Wall clock time and date at job start Tue Mar 31 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 C 1.50700 * 109.47195 * 120.00167 * 2 1 3 5 5 H 1.08004 * 120.00169 * 120.00445 * 4 2 1 6 6 C 1.37871 * 120.00202 * 299.99632 * 4 2 1 7 7 N 1.31515 * 120.00165 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00344 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47220 * 60.00040 * 8 6 4 10 10 H 1.48500 * 109.47463 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46891 * 300.00431 * 8 6 4 12 12 C 1.50708 * 109.47157 * 240.00094 * 2 1 3 13 13 O 1.21278 * 119.99944 * 240.00041 * 12 2 1 14 14 N 1.34778 * 119.99438 * 59.99841 * 12 2 1 15 15 C 1.46505 * 119.99424 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47038 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.54009 * 299.99926 * 16 15 14 18 18 O 1.20830 * 119.99594 * 240.00042 * 17 16 15 19 19 O 1.34222 * 120.00024 * 59.72326 * 17 16 15 20 20 C 1.53179 * 109.54647 * 60.17156 * 16 15 14 21 21 C 1.53274 * 109.06498 * 176.85476 * 20 16 15 22 22 O 1.42906 * 109.46405 * 302.44711 * 21 20 16 23 23 C 1.42901 * 114.09480 * 61.15450 * 22 21 20 24 24 C 1.53091 * 109.41878 * 298.84569 * 23 22 21 25 25 H 1.08999 * 109.46928 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47188 * 299.99597 * 1 2 3 27 27 H 1.08995 * 109.47393 * 60.00160 * 1 2 3 28 28 H 0.96998 * 120.00833 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00300 * 359.97438 * 14 12 2 30 30 H 1.08999 * 109.47367 * 59.99744 * 15 14 12 31 31 H 1.09002 * 109.46611 * 299.99704 * 15 14 12 32 32 H 0.96704 * 116.99844 * 179.97438 * 19 17 16 33 33 H 1.09004 * 109.52193 * 296.84670 * 20 16 15 34 34 H 1.09001 * 109.51834 * 57.03147 * 20 16 15 35 35 H 1.08999 * 109.45901 * 182.45538 * 21 20 16 36 36 H 1.08995 * 109.47018 * 62.45173 * 21 20 16 37 37 H 1.09005 * 109.48408 * 178.86183 * 23 22 21 38 38 H 1.08999 * 109.48787 * 58.83750 * 23 22 21 39 39 H 1.09004 * 109.52229 * 297.70703 * 24 23 22 40 40 H 1.08997 * 109.57535 * 177.54498 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8271 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0080 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1945 -0.9408 -3.6508 16 6 1.6851 -0.2191 -4.9000 17 6 0.1781 -0.2171 -4.9016 18 8 -0.4257 -0.7395 -5.8086 19 8 -0.4934 0.3601 -3.8929 20 6 2.1994 1.2238 -4.9038 21 6 1.7488 1.9125 -6.1968 22 8 2.2332 1.1766 -7.3220 23 6 1.7474 -0.1653 -7.3945 24 6 2.1980 -0.9376 -6.1518 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7083 1.1608 3.4844 29 1 1.1487 0.5386 -2.5435 30 1 1.8309 -1.9683 -3.6507 31 1 3.2846 -0.9411 -3.6509 32 1 -1.4591 0.3366 -3.9381 33 1 1.7939 1.7572 -4.0440 34 1 3.2882 1.2225 -4.8525 35 1 2.1480 2.9263 -6.2264 36 1 0.6599 1.9496 -6.2283 37 1 2.1456 -0.6484 -8.2869 38 1 0.6585 -0.1558 -7.4416 39 1 3.2868 -0.9824 -6.1257 40 1 1.7924 -1.9488 -6.1833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:04 Heat of formation + Delta-G solvation = -184.916560 kcal Electronic energy + Delta-G solvation = -23917.696320 eV Core-core repulsion = 20311.147291 eV Total energy + Delta-G solvation = -3606.549029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44910 -38.88920 -38.65055 -36.33659 -35.67432 -33.71781 -32.70600 -31.39014 -30.42617 -27.55435 -25.12037 -24.66325 -23.97268 -22.98029 -21.88191 -19.99392 -19.43197 -18.04953 -16.98082 -16.65486 -16.21710 -16.11889 -15.79863 -15.41398 -15.15830 -14.90308 -14.51759 -14.35982 -13.79514 -13.66856 -13.04011 -12.76956 -12.67328 -12.59462 -12.21506 -12.14486 -11.74167 -11.55001 -11.45010 -11.00465 -10.98027 -10.91868 -10.73436 -10.66601 -10.36369 -10.23890 -9.95928 -9.71577 -8.97226 -8.62325 -8.47788 -8.31663 -6.02259 -4.05327 1.96287 2.76983 3.36624 3.39013 3.44294 3.62364 3.70832 3.76046 4.24437 4.31192 4.43730 4.50984 4.69633 4.91969 4.96084 5.19267 5.25960 5.30950 5.33679 5.41713 5.50152 5.61942 5.72503 5.75434 5.76229 5.87978 6.27720 6.35172 6.65435 6.85529 6.93442 6.94378 7.04404 7.48691 7.68520 7.77419 8.00056 8.16746 8.46539 9.03243 9.23883 9.60151 11.05225 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033359 B = 0.004009 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.160361 B = 6982.280921 C = 7154.359031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.548 6.548 14 N -0.743 5.743 15 C 0.133 3.867 16 C -0.062 4.062 17 C 0.491 3.509 18 O -0.513 6.513 19 O -0.504 6.504 20 C -0.146 4.146 21 C 0.058 3.942 22 O -0.382 6.382 23 C 0.050 3.950 24 C -0.133 4.133 25 H 0.029 0.971 26 H 0.092 0.908 27 H 0.015 0.985 28 H 0.261 0.739 29 H 0.402 0.598 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 2.943 -17.964 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.424 6.424 14 N -0.401 5.401 15 C 0.008 3.992 16 C -0.063 4.063 17 C 0.333 3.667 18 O -0.402 6.402 19 O -0.316 6.316 20 C -0.184 4.184 21 C -0.019 4.019 22 O -0.300 6.300 23 C -0.027 4.027 24 C -0.171 4.171 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.240 0.760 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.272 0.728 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.844 2.279 -18.081 18.243 hybrid contribution -0.875 -0.279 1.001 1.358 sum -1.719 2.000 -17.080 17.282 Atomic orbital electron populations 1.21728 0.96505 0.99697 1.00997 1.18851 0.94202 0.96771 0.89208 0.93042 1.21111 1.30989 1.12804 0.89048 0.90891 1.24939 0.95133 0.95070 0.99069 1.69859 1.37090 1.23104 1.23591 0.86516 0.79283 0.79708 0.81669 1.20203 1.21401 1.20249 1.22003 0.78364 0.84253 0.84424 1.90531 1.38087 1.26946 1.86825 1.46417 1.55558 1.33167 1.04992 1.21154 0.99872 0.95776 0.82380 1.20960 0.87439 0.99281 0.98643 1.23273 0.91207 0.73689 0.78503 1.90663 1.70462 1.42697 1.36349 1.84493 1.26934 1.72756 1.47441 1.22385 1.03584 0.92707 0.99714 1.22660 0.98149 0.95989 0.85111 1.87934 1.71757 1.24654 1.45680 1.22836 1.00245 0.82130 0.97478 1.22110 1.02444 1.00166 0.92415 0.95219 0.88962 0.96588 0.92947 0.76014 0.91529 0.90235 0.72784 0.88977 0.88741 0.87963 0.93583 0.88486 0.91006 0.89069 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.87 37.16 0.33 -2.63 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.13 8.37 -34.44 -0.29 -14.42 16 5 H 0.07 2.18 6.75 -52.48 -0.35 1.82 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 11.61 7.15 -10.98 -0.08 11.53 16 13 O -0.55 -14.10 15.46 5.56 0.09 -14.01 16 14 N -0.74 -12.39 4.68 -60.29 -0.28 -12.67 16 15 C 0.13 1.86 4.56 -4.04 -0.02 1.84 16 16 C -0.06 -0.68 0.51 -155.48 -0.08 -0.76 16 17 C 0.49 5.78 5.58 36.01 0.20 5.98 16 18 O -0.51 -6.89 14.61 -18.75 -0.27 -7.17 16 19 O -0.50 -5.21 10.90 -39.24 -0.43 -5.64 16 20 C -0.15 -1.43 4.68 -26.50 -0.12 -1.56 16 21 C 0.06 0.54 6.62 37.30 0.25 0.79 16 22 O -0.38 -4.18 10.77 -35.23 -0.38 -4.56 16 23 C 0.05 0.49 6.55 37.20 0.24 0.74 16 24 C -0.13 -1.31 4.56 -26.59 -0.12 -1.44 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 27 H 0.02 0.29 7.56 -51.93 -0.39 -0.11 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.40 6.00 4.79 -40.82 -0.20 5.80 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.41 2.68 9.10 45.56 0.41 3.09 16 33 H 0.09 0.90 6.90 -51.93 -0.36 0.54 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.44 7.38 -51.93 -0.38 0.05 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.81 5.82 -51.93 -0.30 0.50 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -33.22 319.84 -5.70 -38.92 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.82 Total: 5.78 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.03 Total: 2.11 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.35 Total: -36.98 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.00 Total: -31.38 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.22 -5.70 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.994 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds