Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46769 * 90.00151 * 8 6 4 10 10 H 1.48493 * 109.47324 * 210.00220 * 8 6 4 11 11 H 1.48499 * 109.47110 * 330.00316 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46777 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.90188 * 185.35183 * 16 15 14 18 18 C 1.53989 * 109.92313 * 306.45536 * 16 15 14 19 19 C 1.54594 * 105.14403 * 120.57765 * 18 16 15 20 20 C 1.54935 * 102.91797 * 21.96176 * 19 18 16 21 21 N 1.47907 * 109.91845 * 64.04665 * 16 15 14 22 22 C 1.46905 * 110.99836 * 94.79732 * 21 16 15 23 23 C 1.50704 * 109.46717 * 170.00103 * 22 21 16 24 24 O 1.20828 * 119.99944 * 359.97438 * 23 22 21 25 25 O 1.34226 * 119.99872 * 180.02562 * 23 22 21 26 26 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 27 27 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 28 28 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 31 31 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 32 32 H 1.09006 * 110.30767 * 239.50186 * 18 16 15 33 33 H 1.09000 * 110.30607 * 1.56047 * 18 16 15 34 34 H 1.08996 * 110.72248 * 140.31479 * 19 18 16 35 35 H 1.08995 * 110.72233 * 263.42623 * 19 18 16 36 36 H 1.08997 * 110.67022 * 81.01889 * 20 19 18 37 37 H 1.09000 * 110.66628 * 203.98847 * 20 19 18 38 38 H 1.08995 * 109.47233 * 289.99939 * 22 21 16 39 39 H 1.09001 * 109.47113 * 50.00599 * 22 21 16 40 40 H 0.96689 * 117.00127 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1613 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 6 1.7567 -0.3187 4.8833 17 1 2.2189 -0.8061 5.7418 18 6 2.1257 1.1762 4.8673 19 6 0.7800 1.9259 4.9974 20 6 -0.1485 0.8626 5.6361 21 7 0.2834 -0.4008 4.9851 22 6 -0.1253 -1.5680 5.7779 23 6 -1.6021 -1.4865 6.0673 24 8 -2.2476 -0.5517 5.6558 25 8 -2.2000 -2.4518 6.7831 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7086 1.1614 -3.4844 30 1 1.8643 -2.0130 3.5567 31 1 3.3172 -0.9848 3.5564 32 1 2.7748 1.4147 5.7099 33 1 2.6154 1.4349 3.9284 34 1 0.8824 2.7914 5.6519 35 1 0.4097 2.2266 4.0174 36 1 0.0076 0.8129 6.7137 37 1 -1.1927 1.0776 5.4093 38 1 0.0854 -2.4793 5.2182 39 1 0.4286 -1.5818 6.7165 40 1 -3.1487 -2.3558 6.9433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -192.886841 kcal Electronic energy + Delta-G solvation = -23343.133643 eV Core-core repulsion = 19736.238997 eV Total energy + Delta-G solvation = -3606.894646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61138 -41.16214 -39.66792 -37.28816 -36.93184 -35.87972 -33.45200 -32.74046 -31.50449 -28.20176 -27.27027 -26.51851 -24.66199 -22.92073 -21.94758 -21.74207 -20.88352 -19.01964 -18.54047 -18.10789 -17.67372 -17.36885 -17.12537 -16.95612 -16.53997 -16.25433 -15.69918 -15.28063 -14.65330 -14.45225 -14.42127 -14.03590 -13.90918 -13.48000 -13.27650 -13.01453 -12.94357 -12.73639 -12.66893 -12.57265 -12.45909 -12.28029 -12.08994 -12.04188 -11.89761 -11.49992 -11.37380 -11.16182 -11.07829 -10.94299 -10.51327 -9.43337 -8.17958 -6.31381 1.20888 1.42700 1.43185 1.53918 1.55228 1.93230 2.06214 2.46308 2.89758 3.11736 3.60433 3.73914 4.00650 4.13937 4.17793 4.28462 4.31602 4.37851 4.39422 4.45721 4.55903 4.69211 4.71808 4.81982 4.94154 5.01624 5.04688 5.09471 5.26491 5.36889 5.41948 5.55945 5.68235 5.71963 5.88629 5.90080 5.95360 6.13013 6.75374 7.02488 7.16860 7.37423 8.88506 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.003958 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.608494 B = 7073.073522 C = 7343.585127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.051 3.949 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.471 3.529 13 O -0.549 6.549 14 O -0.343 6.343 15 C 0.069 3.931 16 C 0.077 3.923 17 H 0.114 0.886 18 C -0.122 4.122 19 C -0.120 4.120 20 C 0.038 3.962 21 N -0.525 5.525 22 C 0.049 3.951 23 C 0.481 3.519 24 O -0.534 6.534 25 O -0.512 6.512 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.267 0.733 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 -1.613 22.197 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.032 3.968 3 H 0.065 0.935 4 C -0.575 4.575 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.440 6.440 14 O -0.260 6.260 15 C -0.006 4.006 16 C -0.031 4.031 17 H 0.131 0.869 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.089 4.089 21 N -0.251 5.251 22 C -0.079 4.079 23 C 0.324 3.676 24 O -0.424 6.424 25 O -0.326 6.326 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -1.931 -1.654 21.398 21.548 hybrid contribution -0.104 -0.447 -0.229 0.513 sum -2.035 -2.100 21.169 21.370 Atomic orbital electron populations 1.21488 0.94772 0.99427 1.01532 1.18614 0.95517 0.96063 0.86644 0.93456 1.21265 1.32497 1.13208 0.90554 0.92562 1.25669 0.94923 0.95654 1.01637 1.69978 1.36751 1.23479 1.24659 0.85461 0.78729 0.78410 0.78494 1.19866 1.19880 1.19902 1.24710 0.75864 0.82488 0.85229 1.90459 1.37861 1.27963 1.87682 1.86629 1.69608 1.55147 1.14586 1.23197 0.98225 0.95351 0.83786 1.22599 0.87410 0.98031 0.95011 0.86859 1.22391 0.98128 0.92382 1.03145 1.22443 0.94483 0.97922 1.01005 1.23392 1.00850 0.88340 0.96282 1.64498 1.10825 1.02173 1.47626 1.21965 0.88313 0.97372 1.00270 1.23454 0.91705 0.78773 0.73638 1.90710 1.67010 1.34693 1.49950 1.84461 1.31985 1.48843 1.67300 0.93863 0.90630 0.95738 0.92334 0.92159 0.90782 0.88365 0.92034 0.89025 0.92883 0.92381 0.89735 0.85891 0.87092 0.70977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 8.90 71.98 0.64 -5.13 16 2 C 0.05 2.71 2.74 -12.29 -0.03 2.67 16 3 H 0.05 2.63 8.14 -2.39 -0.02 2.61 16 4 C -0.54 -31.41 8.37 25.60 0.21 -31.19 16 5 H 0.06 3.44 6.76 -2.91 -0.02 3.42 16 6 C 0.02 1.18 5.30 84.65 0.45 1.62 16 7 N -0.91 -51.94 11.32 21.45 0.24 -51.69 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 12 C 0.47 22.89 7.25 71.23 0.52 23.41 16 13 O -0.55 -28.78 15.21 21.94 0.33 -28.45 16 14 O -0.34 -13.72 9.15 -51.35 -0.47 -14.19 16 15 C 0.07 2.05 5.21 71.98 0.38 2.42 16 16 C 0.08 1.64 2.88 45.06 0.13 1.77 16 17 H 0.11 1.52 7.58 -2.39 -0.02 1.50 16 18 C -0.12 -2.55 6.29 31.47 0.20 -2.35 16 19 C -0.12 -2.66 7.06 31.80 0.22 -2.44 16 20 C 0.04 0.85 5.30 86.65 0.46 1.31 16 21 N -0.52 -12.57 4.84 -862.60 -4.18 -16.75 16 22 C 0.05 0.86 5.63 85.56 0.48 1.34 16 23 C 0.48 9.69 8.04 71.24 0.57 10.26 16 24 O -0.53 -14.83 14.28 21.96 0.31 -14.51 16 25 O -0.51 -7.08 13.42 -51.38 -0.69 -7.77 16 26 H 0.04 1.97 8.11 -2.38 -0.02 1.95 16 27 H 0.08 4.08 6.07 -2.39 -0.01 4.07 16 28 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 32 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 1.59 7.18 -2.39 -0.02 1.57 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.01 8.02 -2.39 -0.02 0.99 16 37 H 0.08 2.35 5.98 -2.39 -0.01 2.33 16 38 H 0.12 2.04 8.14 -2.39 -0.02 2.03 16 39 H 0.11 1.17 7.82 -2.39 -0.02 1.15 16 40 H 0.43 2.61 9.10 -74.06 -0.67 1.94 16 Total: -1.00 -73.50 332.11 2.19 -71.31 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.38 Total: 11.58 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 4.23 Total: 3.70 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -3.94 Total: -68.44 kcal Atomic # 8 Polarization: -64.41 SS G_CDS: -0.51 Total: -64.93 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -73.50 2.19 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.572 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds