Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47201 * 2 1 4 4 C 1.35027 * 126.39858 * 265.19182 * 3 2 1 5 5 N 1.30524 * 108.72566 * 180.02562 * 4 3 2 6 6 C 1.34157 * 109.27516 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 125.99558 * 179.97438 * 6 5 4 8 8 C 1.34755 * 108.00817 * 359.97438 * 6 5 4 9 9 C 1.50697 * 126.60406 * 180.02562 * 8 6 5 10 10 N 1.46900 * 109.47178 * 277.54643 * 9 8 6 11 11 C 1.46897 * 110.99793 * 164.76552 * 10 9 8 12 12 C 1.50709 * 109.47071 * 197.98229 * 11 10 9 13 13 H 1.08000 * 119.99440 * 5.46882 * 12 11 10 14 14 C 1.37879 * 119.99904 * 185.46970 * 12 11 10 15 15 N 1.31508 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99600 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47258 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47096 * 119.99925 * 16 14 12 19 19 H 1.48504 * 109.46967 * 239.99819 * 16 14 12 20 20 C 1.46900 * 111.00312 * 288.72367 * 10 9 8 21 21 C 1.53005 * 109.46869 * 170.39473 * 20 10 9 22 22 C 1.52998 * 109.46867 * 290.39811 * 20 10 9 23 23 H 1.09003 * 109.47146 * 299.99656 * 1 2 3 24 24 H 1.08996 * 109.47548 * 60.00114 * 1 2 3 25 25 H 1.08999 * 109.47443 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47317 * 239.99643 * 2 1 3 27 27 H 1.09010 * 109.47361 * 119.99928 * 2 1 3 28 28 H 1.07993 * 125.63041 * 0.04402 * 4 3 2 29 29 H 1.08995 * 109.47538 * 37.55261 * 9 8 6 30 30 H 1.09003 * 109.46592 * 157.55141 * 9 8 6 31 31 H 1.08992 * 109.47434 * 317.98134 * 11 10 9 32 32 H 1.08993 * 109.47173 * 77.98726 * 11 10 9 33 33 H 0.97003 * 119.99348 * 180.02562 * 15 14 12 34 34 H 1.08995 * 109.46808 * 50.39594 * 20 10 9 35 35 H 1.09000 * 109.46899 * 69.46703 * 21 20 10 36 36 H 1.09003 * 109.46839 * 189.46450 * 21 20 10 37 37 H 1.08994 * 109.47156 * 309.46232 * 21 20 10 38 38 H 1.08994 * 109.47341 * 55.25807 * 22 20 10 39 39 H 1.09006 * 109.46734 * 175.26142 * 22 20 10 40 40 H 1.09001 * 109.46737 * 295.25509 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3712 2.1062 -1.0830 5 7 2.7550 3.2896 -0.6881 6 6 2.6624 3.3622 0.6483 7 17 3.0640 4.7396 1.6256 8 6 2.2030 2.1782 1.0989 9 6 1.9424 1.8032 2.5350 10 7 3.2013 1.3900 3.1694 11 6 3.0702 1.3650 4.6323 12 6 4.4404 1.3772 5.2598 13 1 5.3173 1.4902 4.6395 14 6 4.5744 1.2441 6.6256 15 7 3.5065 1.1070 7.3807 16 14 6.2728 1.2586 7.4032 17 1 7.3007 1.4241 6.3442 18 1 6.3670 2.3856 8.3656 19 1 6.5009 -0.0231 8.1178 20 6 3.6455 0.0864 2.6582 21 6 5.0643 -0.1995 3.1545 22 6 2.6997 -1.0069 3.1593 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.3407 1.7636 -2.1067 29 1 1.5326 2.6621 3.0663 30 1 1.2296 0.9793 2.5717 31 1 2.5118 2.2409 4.9621 32 1 2.5405 0.4615 4.9342 33 1 3.6008 1.0137 8.3416 34 1 3.6380 0.1019 1.5684 35 1 5.0435 -0.3814 4.2291 36 1 5.4572 -1.0791 2.6446 37 1 5.7028 0.6582 2.9435 38 1 1.6764 -0.7594 2.8774 39 1 2.9789 -1.9614 2.7128 40 1 2.7704 -1.0790 4.2446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461896793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = 45.986665 kcal Electronic energy + Delta-G solvation = -21664.641314 eV Core-core repulsion = 18541.106916 eV Total energy + Delta-G solvation = -3123.534398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.20155 -39.42921 -37.42372 -35.82098 -34.67968 -33.30953 -31.21191 -30.71685 -29.02584 -27.79720 -25.90742 -24.69770 -24.03146 -22.45069 -21.25839 -20.00468 -18.54320 -18.01800 -17.13656 -16.67318 -16.49091 -16.10938 -15.48075 -15.21351 -15.03090 -14.99697 -14.45070 -14.10458 -13.93306 -13.69951 -13.26542 -13.08172 -13.02350 -12.78574 -12.61052 -12.55228 -12.48268 -12.45761 -12.21900 -12.06747 -11.92684 -11.85611 -11.28734 -11.00456 -10.90896 -10.51708 -10.46707 -9.26796 -8.87595 -8.10185 -6.11847 0.89991 1.10622 1.40474 1.43861 1.54987 1.97392 1.97933 2.45465 3.22202 3.35828 3.66104 3.81438 3.90696 4.00290 4.09433 4.16272 4.32143 4.37297 4.44421 4.56724 4.59836 4.79071 4.82116 4.86931 4.98634 5.00531 5.13847 5.20221 5.23289 5.26154 5.33958 5.38019 5.61372 5.76832 5.80642 6.17778 6.23070 6.47171 6.69130 6.90737 6.99726 7.51517 8.99928 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.005907 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.072600 B = 4738.747225 C = 5554.424134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.084 3.916 3 N -0.445 5.445 4 C 0.212 3.788 5 N -0.526 5.526 6 C 0.038 3.962 7 Cl -0.029 7.029 8 C 0.018 3.982 9 C 0.131 3.869 10 N -0.531 5.531 11 C 0.204 3.796 12 C -0.494 4.494 13 H 0.068 0.932 14 C 0.003 3.997 15 N -0.935 5.935 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.280 1.280 20 C 0.092 3.908 21 C -0.136 4.136 22 C -0.177 4.177 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.135 0.865 27 H 0.089 0.911 28 H 0.257 0.743 29 H 0.074 0.926 30 H 0.051 0.949 31 H -0.007 1.007 32 H -0.004 1.004 33 H 0.259 0.741 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 -6.019 -17.310 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.036 4.036 3 N -0.129 5.129 4 C -0.071 4.071 5 N -0.247 5.247 6 C -0.117 4.117 7 Cl -0.001 7.001 8 C -0.099 4.099 9 C 0.002 3.998 10 N -0.255 5.255 11 C 0.079 3.921 12 C -0.533 4.533 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.577 5.577 16 Si 0.776 3.224 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.206 1.206 20 C -0.017 4.017 21 C -0.193 4.193 22 C -0.235 4.235 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.153 0.847 27 H 0.107 0.893 28 H 0.273 0.727 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.011 0.989 32 H 0.013 0.987 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.364 -5.093 -17.666 19.152 hybrid contribution -0.064 -0.544 1.854 1.933 sum -5.428 -5.637 -15.812 17.643 Atomic orbital electron populations 1.22138 0.92965 1.04465 1.02607 1.22422 0.96628 0.77859 1.06733 1.45628 1.48239 1.13519 1.05500 1.25655 1.00089 0.86140 0.95170 1.69872 1.23209 1.21621 1.09959 1.20503 1.10347 0.90564 0.90242 1.98337 1.92981 1.41725 1.67074 1.20573 1.07765 0.91167 0.90438 1.20326 0.92088 1.00144 0.87283 1.62217 1.27769 1.28495 1.07006 1.19492 0.96222 0.94324 0.82095 1.21620 0.93757 1.46392 0.91523 0.91382 1.25677 0.99740 0.96020 0.97967 1.70071 1.30022 1.52421 1.05191 0.85617 0.80910 0.77391 0.78462 1.19058 1.21248 1.20611 1.21525 0.95362 0.87056 0.97726 1.22030 0.95373 0.99441 1.02505 1.22398 0.99459 0.99980 1.01701 0.93852 0.90989 0.88229 0.84747 0.89255 0.72684 0.90798 0.93095 0.98934 0.98660 0.93178 0.90950 0.91851 0.92367 0.94455 0.92433 0.90350 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.24 71.98 0.74 -1.27 16 2 C 0.08 1.20 5.98 86.38 0.52 1.72 16 3 N -0.45 -10.06 2.51 -514.40 -1.29 -11.35 16 4 C 0.21 4.63 12.56 180.26 2.26 6.89 16 5 N -0.53 -16.65 11.25 -191.23 -2.15 -18.80 16 6 C 0.04 1.33 7.70 83.54 0.64 1.98 16 7 Cl -0.03 -1.09 29.09 -2.72 -0.08 -1.16 16 8 C 0.02 0.58 5.60 40.95 0.23 0.81 16 9 C 0.13 4.58 4.93 85.56 0.42 5.00 16 10 N -0.53 -21.64 4.44 -880.09 -3.91 -25.55 16 11 C 0.20 10.23 4.50 85.56 0.39 10.61 16 12 C -0.49 -26.74 6.52 25.60 0.17 -26.58 16 13 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.94 -54.98 13.29 21.45 0.28 -54.70 16 16 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 C 0.09 3.17 2.46 44.92 0.11 3.28 16 21 C -0.14 -5.13 7.71 71.98 0.56 -4.57 16 22 C -0.18 -5.46 7.38 71.98 0.53 -4.92 16 23 H 0.04 0.74 8.00 -2.39 -0.02 0.72 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.13 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.09 1.54 4.15 -2.38 -0.01 1.53 16 28 H 0.26 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.07 2.84 7.72 -2.39 -0.02 2.82 16 30 H 0.05 1.60 5.54 -2.39 -0.01 1.59 16 31 H -0.01 -0.41 7.69 -2.39 -0.02 -0.43 16 32 H 0.00 -0.22 5.58 -2.39 -0.01 -0.24 16 33 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.07 2.22 5.56 -2.39 -0.01 2.21 16 35 H 0.06 2.79 5.71 -2.39 -0.01 2.77 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.52 7.35 -2.39 -0.02 1.50 16 38 H 0.06 1.58 5.47 -2.39 -0.01 1.57 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.04 1.64 6.30 -2.39 -0.02 1.63 16 Total: -1.00 -68.79 324.30 2.95 -65.84 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.05 Total: 5.85 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 7.02 Total: -6.44 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -7.07 Total: -110.40 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -68.79 2.95 -65.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461896793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.830 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds