Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34238 * 116.99764 * 2 1 4 4 O 1.20828 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99926 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47253 * 300.00572 * 5 3 2 7 7 C 1.53006 * 109.46908 * 60.00619 * 5 3 2 8 8 O 1.42895 * 109.47209 * 54.99833 * 7 5 3 9 9 C 1.42905 * 113.99769 * 179.97438 * 8 7 5 10 10 C 1.53780 * 113.61500 * 249.13352 * 9 8 7 11 11 C 1.53959 * 87.01891 * 220.05108 * 10 9 8 12 12 C 1.53774 * 87.11228 * 25.36517 * 11 10 9 13 13 N 1.46499 * 109.46993 * 180.02562 * 5 3 2 14 14 C 1.46499 * 120.00225 * 300.00069 * 13 5 3 15 15 C 1.34780 * 119.99546 * 120.00631 * 13 5 3 16 16 O 1.21684 * 119.99943 * 359.97438 * 15 13 5 17 17 C 1.46377 * 119.99627 * 180.02562 * 15 13 5 18 18 H 1.08003 * 120.00016 * 359.97438 * 17 15 13 19 19 C 1.40041 * 119.99760 * 179.97438 * 17 15 13 20 20 N 1.30670 * 120.00203 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99891 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47525 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46993 * 120.00278 * 21 19 17 24 24 H 1.48508 * 109.47190 * 240.00044 * 21 19 17 25 25 H 1.09000 * 109.46894 * 59.99691 * 1 2 3 26 26 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47215 * 299.99790 * 1 2 3 28 28 H 1.09002 * 109.47248 * 175.00315 * 7 5 3 29 29 H 1.09003 * 109.46813 * 294.99487 * 7 5 3 30 30 H 1.08999 * 112.84817 * 20.33820 * 9 8 7 31 31 H 1.09000 * 113.61630 * 334.57093 * 10 9 8 32 32 H 1.09000 * 113.61200 * 105.47657 * 10 9 8 33 33 H 1.08996 * 113.53640 * 270.80993 * 11 10 9 34 34 H 1.08997 * 113.74025 * 139.94625 * 11 10 9 35 35 H 1.09004 * 113.61805 * 220.08917 * 12 11 10 36 36 H 1.09000 * 113.69500 * 89.19441 * 12 11 10 37 37 H 1.09002 * 109.47391 * 270.00005 * 14 13 5 38 38 H 1.09001 * 109.46813 * 150.00061 * 14 13 5 39 39 H 1.09004 * 109.47041 * 30.00189 * 14 13 5 40 40 H 0.97006 * 120.00348 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1138 0.5813 -1.2484 8 8 3.5137 1.1529 -2.4125 9 6 3.9594 0.5733 -3.6403 10 6 4.8226 1.5201 -4.4908 11 6 4.0761 0.9675 -5.7188 12 6 2.9145 0.6374 -4.7668 13 7 3.9816 2.6799 0.0011 14 6 3.5813 3.5625 -1.0976 15 6 4.7320 3.1603 1.0123 16 8 5.0642 2.4273 1.9250 17 6 5.1465 4.5642 1.0131 18 1 4.8514 5.2149 0.2032 19 6 5.9258 5.0635 2.0641 20 7 6.2834 4.2762 3.0437 21 14 6.4554 6.8549 2.0648 22 1 5.9248 7.5285 0.8524 23 1 5.9236 7.5278 3.2771 24 1 7.9384 6.9327 2.0658 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 5.1947 0.7149 -1.2940 29 1 3.8809 -0.4827 -1.2047 30 1 4.3976 -0.4158 -3.5070 31 1 4.6295 2.5759 -4.3011 32 1 5.8843 1.2737 -4.4769 33 1 4.5474 0.0866 -6.1546 34 1 3.8300 1.7268 -6.4610 35 1 2.4378 -0.3205 -4.9753 36 1 2.1978 1.4505 -4.6518 37 1 4.3357 3.5292 -1.8837 38 1 3.4870 4.5834 -0.7275 39 1 2.6235 3.2315 -1.4990 40 1 6.8235 4.6220 3.7715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466048457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -134.874715 kcal Electronic energy + Delta-G solvation = -23895.815392 eV Core-core repulsion = 20291.436341 eV Total energy + Delta-G solvation = -3604.379051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22659 -39.11332 -37.76389 -36.00457 -35.87462 -33.66870 -32.46776 -30.38444 -27.41248 -26.15844 -25.72621 -25.44745 -24.45321 -23.45779 -20.93095 -19.66484 -18.98864 -17.64733 -16.73430 -16.46897 -16.21566 -16.02801 -15.55490 -15.40020 -14.94172 -14.36444 -14.13851 -13.71673 -13.59917 -13.09522 -12.63571 -12.44611 -12.31575 -12.25945 -11.87903 -11.73313 -11.62135 -11.44528 -11.24502 -11.13343 -10.98965 -10.72827 -10.71087 -10.40736 -10.39354 -10.24651 -10.11399 -9.89660 -9.23597 -8.87748 -7.68023 -7.32457 -6.22945 -4.66638 2.73797 3.01733 3.13743 3.21861 3.26809 3.82460 4.07586 4.45256 4.52889 4.58266 4.62374 4.83545 4.87121 5.14114 5.26395 5.28942 5.34264 5.38891 5.59879 5.62296 5.64311 5.75148 5.78513 5.80857 5.91556 5.94458 5.99435 6.15931 6.28163 6.39553 6.67963 6.72482 6.89420 7.40911 7.44853 7.52185 8.03509 8.26352 8.33807 9.00178 9.33650 10.50655 10.70296 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.005583 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.929159 B = 5014.454072 C = 6194.032578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.366 6.366 3 C 0.457 3.543 4 O -0.494 6.494 5 C 0.163 3.837 6 H 0.141 0.859 7 C 0.062 3.938 8 O -0.366 6.366 9 C 0.063 3.937 10 C -0.156 4.156 11 C -0.142 4.142 12 C -0.136 4.136 13 N -0.619 5.619 14 C 0.115 3.885 15 C 0.556 3.444 16 O -0.580 6.580 17 C -0.533 4.533 18 H 0.076 0.924 19 C 0.086 3.914 20 N -0.766 5.766 21 Si 0.909 3.091 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 -8.279 -13.529 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.298 3.702 4 O -0.379 6.379 5 C 0.055 3.945 6 H 0.158 0.842 7 C -0.016 4.016 8 O -0.284 6.284 9 C 0.004 3.996 10 C -0.194 4.194 11 C -0.179 4.179 12 C -0.173 4.173 13 N -0.357 5.357 14 C -0.028 4.028 15 C 0.364 3.636 16 O -0.463 6.463 17 C -0.569 4.569 18 H 0.094 0.906 19 C -0.134 4.134 20 N -0.395 5.395 21 Si 0.733 3.267 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.937 -8.220 -12.831 16.354 hybrid contribution 0.125 0.743 -0.033 0.754 sum -5.812 -7.477 -12.864 15.974 Atomic orbital electron populations 1.23122 0.77539 1.02834 1.02180 1.86519 1.22604 1.34439 1.84692 1.24679 0.92689 0.81114 0.71718 1.90603 1.66751 1.36253 1.44330 1.20285 0.85670 0.89067 0.99477 0.84164 1.22932 0.98033 0.96120 0.84547 1.88046 1.66401 1.60876 1.13118 1.23672 0.95921 0.96226 0.83734 1.23505 0.99167 1.01236 0.95480 1.22676 0.97594 1.01158 0.96521 1.23174 0.97190 1.02321 0.94651 1.47841 1.55675 1.06145 1.26000 1.21380 0.98317 0.94466 0.88671 1.18393 0.76906 0.89048 0.79298 1.90584 1.59525 1.59816 1.36373 1.21005 1.33954 0.93451 1.08508 0.90604 1.25756 0.94240 0.98974 0.94392 1.70029 1.26757 1.35509 1.07159 0.86292 0.78630 0.82753 0.78997 1.18633 1.20133 1.20119 0.92334 0.88754 0.92303 0.91449 0.92072 0.89873 0.88983 0.91456 0.90319 0.90992 0.91420 0.89290 0.95018 0.91697 0.92588 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.54 16 2 O -0.37 -6.04 10.49 -39.28 -0.41 -6.45 16 3 C 0.46 9.03 6.51 36.00 0.23 9.27 16 4 O -0.49 -10.99 14.26 -18.75 -0.27 -11.26 16 5 C 0.16 3.32 3.08 -69.08 -0.21 3.10 16 6 H 0.14 3.02 6.89 -51.93 -0.36 2.66 16 7 C 0.06 1.00 5.47 37.16 0.20 1.20 16 8 O -0.37 -5.76 7.57 -35.23 -0.27 -6.02 16 9 C 0.06 0.77 4.30 -25.92 -0.11 0.65 16 10 C -0.16 -1.78 7.93 -25.83 -0.20 -1.99 16 11 C -0.14 -1.31 8.09 -25.83 -0.21 -1.52 16 12 C -0.14 -1.43 7.91 -25.92 -0.21 -1.63 16 13 N -0.62 -14.69 2.54 -176.92 -0.45 -15.14 16 14 C 0.12 2.44 7.99 59.85 0.48 2.92 16 15 C 0.56 15.97 7.61 -12.98 -0.10 15.87 16 16 O -0.58 -18.44 14.34 5.20 0.07 -18.37 16 17 C -0.53 -15.15 8.74 -35.63 -0.31 -15.46 16 18 H 0.08 2.01 6.00 -52.48 -0.31 1.69 16 19 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 20 N -0.77 -22.80 11.83 55.55 0.66 -22.14 16 21 Si 0.91 20.23 29.56 -169.99 -5.02 15.21 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.89 7.88 -51.93 -0.41 0.49 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.62 7.98 -51.93 -0.41 0.21 16 38 H 0.06 1.43 6.09 -51.93 -0.32 1.11 16 39 H 0.06 1.15 5.72 -51.93 -0.30 0.86 16 40 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -35.01 333.97 -6.01 -41.03 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.89 Total: 1.86 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 0.53 Total: 16.26 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.21 Total: -37.28 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.87 Total: -42.10 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.01 -6.01 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466048457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.847 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds