Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46769 * 90.00151 * 8 6 4 10 10 H 1.48493 * 109.47324 * 210.00220 * 8 6 4 11 11 H 1.48499 * 109.47110 * 330.00316 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46777 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.90188 * 185.35183 * 16 15 14 18 18 C 1.53989 * 109.92313 * 306.45536 * 16 15 14 19 19 C 1.54594 * 105.14403 * 120.57765 * 18 16 15 20 20 C 1.54935 * 102.91797 * 21.96176 * 19 18 16 21 21 N 1.47907 * 109.91845 * 64.04665 * 16 15 14 22 22 C 1.46905 * 110.99836 * 94.79732 * 21 16 15 23 23 C 1.50704 * 109.46717 * 170.00103 * 22 21 16 24 24 O 1.20828 * 119.99944 * 359.97438 * 23 22 21 25 25 O 1.34226 * 119.99872 * 180.02562 * 23 22 21 26 26 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 27 27 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 28 28 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 31 31 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 32 32 H 1.09006 * 110.30767 * 239.50186 * 18 16 15 33 33 H 1.09000 * 110.30607 * 1.56047 * 18 16 15 34 34 H 1.08996 * 110.72248 * 140.31479 * 19 18 16 35 35 H 1.08995 * 110.72233 * 263.42623 * 19 18 16 36 36 H 1.08997 * 110.67022 * 81.01889 * 20 19 18 37 37 H 1.09000 * 110.66628 * 203.98847 * 20 19 18 38 38 H 1.08995 * 109.47233 * 289.99939 * 22 21 16 39 39 H 1.09001 * 109.47113 * 50.00599 * 22 21 16 40 40 H 0.96689 * 117.00127 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1613 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 6 1.7567 -0.3187 4.8833 17 1 2.2189 -0.8061 5.7418 18 6 2.1257 1.1762 4.8673 19 6 0.7800 1.9259 4.9974 20 6 -0.1485 0.8626 5.6361 21 7 0.2834 -0.4008 4.9851 22 6 -0.1253 -1.5680 5.7779 23 6 -1.6021 -1.4865 6.0673 24 8 -2.2476 -0.5517 5.6558 25 8 -2.2000 -2.4518 6.7831 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7086 1.1614 -3.4844 30 1 1.8643 -2.0130 3.5567 31 1 3.3172 -0.9848 3.5564 32 1 2.7748 1.4147 5.7099 33 1 2.6154 1.4349 3.9284 34 1 0.8824 2.7914 5.6519 35 1 0.4097 2.2266 4.0174 36 1 0.0076 0.8129 6.7137 37 1 -1.1927 1.0776 5.4093 38 1 0.0854 -2.4793 5.2182 39 1 0.4286 -1.5818 6.7165 40 1 -3.1487 -2.3558 6.9433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = -169.458012 kcal Electronic energy + Delta-G solvation = -23342.117693 eV Core-core repulsion = 19736.238997 eV Total energy + Delta-G solvation = -3605.878696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.70080 -39.59840 -38.58656 -36.30593 -35.42666 -33.78689 -32.58487 -30.91352 -30.12688 -27.36730 -25.30590 -25.09842 -22.85129 -22.07416 -21.08488 -20.28073 -19.49843 -18.21361 -16.93673 -16.65226 -16.17259 -16.04087 -15.85832 -15.58242 -15.35565 -14.86653 -14.20673 -13.97818 -13.56254 -13.19683 -13.03362 -12.68496 -12.54058 -12.31102 -11.88030 -11.73977 -11.58934 -11.49804 -11.16598 -11.00689 -10.86150 -10.71251 -10.58331 -10.54417 -10.26116 -10.22578 -9.99365 -9.86391 -9.02190 -8.95199 -8.56926 -8.37829 -6.03903 -4.08968 2.01216 2.64909 3.33939 3.39386 3.43356 3.45384 3.63820 3.76200 4.45825 4.52510 4.71665 4.80322 4.94527 5.01641 5.11397 5.16108 5.26735 5.29295 5.49494 5.57230 5.62335 5.76170 5.90788 5.98567 6.16219 6.26825 6.31505 6.41328 6.74247 6.76966 6.79110 7.00293 7.03795 7.37521 7.54897 7.71715 7.83306 8.03082 8.23312 8.95670 9.04003 9.56072 11.03347 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.003958 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.608494 B = 7073.073522 C = 7343.585127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 H 0.062 0.938 4 C -0.511 4.511 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.464 3.536 13 O -0.525 6.525 14 O -0.346 6.346 15 C 0.078 3.922 16 C 0.070 3.930 17 H 0.071 0.929 18 C -0.124 4.124 19 C -0.120 4.120 20 C 0.030 3.970 21 N -0.490 5.490 22 C 0.052 3.948 23 C 0.478 3.522 24 O -0.494 6.494 25 O -0.521 6.521 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 -1.007 20.513 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.549 4.549 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.413 6.413 14 O -0.263 6.263 15 C 0.003 3.997 16 C -0.038 4.038 17 H 0.089 0.911 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.097 4.097 21 N -0.216 5.216 22 C -0.077 4.077 23 C 0.319 3.681 24 O -0.380 6.380 25 O -0.333 6.333 26 H 0.045 0.955 27 H 0.112 0.888 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -2.396 -1.047 19.674 19.847 hybrid contribution 0.100 -0.622 0.180 0.655 sum -2.297 -1.669 19.855 20.057 Atomic orbital electron populations 1.21694 0.95523 0.99935 1.01701 1.18716 0.94893 0.96807 0.85659 0.92044 1.21148 1.31718 1.13125 0.88895 0.90755 1.24933 0.94987 0.95029 0.99068 1.69892 1.36620 1.22843 1.23712 0.86404 0.79411 0.79226 0.81892 1.20585 1.21189 1.19732 1.25313 0.76353 0.83186 0.84281 1.90484 1.36763 1.27003 1.87005 1.86675 1.69990 1.54938 1.14732 1.22720 0.97614 0.95265 0.84120 1.22569 0.87427 0.97775 0.96043 0.91076 1.22375 0.98086 0.92695 1.03005 1.22458 0.94337 0.96907 1.02108 1.23542 1.02335 0.88688 0.95117 1.64673 1.10290 1.00993 1.45686 1.21855 0.88503 0.98416 0.98909 1.23248 0.91331 0.79199 0.74302 1.90705 1.66087 1.33044 1.48197 1.84499 1.30414 1.50075 1.68280 0.95492 0.88846 0.95223 0.92793 0.92009 0.91521 0.91676 0.89594 0.91342 0.89744 0.94724 0.87271 0.86345 0.90606 0.72988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.90 37.16 0.33 -2.90 16 2 C 0.06 1.51 2.74 -92.92 -0.25 1.26 16 3 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 4 C -0.51 -14.62 8.37 -34.44 -0.29 -14.91 16 5 H 0.07 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.46 11.07 7.25 36.00 0.26 11.33 16 13 O -0.52 -13.55 15.21 -18.76 -0.29 -13.83 16 14 O -0.35 -6.89 9.15 -39.24 -0.36 -7.25 16 15 C 0.08 1.21 5.21 37.16 0.19 1.41 16 16 C 0.07 0.84 2.88 -66.64 -0.19 0.64 16 17 H 0.07 0.65 7.58 -51.93 -0.39 0.26 16 18 C -0.12 -1.42 6.29 -25.38 -0.16 -1.58 16 19 C -0.12 -1.40 7.06 -24.87 -0.18 -1.58 16 20 C 0.03 0.36 5.30 -1.90 -0.01 0.35 16 21 N -0.49 -6.34 4.84 -224.00 -1.09 -7.42 16 22 C 0.05 0.53 5.63 -4.97 -0.03 0.50 16 23 C 0.48 5.21 8.04 36.01 0.29 5.50 16 24 O -0.49 -6.97 14.28 -18.75 -0.27 -7.23 16 25 O -0.52 -4.18 13.42 -39.25 -0.53 -4.71 16 26 H 0.03 0.60 8.11 -51.92 -0.42 0.18 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.14 7.18 -51.93 -0.37 0.77 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.03 0.36 8.02 -51.93 -0.42 -0.06 16 37 H 0.11 1.52 5.98 -51.93 -0.31 1.21 16 38 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 0.57 7.82 -51.93 -0.41 0.17 16 40 H 0.41 1.65 9.10 45.56 0.41 2.06 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -33.57 332.11 -7.13 -40.70 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.09 Total: 0.97 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.13 Total: 1.64 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: -0.46 Total: -32.07 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.44 Total: -33.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.57 -7.13 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.760 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds