182 * 3 2 1 5 5 N 1.30524 * 108.72566 * 180.02562 * 4 3 2 6 6 C 1.34157 * 109.27516 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 125.99558 * 179.97438 * 6 5 4 8 8 C 1.34755 * 108.00817 * 359.97438 * 6 5 4 9 9 C 1.50697 * 126.60406 * 180.02562 * 8 6 5 10 10 N 1.46900 * 109.47178 * 277.54643 * 9 8 6 11 11 C 1.46897 * 110.99793 * 164.76552 * 10 9 8 12 12 C 1.50709 * 109.47071 * 197.98229 * 11 10 9 13 13 H 1.08000 * 119.99440 * 5.46882 * 12 11 10 14 14 C 1.37879 * 119.99904 * 185.46970 * 12 11 10 15 15 N 1.31508 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99600 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47258 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47096 * 119.99925 * 16 14 12 19 19 H 1.48504 * 109.46967 * 239.99819 * 16 14 12 20 20 C 1.46900 * 111.00312 * 288.72367 * 10 9 8 21 21 C 1.53005 * 109.46869 * 170.39473 * 20 10 9 22 22 C 1.52998 * 109.46867 * 290.39811 * 20 10 9 23 23 H 1.09003 * 109.47146 * 299.99656 * 1 2 3 24 24 H 1.08996 * 109.47548 * 60.00114 * 1 2 3 25 25 H 1.08999 * 109.47443 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47317 * 239.99643 * 2 1 3 27 27 H 1.09010 * 109.47361 * 119.99928 * 2 1 3 28 28 H 1.07993 * 125.63041 * 0.04402 * 4 3 2 29 29 H 1.08995 * 109.47538 * 37.55261 * 9 8 6 30 30 H 1.09003 * 109.46592 * 157.55141 * 9 8 6 31 31 H 1.08992 * 109.47434 * 317.98134 * 11 10 9 32 32 H 1.08993 * 109.47173 * 77.98726 * 11 10 9 33 33 H 0.97003 * 119.99348 * 180.02562 * 15 14 12 34 34 H 1.08995 * 109.46808 * 50.39594 * 20 10 9 35 35 H 1.09000 * 109.46899 * 69.46703 * 21 20 10 36 36 H 1.09003 * 109.46839 * 189.46450 * 21 20 10 37 37 H 1.08994 * 109.47156 * 309.46232 * 21 20 10 38 38 H 1.08994 * 109.47341 * 55.25807 * 22 20 10 39 39 H 1.09006 * 109.46734 * 175.26142 * 22 20 10 40 40 H 1.09001 * 109.46737 * 295.25509 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3712 2.1062 -1.0830 5 7 2.7550 3.2896 -0.6881 6 6 2.6624 3.3622 0.6483 7 17 3.0640 4.7396 1.6256 8 6 2.2030 2.1782 1.0989 9 6 1.9424 1.8032 2.5350 10 7 3.2013 1.3900 3.1694 11 6 3.0702 1.3650 4.6323 12 6 4.4404 1.3772 5.2598 13 1 5.3173 1.4902 4.6395 14 6 4.5744 1.2441 6.6256 15 7 3.5065 1.1070 7.3807 16 14 6.2728 1.2586 7.4032 17 1 7.3007 1.4241 6.3442 18 1 6.3670 2.3856 8.3656 19 1 6.5009 -0.0231 8.1178 20 6 3.6455 0.0864 2.6582 21 6 5.0643 -0.1995 3.1545 22 6 2.6997 -1.0069 3.1593 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.3407 1.7636 -2.1067 29 1 1.5326 2.6621 3.0663 30 1 1.2296 0.9793 2.5717 31 1 2.5118 2.2409 4.9621 32 1 2.5405 0.4615 4.9342 33 1 3.6008 1.0137 8.3416 34 1 3.6380 0.1019 1.5684 35 1 5.0435 -0.3814 4.2291 36 1 5.4572 -1.0791 2.6446 37 1 5.7028 0.6582 2.9435 38 1 1.6764 -0.7594 2.8774 39 1 2.9789 -1.9614 2.7128 40 1 2.7704 -1.0790 4.2446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461896793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = 63.820998 kcal Electronic energy + Delta-G solvation = -21663.867959 eV Core-core repulsion = 18541.106916 eV Total energy + Delta-G solvation = -3122.761043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.08074 -37.86825 -36.11588 -34.85771 -32.67095 -31.90689 -30.10173 -29.37081 -27.37534 -26.27327 -24.43414 -23.81684 -22.24120 -21.32360 -20.02609 -18.56655 -17.16617 -16.31779 -15.85144 -15.35374 -15.00802 -14.61180 -14.19656 -13.99740 -13.81821 -13.58169 -13.25825 -12.97756 -12.40459 -12.23465 -12.12250 -11.74625 -11.52926 -11.35225 -11.26469 -11.16701 -10.91236 -10.74914 -10.74434 -10.66524 -10.32856 -10.24093 -9.76045 -9.51588 -9.38335 -9.04361 -8.38340 -8.02003 -7.25021 -6.00991 -3.97213 2.05902 2.30896 3.00513 3.14510 3.31504 3.40193 3.45141 4.43783 4.47566 4.72154 4.75593 4.84452 4.98535 5.05755 5.28443 5.33817 5.37421 5.41106 5.58348 5.71954 5.75685 5.85467 5.95364 5.99474 6.17870 6.36308 6.46627 6.50232 6.52662 6.66784 6.92116 7.16536 7.20424 7.38233 7.44819 7.85330 8.02193 8.11366 8.16846 8.53694 9.07991 9.62630 11.09490 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.005907 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.072600 B = 4738.747225 C = 5554.424134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 N -0.451 5.451 4 C 0.186 3.814 5 N -0.488 5.488 6 C 0.060 3.940 7 Cl -0.009 7.009 8 C 0.029 3.971 9 C 0.122 3.878 10 N -0.519 5.519 11 C 0.187 3.813 12 C -0.495 4.495 13 H 0.073 0.927 14 C 0.052 3.948 15 N -0.901 5.901 16 Si 0.890 3.110 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.287 1.287 20 C 0.091 3.909 21 C -0.141 4.141 22 C -0.189 4.189 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.207 0.793 29 H 0.093 0.907 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.009 0.991 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 -4.032 -14.638 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.032 4.032 3 N -0.136 5.136 4 C -0.096 4.096 5 N -0.208 5.208 6 C -0.095 4.095 7 Cl 0.019 6.981 8 C -0.087 4.087 9 C -0.007 4.007 10 N -0.243 5.243 11 C 0.062 3.938 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.148 4.148 15 N -0.541 5.541 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.213 1.213 20 C -0.018 4.018 21 C -0.198 4.198 22 C -0.248 4.248 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.223 0.777 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.430 -3.085 -14.978 16.228 hybrid contribution 0.000 -1.114 1.170 1.616 sum -5.430 -4.199 -13.808 15.420 Atomic orbital electron populations 1.22158 0.94013 1.03171 1.03310 1.22068 0.95774 0.79942 1.05375 1.45409 1.48983 1.12503 1.06702 1.24668 1.03699 0.87619 0.93622 1.69898 1.21016 1.19215 1.10623 1.20322 1.09128 0.90562 0.89452 1.98356 1.92775 1.40540 1.66380 1.20946 1.06694 0.90768 0.90319 1.20517 0.93097 1.00488 0.86597 1.62366 1.25935 1.26635 1.09345 1.19889 0.97943 0.96566 0.79388 1.21385 0.93014 1.47621 0.91350 0.90876 1.24958 0.96548 0.95980 0.97316 1.69962 1.28145 1.50947 1.05028 0.86549 0.84767 0.77414 0.79412 1.19577 1.21131 1.21287 1.21468 0.95879 0.87698 0.96772 1.22155 0.94558 0.98925 1.04163 1.22551 0.98973 0.99079 1.04155 0.91593 0.91831 0.90523 0.88707 0.88094 0.77657 0.88870 0.94642 0.95750 0.97302 0.93143 0.93093 0.88748 0.95540 0.92506 0.93890 0.93438 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.15 0.38 -0.97 16 2 C 0.09 0.85 5.98 -4.05 -0.02 0.83 16 3 N -0.45 -5.84 2.51 -113.94 -0.29 -6.13 16 4 C 0.19 2.39 12.56 -90.37 -1.13 1.25 16 5 N -0.49 -8.16 11.25 -11.79 -0.13 -8.29 16 6 C 0.06 1.07 7.70 -17.77 -0.14 0.93 16 7 Cl -0.01 -0.16 29.09 -51.86 -1.51 -1.66 16 8 C 0.03 0.48 5.60 -81.52 -0.46 0.02 16 9 C 0.12 2.14 4.93 -4.98 -0.02 2.11 16 10 N -0.52 -10.47 4.44 -229.53 -1.02 -11.48 16 11 C 0.19 4.49 4.50 -4.97 -0.02 4.47 16 12 C -0.50 -13.02 6.52 -34.44 -0.22 -13.24 16 13 H 0.07 1.94 5.68 -52.49 -0.30 1.64 16 14 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 15 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.09 1.63 2.46 -67.71 -0.17 1.46 16 21 C -0.14 -2.71 7.71 37.16 0.29 -2.43 16 22 C -0.19 -3.07 7.38 37.16 0.27 -2.80 16 23 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.10 1.08 4.15 -51.92 -0.22 0.87 16 28 H 0.21 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.09 1.70 7.72 -51.93 -0.40 1.30 16 30 H 0.04 0.57 5.54 -51.93 -0.29 0.28 16 31 H 0.02 0.64 7.69 -51.93 -0.40 0.24 16 32 H 0.01 0.23 5.58 -51.93 -0.29 -0.06 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.05 0.86 5.56 -51.93 -0.29 0.57 16 35 H 0.09 2.07 5.71 -51.93 -0.30 1.77 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.17 7.35 -51.93 -0.38 0.79 16 38 H 0.04 0.63 5.47 -51.93 -0.28 0.35 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.54 6.30 -51.93 -0.33 1.21 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -30.31 324.30 -9.25 -39.56 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.56 Total: -1.05 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.35 Total: -7.03 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.70 Total: -50.90 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.31 -9.25 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461896793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.383 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds