Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 13 13 O 1.21285 * 120.00039 * 120.00069 * 12 2 1 14 14 N 1.34780 * 120.00249 * 299.99993 * 12 2 1 15 15 C 1.46500 * 120.00188 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47023 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.54058 * 60.00454 * 16 15 14 18 18 O 1.20821 * 120.00106 * 119.99846 * 17 16 15 19 19 O 1.34235 * 119.99780 * 299.99333 * 17 16 15 20 20 C 1.53174 * 109.54688 * 299.82505 * 16 15 14 21 21 C 1.53287 * 109.06372 * 297.02945 * 20 16 15 22 22 O 1.42903 * 109.45599 * 302.44576 * 21 20 16 23 23 C 1.42897 * 114.09915 * 61.15894 * 22 21 20 24 24 C 1.53094 * 109.41666 * 298.83629 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99818 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47092 * 300.00165 * 15 14 12 31 31 H 1.09000 * 109.47175 * 60.00123 * 15 14 12 32 32 H 0.96700 * 117.00079 * 180.02562 * 19 17 16 33 33 H 1.09007 * 109.52194 * 57.01949 * 20 16 15 34 34 H 1.08999 * 109.52481 * 177.20703 * 20 16 15 35 35 H 1.08997 * 109.45718 * 182.44736 * 21 20 16 36 36 H 1.09001 * 109.46650 * 62.44639 * 21 20 16 37 37 H 1.09005 * 109.47932 * 178.85729 * 23 22 21 38 38 H 1.09000 * 109.49156 * 58.82641 * 23 22 21 39 39 H 1.08995 * 109.52148 * 297.70605 * 24 23 22 40 40 H 1.08999 * 109.57232 * 177.54628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6508 16 6 1.6852 -0.2190 4.9000 17 6 0.1781 -0.2171 4.9017 18 8 -0.4257 -0.7393 5.8086 19 8 -0.4934 0.3651 3.8957 20 6 2.1995 1.2238 4.9038 21 6 3.7304 1.2094 4.9816 22 8 4.1408 0.4996 6.1520 23 6 3.7271 -0.8678 6.1803 24 6 2.1980 -0.9376 6.1519 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.1488 0.5386 2.5436 30 1 1.8308 -1.9683 3.6507 31 1 3.2846 -0.9412 3.6510 32 1 -1.4590 0.3414 3.9408 33 1 1.8838 1.7254 3.9890 34 1 1.7962 1.7520 5.7678 35 1 4.1012 2.2332 5.0286 36 1 4.1344 0.7166 4.0973 37 1 4.0956 -1.3404 7.0909 38 1 4.1309 -1.3881 5.3118 39 1 1.7947 -0.4529 7.0410 40 1 1.8803 -1.9800 6.1294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = -185.138443 kcal Electronic energy + Delta-G solvation = -24000.909242 eV Core-core repulsion = 20394.350591 eV Total energy + Delta-G solvation = -3606.558650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30212 -39.27341 -38.56533 -36.30787 -35.47111 -33.72775 -32.73083 -31.39308 -30.41004 -27.26930 -25.48995 -25.11144 -23.97461 -22.36447 -22.26957 -19.49971 -19.25740 -18.12123 -17.31376 -16.57327 -16.23225 -16.16379 -15.70215 -15.39422 -15.20294 -14.96466 -14.45939 -14.39633 -13.73486 -13.62000 -13.37446 -12.84861 -12.64884 -12.62459 -12.17123 -11.77566 -11.62191 -11.59373 -11.45620 -11.02843 -11.02364 -10.83803 -10.71177 -10.64564 -10.50699 -10.26044 -9.96041 -9.72432 -8.96930 -8.64008 -8.48489 -8.32886 -6.03138 -4.06168 2.00921 2.77511 3.33572 3.39380 3.45869 3.65548 3.69450 3.75156 4.25338 4.30967 4.46158 4.54636 4.67028 4.87954 4.97919 5.08301 5.30140 5.32340 5.35031 5.44320 5.48531 5.58120 5.66222 5.76114 5.80622 5.91655 6.26462 6.35011 6.64893 6.84874 6.93486 6.95166 7.02503 7.47852 7.71439 7.76983 7.99260 8.15732 8.45142 9.02806 9.22127 9.59425 11.04351 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024350 B = 0.004528 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.600860 B = 6182.156236 C = 6703.464634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.031 3.969 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.548 6.548 14 N -0.743 5.743 15 C 0.127 3.873 16 C -0.062 4.062 17 C 0.493 3.507 18 O -0.515 6.515 19 O -0.505 6.505 20 C -0.144 4.144 21 C 0.059 3.941 22 O -0.380 6.380 23 C 0.058 3.942 24 C -0.132 4.132 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.015 0.985 28 H 0.260 0.740 29 H 0.403 0.597 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 2.390 16.918 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.424 6.424 14 N -0.401 5.401 15 C 0.002 3.998 16 C -0.063 4.063 17 C 0.335 3.665 18 O -0.403 6.403 19 O -0.317 6.317 20 C -0.182 4.182 21 C -0.017 4.017 22 O -0.299 6.299 23 C -0.019 4.019 24 C -0.171 4.171 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.240 0.760 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.272 0.728 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.918 1.733 17.051 17.163 hybrid contribution -1.031 -0.237 -0.945 1.418 sum -0.113 1.497 16.106 16.176 Atomic orbital electron populations 1.21733 0.96496 0.99710 1.01022 1.18853 0.94207 0.96771 0.89197 0.93034 1.21148 1.30942 1.12774 0.89026 0.90836 1.24943 0.95143 0.95059 0.99083 1.69868 1.37150 1.23099 1.23493 0.86463 0.79448 0.79250 0.82113 1.20717 1.21312 1.19768 1.22016 0.78360 0.84255 0.84404 1.90534 1.38087 1.26916 1.86823 1.46432 1.55567 1.33160 1.04924 1.21271 0.99883 0.95973 0.82680 1.20906 0.87659 0.99263 0.98505 1.23182 0.91040 0.73774 0.78490 1.90703 1.70386 1.42656 1.36512 1.84484 1.26944 1.72578 1.47718 1.22302 0.97993 0.93471 1.04406 1.22682 0.92463 0.97987 0.88616 1.87940 1.76865 1.23053 1.42029 1.22691 0.92571 0.83577 1.03076 1.22116 0.97022 1.01988 0.95930 0.95214 0.88956 0.96565 0.92998 0.75953 0.91464 0.90250 0.72773 0.88940 0.90195 0.88003 0.91865 0.88065 0.92163 0.89568 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.87 37.16 0.33 -2.63 16 2 C 0.03 0.75 2.64 -92.93 -0.25 0.50 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.50 -14.03 8.37 -34.44 -0.29 -14.32 16 5 H 0.07 2.18 6.75 -52.49 -0.35 1.83 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.52 11.49 7.15 -10.98 -0.08 11.41 16 13 O -0.55 -13.94 15.46 5.55 0.09 -13.85 16 14 N -0.74 -12.26 4.64 -60.29 -0.28 -12.54 16 15 C 0.13 1.77 4.00 -4.04 -0.02 1.75 16 16 C -0.06 -0.69 0.50 -155.47 -0.08 -0.77 16 17 C 0.49 6.01 6.92 36.01 0.25 6.26 16 18 O -0.51 -7.40 16.73 -18.75 -0.31 -7.71 16 19 O -0.51 -5.34 10.97 -39.27 -0.43 -5.77 16 20 C -0.14 -1.43 4.74 -26.49 -0.13 -1.55 16 21 C 0.06 0.59 6.57 37.31 0.25 0.84 16 22 O -0.38 -4.16 10.77 -35.23 -0.38 -4.54 16 23 C 0.06 0.54 6.57 37.21 0.24 0.78 16 24 C -0.13 -1.33 4.23 -26.59 -0.11 -1.44 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 27 H 0.02 0.29 7.56 -51.93 -0.39 -0.10 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.40 5.97 4.77 -40.82 -0.19 5.78 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.11 5.00 -51.93 -0.26 0.85 16 32 H 0.41 2.78 9.10 45.56 0.41 3.19 16 33 H 0.09 0.92 6.81 -51.93 -0.35 0.56 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.70 6.60 -51.93 -0.34 0.35 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.57 6.60 -51.93 -0.34 0.23 16 39 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -33.30 319.21 -5.52 -38.83 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.65 Total: 6.01 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 0.03 Total: 2.34 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.35 Total: -36.76 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.04 Total: -31.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.30 -5.52 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.311 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds