Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99934 * 2 1 4 4 C 1.50706 * 109.47103 * 180.02562 * 3 2 1 5 5 N 1.31791 * 119.08282 * 89.99677 * 4 3 2 6 6 C 1.32551 * 121.01406 * 179.97438 * 5 4 3 7 7 C 1.38133 * 119.19031 * 359.97438 * 6 5 4 8 8 C 1.39612 * 118.33984 * 0.02562 * 7 6 5 9 9 N 1.38642 * 120.53905 * 179.97438 * 8 7 6 10 10 C 1.39801 * 119.99758 * 7.87056 * 9 8 7 11 11 C 1.39325 * 119.95370 * 218.84654 * 10 9 8 12 12 C 1.38482 * 120.42704 * 179.69948 * 11 10 9 13 13 C 1.37686 * 120.32429 * 0.25475 * 12 11 10 14 14 C 1.40747 * 119.89181 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.20851 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00409 * 35.43563 * 15 14 13 17 17 C 1.39934 * 120.00030 * 215.43875 * 15 14 13 18 18 N 1.30835 * 119.99890 * 7.34472 * 17 15 14 19 19 Si 1.86793 * 119.99947 * 187.34198 * 17 15 14 20 20 H 1.48504 * 109.47164 * 90.00390 * 19 17 15 21 21 H 1.48506 * 109.47234 * 210.00217 * 19 17 15 22 22 H 1.48499 * 109.47306 * 330.00324 * 19 17 15 23 23 C 1.38278 * 119.95070 * 39.09957 * 10 9 8 24 24 N 1.31738 * 119.08300 * 270.23301 * 4 3 2 25 25 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47027 * 299.99940 * 1 2 3 27 27 H 1.08994 * 109.47020 * 59.99848 * 1 2 3 28 28 H 1.08993 * 109.47393 * 60.00264 * 3 2 1 29 29 H 1.09002 * 109.47176 * 299.99555 * 3 2 1 30 30 H 1.07997 * 120.40594 * 180.02562 * 6 5 4 31 31 H 1.08002 * 120.82856 * 179.97438 * 7 6 5 32 32 H 0.96989 * 120.00614 * 187.87195 * 9 8 7 33 33 H 1.08007 * 119.78516 * 359.97363 * 11 10 9 34 34 H 1.08000 * 119.83327 * 180.27114 * 12 11 10 35 35 H 1.07998 * 120.05629 * 179.97438 * 13 12 11 36 36 H 0.96993 * 119.99655 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.16408 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.1507 1.1360 -1.1526 6 6 5.4713 1.0319 -1.1979 7 6 6.1836 0.9765 -0.0157 8 6 5.4769 1.0323 1.1871 9 7 6.1459 0.9798 2.4003 10 6 7.5424 1.0360 2.4315 11 6 8.2505 0.2462 3.3347 12 6 9.6342 0.2896 3.3698 13 6 10.3256 1.1185 2.5150 14 6 9.6237 1.9266 1.6011 15 6 10.3269 2.7808 0.7205 16 1 11.2777 2.4712 0.3123 17 6 9.7910 4.0272 0.3780 18 7 8.7147 4.4642 0.9799 19 14 10.6124 5.0671 -0.9385 20 1 10.0354 4.7324 -2.2653 21 1 10.3834 6.5053 -0.6477 22 1 12.0714 4.7905 -0.9492 23 6 8.2187 1.8794 1.5693 24 7 4.1510 1.1310 1.1504 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6887 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 5.9843 0.9918 -2.1474 31 1 7.2603 0.8913 -0.0216 32 1 5.6451 0.9039 3.2274 33 1 7.7169 -0.4075 4.0090 34 1 10.1736 -0.3301 4.0708 35 1 11.4046 1.1492 2.5463 36 1 8.3435 5.3284 0.7428 37 1 7.6708 2.4955 0.8718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559192105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = 16.383976 kcal Electronic energy + Delta-G solvation = -21458.494158 eV Core-core repulsion = 18200.275847 eV Total energy + Delta-G solvation = -3258.218311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.14261 -39.95728 -38.74349 -37.11112 -35.36189 -34.28588 -32.76153 -31.44662 -29.90744 -29.04150 -27.23511 -26.73380 -25.04927 -23.81141 -22.82268 -21.94650 -19.68518 -18.97256 -18.38239 -17.57660 -17.29417 -16.91421 -16.60041 -16.35930 -16.26581 -16.01064 -15.75162 -15.11827 -14.79373 -14.63494 -14.21335 -13.85265 -13.51892 -13.25110 -13.13787 -12.84327 -12.78731 -12.40344 -12.32666 -12.18594 -11.99907 -11.54528 -11.49283 -11.18895 -11.01662 -10.72139 -10.34531 -10.02211 -9.25609 -8.61641 -8.49628 -6.41056 -0.09751 0.15546 0.95951 1.06486 1.40146 1.48897 1.52782 1.90182 2.22579 2.45903 2.74750 2.93705 3.32033 3.47443 3.63699 3.72197 4.13117 4.31516 4.33350 4.44203 4.56050 4.57722 4.59351 4.61264 4.69657 4.85913 4.87662 5.04217 5.13675 5.18255 5.33119 5.46094 5.74993 5.81724 5.94053 6.07774 6.11279 6.19103 6.35560 6.53217 6.76259 6.95261 6.96748 7.17969 8.39510 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.004704 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.319684 B = 5950.550522 C = 7145.205546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.142 3.858 4 C 0.335 3.665 5 N -0.555 5.555 6 C 0.168 3.832 7 C -0.282 4.282 8 C 0.424 3.576 9 N -0.640 5.640 10 C 0.150 3.850 11 C -0.243 4.243 12 C -0.077 4.077 13 C -0.235 4.235 14 C 0.096 3.904 15 C -0.499 4.499 16 H 0.079 0.921 17 C 0.036 3.964 18 N -0.840 5.840 19 Si 0.977 3.023 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.186 4.186 24 N -0.575 5.575 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.196 0.804 31 H 0.148 0.852 32 H 0.415 0.585 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.281 0.719 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -4.216 -2.117 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.064 3.936 4 C 0.064 3.936 5 N -0.275 5.275 6 C 0.007 3.993 7 C -0.309 4.309 8 C 0.181 3.819 9 N -0.265 5.265 10 C 0.056 3.944 11 C -0.264 4.264 12 C -0.096 4.096 13 C -0.255 4.255 14 C 0.093 3.907 15 C -0.530 4.530 16 H 0.097 0.903 17 C -0.176 4.176 18 N -0.467 5.467 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.180 1.180 23 C -0.208 4.208 24 N -0.300 5.300 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.213 0.787 31 H 0.166 0.834 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.186 -4.119 -2.128 12.109 hybrid contribution 1.065 0.827 0.083 1.350 sum -10.121 -3.292 -2.045 10.838 Atomic orbital electron populations 1.23002 0.78085 1.04198 1.01548 1.87883 1.22537 1.26839 1.95758 1.20988 0.83234 0.85991 1.03435 1.22962 0.97540 0.90240 0.82833 1.68230 1.10370 1.19376 1.29559 1.23361 0.88955 0.88121 0.98823 1.22806 1.03778 1.11019 0.93341 1.18662 0.88279 0.87630 0.87307 1.41778 1.04260 1.74987 1.05453 1.17681 0.80409 0.96952 0.99330 1.20550 0.94311 1.05554 1.05985 1.20778 0.93303 0.97575 0.97907 1.21402 0.98946 1.04755 1.00350 1.17781 0.91647 0.90513 0.90715 1.19748 1.06336 1.01027 1.25898 0.90292 1.26613 0.94730 0.99119 0.97177 1.69853 1.20256 1.19577 1.37039 0.85271 0.79663 0.76931 0.78321 1.18674 1.20018 1.18039 1.21163 0.95011 1.00670 1.03981 1.67661 1.07522 1.22788 1.32047 0.88313 0.92557 0.92238 0.89566 0.88769 0.78677 0.83423 0.74678 0.85895 0.84926 0.87668 0.90833 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.69 16 2 O -0.41 -11.13 10.69 -148.98 -1.59 -12.72 16 3 C 0.14 3.75 6.37 71.24 0.45 4.21 16 4 C 0.33 11.74 7.27 138.77 1.01 12.75 16 5 N -0.56 -19.60 10.33 -188.10 -1.94 -21.55 16 6 C 0.17 5.81 11.29 84.56 0.95 6.77 16 7 C -0.28 -11.20 8.03 22.58 0.18 -11.02 16 8 C 0.42 17.11 7.47 133.12 0.99 18.11 16 9 N -0.64 -25.19 5.47 -185.17 -1.01 -26.20 16 10 C 0.15 6.54 5.97 38.14 0.23 6.77 16 11 C -0.24 -9.62 9.97 22.59 0.23 -9.39 16 12 C -0.08 -3.05 10.02 22.20 0.22 -2.83 16 13 C -0.23 -10.66 9.79 22.75 0.22 -10.43 16 14 C 0.10 4.90 5.47 -21.31 -0.12 4.78 16 15 C -0.50 -25.73 9.03 23.46 0.21 -25.52 16 16 H 0.08 3.91 7.86 -2.91 -0.02 3.88 16 17 C 0.04 1.80 5.28 85.25 0.45 2.25 16 18 N -0.84 -43.92 11.14 21.82 0.24 -43.68 16 19 Si 0.98 37.92 29.57 68.60 2.03 39.95 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.19 -9.20 5.92 22.86 0.14 -9.06 16 24 N -0.57 -21.95 10.37 -185.36 -1.92 -23.87 16 25 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.20 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.15 6.32 5.35 -2.91 -0.02 6.31 16 32 H 0.42 14.41 8.95 -92.72 -0.83 13.59 16 33 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 37 H 0.11 5.71 4.96 -2.91 -0.01 5.69 16 Total: -1.00 -61.91 320.12 2.50 -59.41 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.28 Total: 39.58 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 6.42 Total: -10.91 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -4.64 Total: -115.31 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -1.59 Total: -12.72 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -61.91 2.50 -59.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559192105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.793 kcal (2) G-P(sol) polarization free energy of solvation -61.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds