Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34232 * 117.00363 * 2 1 4 4 O 1.20832 * 119.99302 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00117 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47401 * 60.00521 * 5 3 2 7 7 C 1.52995 * 109.47024 * 299.99874 * 5 3 2 8 8 O 1.42898 * 109.47575 * 305.86087 * 7 5 3 9 9 C 1.42894 * 114.00294 * 179.97438 * 8 7 5 10 10 C 1.53780 * 113.61654 * 249.14188 * 9 8 7 11 11 C 1.53958 * 87.02174 * 220.04726 * 10 9 8 12 12 C 1.53781 * 87.10912 * 25.36052 * 11 10 9 13 13 N 1.46509 * 109.46511 * 180.02562 * 5 3 2 14 14 C 1.46491 * 120.00323 * 53.99263 * 13 5 3 15 15 C 1.34779 * 119.99307 * 233.98834 * 13 5 3 16 16 O 1.21687 * 120.00221 * 0.02562 * 15 13 5 17 17 C 1.46379 * 119.99743 * 180.02562 * 15 13 5 18 18 H 1.08003 * 119.99622 * 354.07888 * 17 15 13 19 19 C 1.40047 * 119.99775 * 173.80085 * 17 15 13 20 20 N 1.30666 * 120.00204 * 5.33479 * 19 17 15 21 21 Si 1.86800 * 119.99688 * 185.33813 * 19 17 15 22 22 H 1.48500 * 109.47120 * 94.99292 * 21 19 17 23 23 H 1.48499 * 109.46919 * 214.99430 * 21 19 17 24 24 H 1.48504 * 109.47034 * 334.99408 * 21 19 17 25 25 H 1.09003 * 109.47019 * 299.99451 * 1 2 3 26 26 H 1.08998 * 109.47837 * 59.99672 * 1 2 3 27 27 H 1.09004 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47147 * 65.86726 * 7 5 3 29 29 H 1.09006 * 109.46994 * 185.86410 * 7 5 3 30 30 H 1.09005 * 112.84995 * 20.34115 * 9 8 7 31 31 H 1.09000 * 113.61848 * 334.56293 * 10 9 8 32 32 H 1.09003 * 113.61647 * 105.47017 * 10 9 8 33 33 H 1.08999 * 113.53822 * 270.81311 * 11 10 9 34 34 H 1.08994 * 113.67076 * 139.93088 * 11 10 9 35 35 H 1.09003 * 113.61673 * 220.08721 * 12 11 10 36 36 H 1.09006 * 113.68874 * 89.20001 * 12 11 10 37 37 H 1.09003 * 109.47054 * 264.59888 * 14 13 5 38 38 H 1.09001 * 109.47530 * 24.60126 * 14 13 5 39 39 H 1.09004 * 109.47265 * 144.60601 * 14 13 5 40 40 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7810 -0.8908 7 6 4.1138 0.5810 1.2483 8 8 3.4989 1.1388 2.4114 9 6 3.9425 0.5572 3.6389 10 6 2.8673 -0.2851 4.3455 11 6 3.3756 0.3202 5.6666 12 6 3.8692 1.5177 4.8376 13 7 3.9816 2.6798 0.0002 14 6 3.4745 3.5930 1.0272 15 6 4.8304 3.1319 -0.9441 16 8 5.2513 2.3734 -1.7975 17 6 5.2458 4.5355 -0.9432 18 1 4.8001 5.2301 -0.2464 19 6 6.2254 4.9764 -1.8417 20 7 6.6934 4.1616 -2.7497 21 14 6.8630 6.7294 -1.7420 22 1 8.1031 6.7594 -0.9256 23 1 7.1585 7.2271 -3.1095 24 1 5.8343 7.5952 -1.1116 25 1 -0.3633 0.5138 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.8942 -0.4854 1.1972 29 1 5.1926 0.7276 1.3019 30 1 4.9025 0.0496 3.5443 31 1 1.8480 0.0083 4.0945 32 1 3.0316 -1.3597 4.2648 33 1 4.1801 -0.2532 6.1271 34 1 2.5797 0.5726 6.3672 35 1 4.8412 1.8967 5.1537 36 1 3.1253 2.3059 4.7208 37 1 2.6058 4.1268 0.6418 38 1 3.1881 3.0229 1.9110 39 1 4.2523 4.3089 1.2929 40 1 7.3721 4.4670 -3.3718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466048456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -157.750412 kcal Electronic energy + Delta-G solvation = -23882.386433 eV Core-core repulsion = 20277.015417 eV Total energy + Delta-G solvation = -3605.371016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.76002 -40.18868 -39.57955 -37.57596 -37.17912 -35.45773 -34.62788 -32.00398 -28.66480 -28.15951 -27.13291 -26.51839 -25.58369 -24.86890 -22.63710 -20.85903 -20.48344 -19.14157 -18.28047 -18.03331 -17.92301 -17.58724 -17.30174 -16.56833 -16.19197 -15.89980 -15.72919 -15.21398 -15.01604 -14.54412 -14.28044 -13.92295 -13.46154 -13.44195 -13.33747 -13.24813 -13.08154 -12.97435 -12.91337 -12.75369 -12.51474 -12.22570 -12.02281 -11.92135 -11.78457 -11.68026 -11.44390 -11.24113 -10.94180 -10.36347 -9.86859 -9.22346 -8.33246 -6.87642 1.16848 1.39030 1.39871 1.55202 1.61462 2.23199 2.41914 2.61219 2.72373 3.53801 3.69104 3.72916 3.77660 3.92618 3.99822 4.03601 4.25514 4.31295 4.32456 4.36170 4.49093 4.59302 4.68123 4.72314 4.86111 4.89289 4.98351 5.07801 5.07852 5.12979 5.29399 5.31981 5.36405 5.43872 5.64159 6.02137 6.21603 6.32227 6.75549 6.84546 7.27679 8.36454 8.61802 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.005346 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.594853 B = 5236.337920 C = 6259.426617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.524 6.524 5 C 0.153 3.847 6 H 0.121 0.879 7 C 0.075 3.925 8 O -0.384 6.384 9 C 0.045 3.955 10 C -0.151 4.151 11 C -0.128 4.128 12 C -0.141 4.141 13 N -0.622 5.622 14 C 0.113 3.887 15 C 0.541 3.459 16 O -0.625 6.625 17 C -0.563 4.563 18 H 0.087 0.913 19 C 0.032 3.968 20 N -0.815 5.815 21 Si 0.995 3.005 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.252 1.252 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.138 0.862 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 -8.634 15.089 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.412 6.412 5 C 0.046 3.954 6 H 0.139 0.861 7 C -0.002 4.002 8 O -0.303 6.303 9 C -0.012 4.012 10 C -0.189 4.189 11 C -0.165 4.165 12 C -0.178 4.178 13 N -0.359 5.359 14 C -0.030 4.030 15 C 0.348 3.652 16 O -0.512 6.512 17 C -0.599 4.599 18 H 0.105 0.895 19 C -0.183 4.183 20 N -0.444 5.444 21 Si 0.815 3.185 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.176 1.176 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.156 0.844 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.311 -8.638 14.489 18.385 hybrid contribution 0.145 0.654 -0.512 0.843 sum -7.166 -7.984 13.977 17.620 Atomic orbital electron populations 1.23522 0.74887 1.05716 1.02145 1.86479 1.24979 1.32186 1.83864 1.24252 0.92133 0.81637 0.71135 1.90599 1.67278 1.37326 1.46016 1.20469 0.86755 0.87179 1.00992 0.86117 1.22753 0.96903 0.97283 0.83294 1.87945 1.66085 1.62183 1.14131 1.24095 0.98157 0.96234 0.82710 1.23449 0.99135 1.00108 0.96218 1.22662 1.01576 0.96505 0.95746 1.23221 1.02347 0.97799 0.94480 1.47624 1.48831 1.07396 1.32013 1.21553 0.97387 0.93411 0.90631 1.18688 0.77507 0.89698 0.79264 1.90532 1.60433 1.59545 1.40693 1.21436 1.24119 0.93259 1.21072 0.89520 1.26948 0.94864 1.04035 0.92497 1.70164 1.22492 1.38309 1.13473 0.85038 0.79210 0.75665 0.78625 1.18319 1.19558 1.17582 0.91987 0.92802 0.84405 0.89116 0.92196 0.88600 0.90540 0.90153 0.88503 0.90017 0.90587 0.90381 0.95607 0.89393 0.92272 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -11.27 10.49 -51.43 -0.54 -11.81 16 3 C 0.47 18.26 6.63 71.24 0.47 18.73 16 4 O -0.52 -23.22 14.25 21.95 0.31 -22.91 16 5 C 0.15 6.36 3.07 44.24 0.14 6.50 16 6 H 0.12 5.45 6.92 -2.39 -0.02 5.43 16 7 C 0.08 2.44 5.51 71.98 0.40 2.83 16 8 O -0.38 -11.75 6.97 -148.98 -1.04 -12.78 16 9 C 0.05 1.03 4.29 31.12 0.13 1.16 16 10 C -0.15 -2.78 7.93 31.18 0.25 -2.53 16 11 C -0.13 -1.94 8.09 31.18 0.25 -1.68 16 12 C -0.14 -2.85 7.91 31.12 0.25 -2.60 16 13 N -0.62 -30.48 2.59 -831.90 -2.16 -32.64 16 14 C 0.11 4.89 8.27 127.77 1.06 5.94 16 15 C 0.54 32.24 7.61 86.36 0.66 32.90 16 16 O -0.62 -41.54 14.38 -4.31 -0.06 -41.60 16 17 C -0.56 -32.77 8.67 24.83 0.22 -32.55 16 18 H 0.09 4.67 6.23 -2.91 -0.02 4.65 16 19 C 0.03 1.82 5.50 85.31 0.47 2.29 16 20 N -0.82 -49.68 11.85 21.83 0.26 -49.42 16 21 Si 1.00 41.45 29.56 68.60 2.03 43.48 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 25 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 26 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.14 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.10 1.97 7.88 -2.38 -0.02 1.95 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.03 1.16 7.36 -2.39 -0.02 1.15 16 38 H 0.09 3.43 5.21 -2.39 -0.01 3.42 16 39 H 0.06 2.53 6.50 -2.39 -0.02 2.51 16 40 H 0.28 15.17 8.29 -92.71 -0.77 14.40 16 Total: -1.00 -78.23 333.38 5.32 -72.91 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 1.04 Total: 21.89 kcal Atomic # 6 Polarization: 27.40 SS G_CDS: 5.48 Total: 32.87 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.90 Total: -82.06 kcal Atomic # 8 Polarization: -87.77 SS G_CDS: -1.33 Total: -89.10 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -78.23 5.32 -72.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466048456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.836 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds