Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00089 * 2 1 4 4 N 1.46504 * 109.47023 * 124.99922 * 3 2 1 5 5 C 1.36941 * 119.99834 * 270.00159 * 4 3 2 6 6 H 1.07998 * 119.99648 * 323.84528 * 5 4 3 7 7 C 1.38808 * 120.00313 * 143.84399 * 5 4 3 8 8 N 1.31626 * 120.00034 * 338.41058 * 7 5 4 9 9 Si 1.86800 * 120.00389 * 158.40460 * 7 5 4 10 10 H 1.48495 * 109.46738 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46940 * 120.00118 * 9 7 5 12 12 H 1.48495 * 109.47162 * 240.00031 * 9 7 5 13 13 C 1.46493 * 120.00113 * 89.99844 * 4 3 2 14 14 C 1.50698 * 109.47097 * 83.96269 * 13 4 3 15 15 C 1.38338 * 119.93868 * 264.82719 * 14 13 4 16 16 C 1.38294 * 120.23683 * 179.97438 * 15 14 13 17 17 C 1.38043 * 120.11838 * 359.97438 * 16 15 14 18 18 C 1.39283 * 119.88086 * 0.02562 * 17 16 15 19 19 C 1.48462 * 120.11756 * 180.02562 * 18 17 16 20 20 N 1.34048 * 126.67277 * 179.68881 * 19 18 17 21 21 N 1.28985 * 107.26851 * 179.83350 * 20 19 18 22 22 N 1.28734 * 108.94178 * 0.42965 * 21 20 19 23 23 H 0.96998 * 125.34587 * 179.74690 * 22 21 20 24 24 N 1.28876 * 109.31945 * 359.72647 * 22 21 20 25 25 C 1.38000 * 119.94538 * 84.80380 * 14 13 4 26 26 H 1.08008 * 119.99879 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00348 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99659 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46981 * 5.00101 * 3 2 1 30 30 H 1.08996 * 109.47077 * 244.99784 * 3 2 1 31 31 H 0.96993 * 120.00433 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47089 * 323.95724 * 13 4 3 33 33 H 1.09005 * 109.47289 * 203.95949 * 13 4 3 34 34 H 1.08008 * 119.88184 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.93800 * 180.02562 * 16 15 14 36 36 H 1.07992 * 120.06353 * 180.27636 * 17 16 15 37 37 H 1.08007 * 120.05697 * 0.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5872 1.8301 2.3405 6 1 1.9125 2.6725 2.3780 7 6 3.0422 1.2524 3.5178 8 7 3.4945 0.0163 3.5124 9 14 3.0128 2.2291 5.1098 10 1 2.4617 3.5832 4.8495 11 1 2.1588 1.5302 6.1035 12 1 4.3938 2.3499 5.6420 13 6 4.3589 0.8256 0.9695 14 6 5.2300 1.9077 0.3854 15 6 5.4436 1.9599 -0.9804 16 6 6.2415 2.9506 -1.5231 17 6 6.8287 3.8935 -0.7036 18 6 6.6169 3.8456 0.6722 19 6 7.2455 4.8573 1.5584 20 7 7.1267 4.9386 2.8912 21 7 7.8270 5.9507 3.2770 22 7 8.3651 6.5037 2.2466 23 1 8.9376 7.2865 2.2647 24 7 8.0243 5.8538 1.1872 25 6 5.8127 2.8450 1.2138 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9313 31 1 3.8121 -0.3876 4.3350 32 1 4.3503 -0.0349 0.3004 33 1 4.7531 0.5265 1.9408 34 1 4.9857 1.2243 -1.6252 35 1 6.4047 2.9870 -2.5900 36 1 7.4480 4.6694 -1.1287 37 1 5.6453 2.8033 2.2800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588628460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = 191.582618 kcal Electronic energy + Delta-G solvation = -21745.870669 eV Core-core repulsion = 18527.542292 eV Total energy + Delta-G solvation = -3218.328377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.27795 -38.86303 -36.06893 -34.23424 -33.45752 -32.92020 -31.45801 -30.26624 -29.91111 -25.81452 -25.52230 -24.42821 -24.16900 -21.94318 -21.40321 -20.20800 -19.02777 -18.77427 -16.97854 -16.89205 -16.09867 -15.23991 -14.94524 -14.56892 -14.11119 -13.91138 -13.73808 -13.23458 -13.19622 -12.88671 -12.40337 -12.24637 -12.15605 -11.31711 -11.21144 -11.15795 -11.00507 -10.85847 -10.80372 -10.73917 -10.61203 -10.33264 -10.17476 -9.98621 -9.90547 -8.58160 -8.46286 -8.28521 -8.12715 -6.66236 -5.84083 -3.35776 1.00282 1.43746 1.92055 2.34991 2.68018 3.17568 3.41550 3.51460 3.54476 3.92870 4.29855 4.42151 4.53394 5.30262 5.34516 5.41079 5.46901 5.62497 5.68514 5.76291 5.88602 5.94281 6.07740 6.09526 6.29245 6.37899 6.46224 6.54489 6.57139 6.67648 6.83808 6.86907 7.00099 7.30889 7.41836 7.45308 7.60556 7.67718 7.82454 8.32088 8.47835 9.14195 9.75909 10.32936 11.18650 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.006092 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.529608 B = 4595.298647 C = 6105.377355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.132 4.132 3 C 0.165 3.835 4 N -0.569 5.569 5 C -0.255 4.255 6 H 0.062 0.938 7 C 0.016 3.984 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.176 3.824 14 C -0.077 4.077 15 C -0.100 4.100 16 C -0.131 4.131 17 C -0.100 4.100 18 C -0.034 4.034 19 C 0.234 3.766 20 N -0.261 5.261 21 N -0.056 5.056 22 N -0.236 5.236 23 H 0.471 0.529 24 N -0.305 5.305 25 C -0.050 4.050 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.256 0.744 32 H 0.036 0.964 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 7.750 -8.160 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.152 4.152 3 C 0.040 3.960 4 N -0.287 5.287 5 C -0.385 4.385 6 H 0.080 0.920 7 C -0.184 4.184 8 N -0.525 5.525 9 Si 0.719 3.281 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.050 3.950 14 C -0.080 4.080 15 C -0.120 4.120 16 C -0.149 4.149 17 C -0.121 4.121 18 C -0.038 4.038 19 C -0.046 4.046 20 N -0.134 5.134 21 N -0.051 5.051 22 N -0.081 5.081 23 H 0.325 0.675 24 N -0.156 5.156 25 C -0.071 4.071 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.358 7.940 -7.397 13.697 hybrid contribution 0.244 0.784 0.580 1.005 sum 8.602 8.725 -6.817 14.021 Atomic orbital electron populations 1.23469 0.96119 1.00172 1.06610 1.23849 0.96001 1.00626 0.94767 1.20174 0.92210 0.92708 0.90934 1.43774 1.04810 1.72370 1.07774 1.19077 1.27947 1.09048 0.82426 0.92034 1.25114 1.00868 0.94599 0.97862 1.70002 1.44567 1.10870 1.27069 0.86420 0.77933 0.80080 0.83637 1.19984 1.21731 1.20741 1.20025 0.83764 0.89548 1.01619 1.21268 0.95051 0.98826 0.92892 1.21280 0.97574 0.98026 0.95142 1.20919 0.99094 0.95781 0.99120 1.20879 1.00298 0.99237 0.91651 1.17300 1.01256 0.94234 0.90974 1.23892 0.96083 0.94794 0.89810 1.76218 1.15881 1.10869 1.10423 1.78922 1.06922 1.04565 1.14737 1.47698 1.34623 1.24303 1.01506 0.67539 1.74893 1.18243 1.08814 1.13682 1.21173 0.92868 0.91776 1.01269 0.89571 0.90200 0.88663 0.93241 0.93690 0.93430 0.94559 0.87538 0.86355 0.86285 0.86102 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.09 14.32 29.01 0.42 -3.68 16 2 C -0.13 -2.61 9.85 -36.03 -0.35 -2.97 16 3 C 0.17 3.39 6.12 -5.19 -0.03 3.36 16 4 N -0.57 -13.46 2.41 -175.99 -0.42 -13.88 16 5 C -0.26 -6.77 9.47 -15.06 -0.14 -6.92 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 7 C 0.02 0.44 4.90 -17.43 -0.09 0.35 16 8 N -0.88 -24.58 11.47 55.49 0.64 -23.94 16 9 Si 0.89 21.76 29.61 -169.99 -5.03 16.73 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.18 3.89 5.35 -5.20 -0.03 3.86 16 14 C -0.08 -1.49 5.45 -104.67 -0.57 -2.06 16 15 C -0.10 -1.61 9.57 -39.52 -0.38 -1.99 16 16 C -0.13 -1.86 10.03 -39.63 -0.40 -2.25 16 17 C -0.10 -1.50 9.70 -39.26 -0.38 -1.88 16 18 C -0.03 -0.60 5.88 -104.89 -0.62 -1.22 16 19 C 0.23 4.00 7.94 -156.30 -1.24 2.76 16 20 N -0.26 -4.80 12.23 32.16 0.39 -4.41 16 21 N -0.06 -0.84 13.47 60.35 0.81 -0.03 16 22 N -0.24 -2.69 7.90 60.35 0.48 -2.21 16 23 H 0.47 2.73 8.96 -340.37 -3.05 -0.32 16 24 N -0.30 -4.30 12.08 32.17 0.39 -3.91 16 25 C -0.05 -0.99 9.37 -39.27 -0.37 -1.36 16 26 H 0.09 1.49 7.84 -52.48 -0.41 1.08 16 27 H 0.08 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.05 1.02 7.69 -51.93 -0.40 0.62 16 30 H 0.04 0.83 7.97 -51.93 -0.41 0.41 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16 33 H 0.11 2.69 5.48 -51.93 -0.28 2.40 16 34 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.57 7.88 -52.49 -0.41 1.16 16 37 H 0.13 2.99 7.89 -52.48 -0.41 2.57 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -30.57 328.64 -9.02 -39.59 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.05 Total: 1.09 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -4.18 Total: -13.98 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 2.28 Total: -48.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.57 -9.02 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588628460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.178 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds