Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 C 1.50700 * 109.47195 * 120.00167 * 2 1 3 5 5 H 1.08004 * 120.00169 * 120.00445 * 4 2 1 6 6 C 1.37871 * 120.00202 * 299.99632 * 4 2 1 7 7 N 1.31515 * 120.00165 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00344 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47220 * 60.00040 * 8 6 4 10 10 H 1.48500 * 109.47463 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46891 * 300.00431 * 8 6 4 12 12 C 1.50708 * 109.47157 * 240.00094 * 2 1 3 13 13 O 1.21278 * 119.99944 * 240.00041 * 12 2 1 14 14 N 1.34778 * 119.99438 * 59.99841 * 12 2 1 15 15 C 1.46505 * 119.99424 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47038 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.54009 * 299.99926 * 16 15 14 18 18 O 1.20830 * 119.99594 * 240.00042 * 17 16 15 19 19 O 1.34222 * 120.00024 * 59.72326 * 17 16 15 20 20 C 1.53179 * 109.54647 * 60.17156 * 16 15 14 21 21 C 1.53274 * 109.06498 * 176.85476 * 20 16 15 22 22 O 1.42906 * 109.46405 * 302.44711 * 21 20 16 23 23 C 1.42901 * 114.09480 * 61.15450 * 22 21 20 24 24 C 1.53091 * 109.41878 * 298.84569 * 23 22 21 25 25 H 1.08999 * 109.46928 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47188 * 299.99597 * 1 2 3 27 27 H 1.08995 * 109.47393 * 60.00160 * 1 2 3 28 28 H 0.96998 * 120.00833 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00300 * 359.97438 * 14 12 2 30 30 H 1.08999 * 109.47367 * 59.99744 * 15 14 12 31 31 H 1.09002 * 109.46611 * 299.99704 * 15 14 12 32 32 H 0.96704 * 116.99844 * 179.97438 * 19 17 16 33 33 H 1.09004 * 109.52193 * 296.84670 * 20 16 15 34 34 H 1.09001 * 109.51834 * 57.03147 * 20 16 15 35 35 H 1.08999 * 109.45901 * 182.45538 * 21 20 16 36 36 H 1.08995 * 109.47018 * 62.45173 * 21 20 16 37 37 H 1.09005 * 109.48408 * 178.86183 * 23 22 21 38 38 H 1.08999 * 109.48787 * 58.83750 * 23 22 21 39 39 H 1.09004 * 109.52229 * 297.70703 * 24 23 22 40 40 H 1.08997 * 109.57535 * 177.54498 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8271 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0080 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1945 -0.9408 -3.6508 16 6 1.6851 -0.2191 -4.9000 17 6 0.1781 -0.2171 -4.9016 18 8 -0.4257 -0.7395 -5.8086 19 8 -0.4934 0.3601 -3.8929 20 6 2.1994 1.2238 -4.9038 21 6 1.7488 1.9125 -6.1968 22 8 2.2332 1.1766 -7.3220 23 6 1.7474 -0.1653 -7.3945 24 6 2.1980 -0.9376 -6.1518 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7083 1.1608 3.4844 29 1 1.1487 0.5386 -2.5435 30 1 1.8309 -1.9683 -3.6507 31 1 3.2846 -0.9411 -3.6509 32 1 -1.4591 0.3366 -3.9381 33 1 1.7939 1.7572 -4.0440 34 1 3.2882 1.2225 -4.8525 35 1 2.1480 2.9263 -6.2264 36 1 0.6599 1.9496 -6.2283 37 1 2.1456 -0.6484 -8.2869 38 1 0.6585 -0.1558 -7.4416 39 1 3.2868 -0.9824 -6.1257 40 1 1.7924 -1.9488 -6.1833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -209.280268 kcal Electronic energy + Delta-G solvation = -23918.752810 eV Core-core repulsion = 20311.147291 eV Total energy + Delta-G solvation = -3607.605518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.37512 -40.41714 -39.63364 -37.26370 -36.82432 -35.73048 -34.07161 -32.34000 -32.14512 -28.66579 -27.15633 -25.73101 -24.88766 -24.19424 -23.22214 -21.10186 -20.82528 -19.05092 -18.37709 -18.01866 -17.64219 -17.13331 -16.80331 -16.68568 -16.62510 -16.11641 -15.86709 -15.70183 -14.94009 -14.81708 -14.49963 -14.41538 -13.77519 -13.60652 -13.38619 -13.29144 -13.09681 -12.94683 -12.69331 -12.62938 -12.55086 -12.31557 -12.17226 -11.99465 -11.81432 -11.78527 -11.20482 -11.01483 -10.60178 -10.53015 -10.28062 -9.97964 -8.12546 -6.22540 1.03520 1.42900 1.43898 1.52443 1.93699 1.95349 2.31603 2.51230 2.90340 3.17090 3.31361 3.43719 3.54476 3.90818 4.09481 4.18348 4.35249 4.39337 4.46346 4.51815 4.60054 4.69516 4.75367 4.76652 4.79955 4.98174 4.99955 5.01332 5.07463 5.10416 5.51659 5.53569 5.58989 5.77863 5.97313 6.18102 6.24916 6.73811 6.85916 6.94725 7.42571 7.56668 8.92826 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033359 B = 0.004009 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.160361 B = 6982.280921 C = 7154.359031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.043 0.957 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.588 6.588 14 N -0.720 5.720 15 C 0.133 3.867 16 C -0.056 4.056 17 C 0.492 3.508 18 O -0.531 6.531 19 O -0.507 6.507 20 C -0.144 4.144 21 C 0.057 3.943 22 O -0.393 6.393 23 C 0.051 3.949 24 C -0.132 4.132 25 H 0.018 0.982 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.264 0.736 29 H 0.413 0.587 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.429 0.571 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 3.596 -18.795 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.061 0.939 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.311 3.689 13 O -0.468 6.468 14 N -0.376 5.376 15 C 0.009 3.991 16 C -0.057 4.057 17 C 0.335 3.665 18 O -0.421 6.421 19 O -0.321 6.321 20 C -0.182 4.182 21 C -0.019 4.019 22 O -0.312 6.312 23 C -0.025 4.025 24 C -0.170 4.170 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.253 0.747 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.292 0.708 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.063 0.937 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.019 2.974 -18.942 19.201 hybrid contribution -0.870 -0.445 1.219 1.562 sum -1.889 2.529 -17.723 18.002 Atomic orbital electron populations 1.21535 0.94996 0.99194 1.01812 1.18798 0.95404 0.95974 0.89487 0.93931 1.21269 1.31596 1.12732 0.91192 0.93404 1.25557 0.95234 0.95745 1.01294 1.69933 1.37134 1.23526 1.24293 0.85692 0.78694 0.78693 0.79022 1.20182 1.20006 1.20352 1.21537 0.78150 0.83654 0.85546 1.90511 1.40043 1.28662 1.87573 1.46084 1.54350 1.32911 1.04275 1.21270 1.00183 0.95419 0.82208 1.20930 0.87224 1.00021 0.97539 1.23350 0.91438 0.73339 0.78408 1.90665 1.70860 1.43475 1.37061 1.84432 1.28574 1.72299 1.46819 1.22405 1.03918 0.91690 1.00173 1.22759 0.98172 0.96657 0.84337 1.87926 1.71938 1.25055 1.46281 1.22857 0.99510 0.81992 0.98139 1.22139 1.03199 0.99953 0.91699 0.96234 0.91211 0.92592 0.92641 0.74708 0.92468 0.89797 0.70775 0.88787 0.88172 0.86116 0.93747 0.86773 0.92336 0.87803 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.87 71.98 0.64 -4.56 16 2 C 0.02 1.21 2.64 -12.28 -0.03 1.17 16 3 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -30.33 8.37 25.60 0.21 -30.12 16 5 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -50.32 11.32 21.45 0.24 -50.08 16 8 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.52 23.23 7.15 87.66 0.63 23.86 16 13 O -0.59 -30.66 15.46 -3.02 -0.05 -30.71 16 14 N -0.72 -23.06 4.68 -463.04 -2.17 -25.22 16 15 C 0.13 3.56 4.56 86.38 0.39 3.95 16 16 C -0.06 -1.13 0.51 -52.81 -0.03 -1.16 16 17 C 0.49 10.71 5.58 71.24 0.40 11.11 16 18 O -0.53 -13.50 14.61 21.95 0.32 -13.18 16 19 O -0.51 -9.33 10.90 -51.34 -0.56 -9.89 16 20 C -0.14 -2.50 4.68 30.75 0.14 -2.36 16 21 C 0.06 0.94 6.62 72.07 0.48 1.42 16 22 O -0.39 -7.76 10.77 -148.98 -1.60 -9.37 16 23 C 0.05 0.93 6.55 72.01 0.47 1.40 16 24 C -0.13 -2.36 4.56 30.68 0.14 -2.22 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 3.43 6.07 -2.38 -0.01 3.42 16 27 H 0.06 1.96 7.56 -2.39 -0.02 1.95 16 28 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.41 11.46 4.79 -92.71 -0.44 11.02 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.43 4.57 9.10 -74.05 -0.67 3.90 16 33 H 0.09 1.60 6.90 -2.38 -0.02 1.58 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 0.75 7.38 -2.39 -0.02 0.73 16 37 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.06 1.23 5.82 -2.39 -0.01 1.22 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.57 8.03 -2.39 -0.02 1.55 16 Total: -1.00 -71.10 319.84 2.06 -69.04 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.04 Total: 18.72 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 3.89 Total: 4.11 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -1.92 Total: -75.31 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -1.89 Total: -63.14 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.10 2.06 -69.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.244 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds