Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00089 * 2 1 4 4 N 1.46504 * 109.47023 * 124.99922 * 3 2 1 5 5 C 1.36941 * 119.99834 * 270.00159 * 4 3 2 6 6 H 1.07998 * 119.99648 * 323.84528 * 5 4 3 7 7 C 1.38808 * 120.00313 * 143.84399 * 5 4 3 8 8 N 1.31626 * 120.00034 * 338.41058 * 7 5 4 9 9 Si 1.86800 * 120.00389 * 158.40460 * 7 5 4 10 10 H 1.48495 * 109.46738 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46940 * 120.00118 * 9 7 5 12 12 H 1.48495 * 109.47162 * 240.00031 * 9 7 5 13 13 C 1.46493 * 120.00113 * 89.99844 * 4 3 2 14 14 C 1.50698 * 109.47097 * 83.96269 * 13 4 3 15 15 C 1.38338 * 119.93868 * 264.82719 * 14 13 4 16 16 C 1.38294 * 120.23683 * 179.97438 * 15 14 13 17 17 C 1.38043 * 120.11838 * 359.97438 * 16 15 14 18 18 C 1.39283 * 119.88086 * 0.02562 * 17 16 15 19 19 C 1.48462 * 120.11756 * 180.02562 * 18 17 16 20 20 N 1.34048 * 126.67277 * 179.68881 * 19 18 17 21 21 N 1.28985 * 107.26851 * 179.83350 * 20 19 18 22 22 N 1.28734 * 108.94178 * 0.42965 * 21 20 19 23 23 H 0.96998 * 125.34587 * 179.74690 * 22 21 20 24 24 N 1.28876 * 109.31945 * 359.72647 * 22 21 20 25 25 C 1.38000 * 119.94538 * 84.80380 * 14 13 4 26 26 H 1.08008 * 119.99879 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.00348 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99659 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46981 * 5.00101 * 3 2 1 30 30 H 1.08996 * 109.47077 * 244.99784 * 3 2 1 31 31 H 0.96993 * 120.00433 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47089 * 323.95724 * 13 4 3 33 33 H 1.09005 * 109.47289 * 203.95949 * 13 4 3 34 34 H 1.08008 * 119.88184 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.93800 * 180.02562 * 16 15 14 36 36 H 1.07992 * 120.06353 * 180.27636 * 17 16 15 37 37 H 1.08007 * 120.05697 * 0.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5872 1.8301 2.3405 6 1 1.9125 2.6725 2.3780 7 6 3.0422 1.2524 3.5178 8 7 3.4945 0.0163 3.5124 9 14 3.0128 2.2291 5.1098 10 1 2.4617 3.5832 4.8495 11 1 2.1588 1.5302 6.1035 12 1 4.3938 2.3499 5.6420 13 6 4.3589 0.8256 0.9695 14 6 5.2300 1.9077 0.3854 15 6 5.4436 1.9599 -0.9804 16 6 6.2415 2.9506 -1.5231 17 6 6.8287 3.8935 -0.7036 18 6 6.6169 3.8456 0.6722 19 6 7.2455 4.8573 1.5584 20 7 7.1267 4.9386 2.8912 21 7 7.8270 5.9507 3.2770 22 7 8.3651 6.5037 2.2466 23 1 8.9376 7.2865 2.2647 24 7 8.0243 5.8538 1.1872 25 6 5.8127 2.8450 1.2138 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9313 31 1 3.8121 -0.3876 4.3350 32 1 4.3503 -0.0349 0.3004 33 1 4.7531 0.5265 1.9408 34 1 4.9857 1.2243 -1.6252 35 1 6.4047 2.9870 -2.5900 36 1 7.4480 4.6694 -1.1287 37 1 5.6453 2.8033 2.2800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588628460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = 173.550124 kcal Electronic energy + Delta-G solvation = -21746.652617 eV Core-core repulsion = 18527.542292 eV Total energy + Delta-G solvation = -3219.110325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.45952 -40.21553 -37.75967 -35.44535 -34.78448 -34.53285 -33.12985 -31.66003 -31.38930 -27.44419 -27.30796 -25.64244 -25.43688 -23.59351 -22.74027 -21.64639 -20.35376 -20.14033 -18.74598 -18.14467 -17.45976 -16.86642 -16.42941 -16.08983 -15.78271 -15.51863 -15.11578 -14.91274 -14.61637 -14.35602 -13.77192 -13.67216 -13.35466 -13.22191 -12.81040 -12.73548 -12.47085 -12.41606 -12.29611 -12.20239 -12.05056 -11.89237 -11.80682 -11.74044 -11.61858 -10.53037 -10.04529 -9.60680 -9.45455 -8.58760 -7.86069 -5.40013 -0.20895 0.20182 0.60916 1.38356 1.41146 1.43884 1.48703 1.53552 1.67523 2.50937 2.70284 2.97899 3.20298 3.28180 3.97155 4.11558 4.16688 4.23524 4.33065 4.38866 4.45327 4.55265 4.62612 4.71271 4.82492 4.90955 5.04075 5.15606 5.24807 5.32740 5.57407 5.58071 5.62997 5.67710 5.74443 5.92920 5.96175 6.14309 6.16006 6.48657 7.12242 7.17282 7.85702 8.36871 9.12793 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.006092 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.529608 B = 4595.298647 C = 6105.377355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.167 3.833 4 N -0.583 5.583 5 C -0.254 4.254 6 H 0.050 0.950 7 C -0.022 4.022 8 N -0.908 5.908 9 Si 0.935 3.065 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.291 1.291 13 C 0.183 3.817 14 C -0.094 4.094 15 C -0.096 4.096 16 C -0.113 4.113 17 C -0.088 4.088 18 C -0.042 4.042 19 C 0.215 3.785 20 N -0.309 5.309 21 N -0.062 5.062 22 N -0.198 5.198 23 H 0.495 0.505 24 N -0.287 5.287 25 C -0.075 4.075 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.251 0.749 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.934 9.269 -10.907 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.176 4.176 3 C 0.042 3.958 4 N -0.302 5.302 5 C -0.384 4.384 6 H 0.067 0.933 7 C -0.220 4.220 8 N -0.552 5.552 9 Si 0.764 3.236 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.217 1.217 13 C 0.058 3.942 14 C -0.097 4.097 15 C -0.116 4.116 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.045 4.045 19 C -0.064 4.064 20 N -0.181 5.181 21 N -0.057 5.057 22 N -0.049 5.049 23 H 0.354 0.646 24 N -0.140 5.140 25 C -0.096 4.096 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.167 0.833 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.116 9.487 -10.150 16.617 hybrid contribution 0.096 0.440 1.314 1.389 sum 9.212 9.927 -8.836 16.170 Atomic orbital electron populations 1.23698 0.95604 1.01487 1.03810 1.23747 0.96686 0.99914 0.97244 1.20221 0.91964 0.92906 0.90713 1.43916 1.06197 1.72436 1.07664 1.19127 1.27101 1.08308 0.83909 0.93272 1.25530 1.01611 0.95181 0.99686 1.70088 1.46204 1.11840 1.27092 0.85722 0.77148 0.79181 0.81571 1.19908 1.21558 1.21739 1.19780 0.83601 0.90843 1.00000 1.20928 0.96051 0.98168 0.94526 1.21477 0.97557 0.98994 0.93543 1.21371 0.96729 0.93790 1.01189 1.21248 0.99612 0.99695 0.90297 1.17404 1.00951 0.93782 0.92379 1.23915 0.97211 0.95765 0.89545 1.76214 1.17698 1.12524 1.11639 1.78850 1.07175 1.04346 1.15320 1.47768 1.32956 1.23891 1.00290 0.64581 1.74832 1.17285 1.07947 1.13941 1.20883 0.95337 0.93882 0.99519 0.88663 0.88408 0.89466 0.93691 0.91374 0.93942 0.93912 0.91359 0.84192 0.81729 0.83291 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.20 14.32 67.78 0.97 -6.23 16 2 C -0.16 -6.06 9.85 25.64 0.25 -5.80 16 3 C 0.17 6.75 6.12 85.63 0.52 7.28 16 4 N -0.58 -28.15 2.41 -710.71 -1.71 -29.86 16 5 C -0.25 -13.91 9.47 84.03 0.80 -13.12 16 6 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 7 C -0.02 -1.24 4.90 84.86 0.42 -0.82 16 8 N -0.91 -52.83 11.47 21.65 0.25 -52.58 16 9 Si 0.93 46.65 29.61 68.60 2.03 48.68 16 10 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 11 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 13 C 0.18 8.36 5.35 85.63 0.46 8.82 16 14 C -0.09 -3.65 5.45 -19.90 -0.11 -3.76 16 15 C -0.10 -2.85 9.57 22.31 0.21 -2.63 16 16 C -0.11 -2.71 10.03 22.24 0.22 -2.49 16 17 C -0.09 -2.35 9.70 22.47 0.22 -2.13 16 18 C -0.04 -1.44 5.88 -20.04 -0.12 -1.56 16 19 C 0.22 7.25 7.94 137.38 1.09 8.35 16 20 N -0.31 -11.57 12.23 -52.18 -0.64 -12.21 16 21 N -0.06 -1.82 13.47 37.02 0.50 -1.33 16 22 N -0.20 -4.08 7.90 37.02 0.29 -3.79 16 23 H 0.49 4.27 8.96 -347.54 -3.12 1.15 16 24 N -0.29 -7.45 12.08 -52.13 -0.63 -8.08 16 25 C -0.07 -3.08 9.37 22.47 0.21 -2.87 16 26 H 0.10 3.12 7.84 -2.91 -0.02 3.09 16 27 H 0.10 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.09 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.04 1.83 7.69 -2.39 -0.02 1.81 16 30 H 0.07 2.39 7.97 -2.39 -0.02 2.37 16 31 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.04 1.82 8.02 -2.39 -0.02 1.80 16 33 H 0.07 3.67 5.48 -2.38 -0.01 3.66 16 34 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.15 3.16 7.88 -2.91 -0.02 3.13 16 37 H 0.09 4.57 7.89 -2.91 -0.02 4.55 16 Total: -1.00 -69.39 328.64 3.22 -66.17 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -2.02 Total: 9.96 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 5.15 Total: -16.97 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -1.94 Total: -107.85 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -69.39 3.22 -66.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588628460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.720 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds