Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34232 * 117.00363 * 2 1 4 4 O 1.20832 * 119.99302 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00117 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47401 * 60.00521 * 5 3 2 7 7 C 1.52995 * 109.47024 * 299.99874 * 5 3 2 8 8 O 1.42898 * 109.47575 * 305.86087 * 7 5 3 9 9 C 1.42894 * 114.00294 * 179.97438 * 8 7 5 10 10 C 1.53780 * 113.61654 * 249.14188 * 9 8 7 11 11 C 1.53958 * 87.02174 * 220.04726 * 10 9 8 12 12 C 1.53781 * 87.10912 * 25.36052 * 11 10 9 13 13 N 1.46509 * 109.46511 * 180.02562 * 5 3 2 14 14 C 1.46491 * 120.00323 * 53.99263 * 13 5 3 15 15 C 1.34779 * 119.99307 * 233.98834 * 13 5 3 16 16 O 1.21687 * 120.00221 * 0.02562 * 15 13 5 17 17 C 1.46379 * 119.99743 * 180.02562 * 15 13 5 18 18 H 1.08003 * 119.99622 * 354.07888 * 17 15 13 19 19 C 1.40047 * 119.99775 * 173.80085 * 17 15 13 20 20 N 1.30666 * 120.00204 * 5.33479 * 19 17 15 21 21 Si 1.86800 * 119.99688 * 185.33813 * 19 17 15 22 22 H 1.48500 * 109.47120 * 94.99292 * 21 19 17 23 23 H 1.48499 * 109.46919 * 214.99430 * 21 19 17 24 24 H 1.48504 * 109.47034 * 334.99408 * 21 19 17 25 25 H 1.09003 * 109.47019 * 299.99451 * 1 2 3 26 26 H 1.08998 * 109.47837 * 59.99672 * 1 2 3 27 27 H 1.09004 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47147 * 65.86726 * 7 5 3 29 29 H 1.09006 * 109.46994 * 185.86410 * 7 5 3 30 30 H 1.09005 * 112.84995 * 20.34115 * 9 8 7 31 31 H 1.09000 * 113.61848 * 334.56293 * 10 9 8 32 32 H 1.09003 * 113.61647 * 105.47017 * 10 9 8 33 33 H 1.08999 * 113.53822 * 270.81311 * 11 10 9 34 34 H 1.08994 * 113.67076 * 139.93088 * 11 10 9 35 35 H 1.09003 * 113.61673 * 220.08721 * 12 11 10 36 36 H 1.09006 * 113.68874 * 89.20001 * 12 11 10 37 37 H 1.09003 * 109.47054 * 264.59888 * 14 13 5 38 38 H 1.09001 * 109.47530 * 24.60126 * 14 13 5 39 39 H 1.09004 * 109.47265 * 144.60601 * 14 13 5 40 40 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7810 -0.8908 7 6 4.1138 0.5810 1.2483 8 8 3.4989 1.1388 2.4114 9 6 3.9425 0.5572 3.6389 10 6 2.8673 -0.2851 4.3455 11 6 3.3756 0.3202 5.6666 12 6 3.8692 1.5177 4.8376 13 7 3.9816 2.6798 0.0002 14 6 3.4745 3.5930 1.0272 15 6 4.8304 3.1319 -0.9441 16 8 5.2513 2.3734 -1.7975 17 6 5.2458 4.5355 -0.9432 18 1 4.8001 5.2301 -0.2464 19 6 6.2254 4.9764 -1.8417 20 7 6.6934 4.1616 -2.7497 21 14 6.8630 6.7294 -1.7420 22 1 8.1031 6.7594 -0.9256 23 1 7.1585 7.2271 -3.1095 24 1 5.8343 7.5952 -1.1116 25 1 -0.3633 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.8942 -0.4854 1.1972 29 1 5.1926 0.7276 1.3019 30 1 4.9025 0.0496 3.5443 31 1 1.8480 0.0083 4.0945 32 1 3.0316 -1.3597 4.2648 33 1 4.1801 -0.2532 6.1271 34 1 2.5797 0.5726 6.3672 35 1 4.8412 1.8967 5.1537 36 1 3.1253 2.3059 4.7208 37 1 2.6058 4.1268 0.6418 38 1 3.1881 3.0229 1.9110 39 1 4.2523 4.3089 1.2929 40 1 7.3721 4.4670 -3.3718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466048456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -134.574467 kcal Electronic energy + Delta-G solvation = -23881.381449 eV Core-core repulsion = 20277.015417 eV Total energy + Delta-G solvation = -3604.366032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23762 -39.13198 -37.77418 -36.01565 -35.88710 -33.64966 -32.46696 -30.39730 -27.42411 -26.17332 -25.67149 -25.48180 -24.43455 -23.50593 -20.91658 -19.69913 -18.99217 -17.63248 -16.74196 -16.45327 -16.32038 -16.04543 -15.55045 -15.46171 -14.79919 -14.45108 -14.09652 -13.76696 -13.57918 -13.09960 -12.57966 -12.48052 -12.45531 -12.05338 -12.00968 -11.75083 -11.63300 -11.42493 -11.24364 -11.14186 -10.97842 -10.75569 -10.64106 -10.45388 -10.41495 -10.26448 -10.14568 -9.90862 -9.22687 -8.86901 -7.67173 -7.29461 -6.23528 -4.66212 2.72320 3.00325 3.14320 3.21540 3.26046 3.80547 4.07475 4.45803 4.51747 4.56957 4.59948 4.83441 4.84444 5.13859 5.25716 5.28111 5.33342 5.38320 5.60218 5.62093 5.63586 5.73828 5.76502 5.79448 5.90643 5.91845 5.97952 6.11942 6.25558 6.45516 6.68799 6.78869 6.97179 7.39757 7.43953 7.53137 8.02397 8.26175 8.35037 9.00177 9.33871 10.50581 10.70140 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.005346 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.594853 B = 5236.337920 C = 6259.426617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.365 6.365 3 C 0.459 3.541 4 O -0.494 6.494 5 C 0.164 3.836 6 H 0.140 0.860 7 C 0.061 3.939 8 O -0.365 6.365 9 C 0.061 3.939 10 C -0.156 4.156 11 C -0.142 4.142 12 C -0.136 4.136 13 N -0.620 5.620 14 C 0.102 3.898 15 C 0.556 3.444 16 O -0.581 6.581 17 C -0.533 4.533 18 H 0.075 0.925 19 C 0.087 3.913 20 N -0.766 5.766 21 Si 0.909 3.091 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.263 1.263 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -8.481 13.127 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.299 3.701 4 O -0.379 6.379 5 C 0.056 3.944 6 H 0.158 0.842 7 C -0.017 4.017 8 O -0.284 6.284 9 C 0.003 3.997 10 C -0.194 4.194 11 C -0.180 4.180 12 C -0.174 4.174 13 N -0.358 5.358 14 C -0.041 4.041 15 C 0.364 3.636 16 O -0.464 6.464 17 C -0.570 4.570 18 H 0.093 0.907 19 C -0.133 4.133 20 N -0.394 5.394 21 Si 0.733 3.267 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.187 1.187 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.903 -8.443 12.475 16.569 hybrid contribution 0.148 0.737 0.057 0.754 sum -6.755 -7.706 12.532 16.188 Atomic orbital electron populations 1.23121 0.77519 1.02843 1.02171 1.86516 1.22595 1.34384 1.84680 1.24621 0.92566 0.81130 0.71772 1.90613 1.66763 1.36204 1.44365 1.20284 0.85633 0.89043 0.99477 0.84246 1.23004 0.97812 0.96421 0.84442 1.88011 1.65845 1.61232 1.13337 1.23695 0.96853 0.95088 0.84034 1.23499 1.00402 0.99542 0.95956 1.22681 1.00981 0.97953 0.96339 1.23181 1.02252 0.97448 0.94488 1.47852 1.49643 1.05540 1.32727 1.21591 0.98214 0.93578 0.90740 1.18381 0.76938 0.89374 0.78947 1.90584 1.58518 1.58515 1.38777 1.20968 1.23112 0.92751 1.20129 0.90680 1.25751 0.95282 0.98640 0.93645 1.70023 1.21675 1.35330 1.12417 0.86335 0.79563 0.82676 0.78117 1.19753 1.20421 1.18735 0.92332 0.92315 0.88745 0.92104 0.91342 0.89680 0.89517 0.91560 0.90223 0.91058 0.91068 0.89175 0.94335 0.91381 0.92148 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.54 16 2 O -0.37 -5.96 10.49 -39.26 -0.41 -6.37 16 3 C 0.46 8.95 6.63 36.00 0.24 9.19 16 4 O -0.49 -10.84 14.25 -18.76 -0.27 -11.11 16 5 C 0.16 3.33 3.07 -69.08 -0.21 3.12 16 6 H 0.14 3.00 6.92 -51.93 -0.36 2.64 16 7 C 0.06 1.00 5.51 37.15 0.20 1.20 16 8 O -0.37 -5.76 6.97 -35.23 -0.25 -6.01 16 9 C 0.06 0.75 4.29 -25.92 -0.11 0.64 16 10 C -0.16 -1.63 7.93 -25.83 -0.20 -1.83 16 11 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 12 C -0.14 -1.49 7.91 -25.92 -0.21 -1.70 16 13 N -0.62 -14.75 2.59 -176.93 -0.46 -15.21 16 14 C 0.10 2.18 8.27 59.84 0.49 2.67 16 15 C 0.56 15.97 7.61 -12.98 -0.10 15.87 16 16 O -0.58 -18.43 14.38 5.20 0.07 -18.35 16 17 C -0.53 -15.19 8.67 -35.63 -0.31 -15.50 16 18 H 0.08 2.00 6.23 -52.48 -0.33 1.67 16 19 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 20 N -0.77 -22.74 11.85 55.55 0.66 -22.09 16 21 Si 0.91 20.20 29.56 -169.99 -5.03 15.18 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.86 7.36 -51.93 -0.38 0.47 16 38 H 0.07 1.33 5.21 -51.93 -0.27 1.05 16 39 H 0.06 1.28 6.50 -51.93 -0.34 0.94 16 40 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -34.90 333.38 -5.96 -40.86 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.87 Total: 2.03 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 0.56 Total: 16.04 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.20 Total: -37.29 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.85 Total: -41.84 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.90 -5.96 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466048456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.715 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds