Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.50699 * 109.47056 * 120.00188 * 2 1 3 5 5 H 1.08002 * 119.99537 * 119.99650 * 4 2 1 6 6 C 1.37867 * 119.99976 * 299.99842 * 4 2 1 7 7 N 1.31518 * 120.00372 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00036 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46857 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46859 * 119.99847 * 8 6 4 11 11 H 1.48496 * 109.47309 * 239.99949 * 8 6 4 12 12 C 1.50703 * 109.46629 * 240.00288 * 2 1 3 13 13 O 1.20831 * 119.99398 * 239.99681 * 12 2 1 14 14 O 1.34224 * 120.00596 * 60.00158 * 12 2 1 15 15 C 1.45197 * 117.00180 * 179.97438 * 14 12 2 16 16 C 1.53007 * 109.46960 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.36779 * 174.29826 * 16 15 14 18 18 C 1.54385 * 110.41003 * 51.94851 * 16 15 14 19 19 C 1.54266 * 105.05754 * 217.24911 * 18 16 15 20 20 C 1.54375 * 105.06062 * 0.02562 * 19 18 16 21 21 N 1.48556 * 110.50984 * 296.71779 * 16 15 14 22 22 C 1.46901 * 110.99998 * 277.86739 * 21 16 15 23 23 C 1.50701 * 109.47218 * 169.99964 * 22 21 16 24 24 O 1.20823 * 119.99800 * 0.02562 * 23 22 21 25 25 O 1.34226 * 119.99953 * 179.97438 * 23 22 21 26 26 H 1.09000 * 109.47613 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47364 * 299.99988 * 1 2 3 28 28 H 1.09001 * 109.47191 * 59.99466 * 1 2 3 29 29 H 0.96998 * 120.00256 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47176 * 60.00057 * 15 14 12 31 31 H 1.08997 * 109.47237 * 299.99345 * 15 14 12 32 32 H 1.08995 * 110.32619 * 336.14440 * 18 16 15 33 33 H 1.08993 * 110.32239 * 98.25548 * 18 16 15 34 34 H 1.09001 * 110.32231 * 118.89861 * 19 18 16 35 35 H 1.08997 * 110.32144 * 241.10248 * 19 18 16 36 36 H 1.08996 * 110.41381 * 142.63179 * 20 19 18 37 37 H 1.09007 * 110.41450 * 264.95351 * 20 19 18 38 38 H 1.09001 * 109.47468 * 290.00034 * 22 21 16 39 39 H 1.08996 * 109.47029 * 50.00191 * 22 21 16 40 40 H 0.96701 * 116.99885 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.1464 -2.2872 3.6036 10 1 3.1466 -0.1876 4.8164 11 1 1.1661 -1.5868 4.8160 12 6 2.0322 -0.7104 -1.2306 13 8 2.7269 -1.6928 -1.1197 14 8 1.7080 -0.2518 -2.4497 15 6 2.2275 -0.9857 -3.5897 16 6 1.7564 -0.3184 -4.8835 17 1 2.2191 -0.7962 -5.7471 18 6 2.0854 1.1898 -4.8621 19 6 0.8866 1.8713 -5.5537 20 6 -0.0660 0.7177 -5.9341 21 7 0.2758 -0.3771 -4.9902 22 6 -0.1632 -1.6784 -5.5117 23 6 -1.6596 -1.7947 -5.3768 24 8 -2.2952 -0.8866 -4.8961 25 8 -2.2864 -2.9068 -5.7917 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.7090 1.1613 3.4844 30 1 1.8640 -2.0128 -3.5569 31 1 3.3170 -0.9845 -3.5567 32 1 2.1803 1.5421 -3.8350 33 1 3.0043 1.3847 -5.4150 34 1 0.3932 2.5582 -4.8660 35 1 1.2163 2.4010 -6.4475 36 1 -1.1041 1.0229 -5.8030 37 1 0.1098 0.4029 -6.9629 38 1 0.1144 -1.7612 -6.5625 39 1 0.3158 -2.4771 -4.9454 40 1 -3.2471 -2.9350 -5.6849 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988002.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -173.099826 kcal Electronic energy + Delta-G solvation = -23366.297008 eV Core-core repulsion = 19760.260391 eV Total energy + Delta-G solvation = -3606.036617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50078 -39.61070 -38.63542 -36.15419 -35.48191 -33.79380 -32.61735 -30.96584 -30.15675 -27.36143 -25.36918 -25.10475 -22.90002 -22.07349 -20.86353 -20.35703 -19.50259 -18.10882 -16.85603 -16.64934 -16.17470 -16.03248 -15.90185 -15.53842 -15.44932 -14.92057 -14.26492 -13.93948 -13.56940 -13.16630 -13.03098 -12.69572 -12.45030 -12.36414 -11.96797 -11.64743 -11.51543 -11.42032 -11.22734 -11.01034 -10.84634 -10.68273 -10.61065 -10.56253 -10.47493 -10.24066 -9.99960 -9.89047 -9.03852 -8.94483 -8.65076 -8.38745 -6.04197 -4.09356 2.15201 2.71342 3.32173 3.39206 3.42108 3.45531 3.61923 3.78915 4.43222 4.47130 4.64619 4.78955 4.97147 4.99139 5.06661 5.15140 5.24028 5.28916 5.40259 5.50969 5.58790 5.69127 5.84047 5.89913 6.10251 6.24562 6.28598 6.40124 6.67635 6.73208 6.78802 7.00277 7.04464 7.35301 7.54498 7.83108 7.84042 8.02926 8.22789 8.94784 9.02604 9.55810 11.03130 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020029 B = 0.004230 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.619087 B = 6617.664108 C = 7087.448753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 H 0.062 0.938 4 C -0.510 4.510 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.902 3.098 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.524 6.524 14 O -0.345 6.345 15 C 0.076 3.924 16 C 0.067 3.933 17 H 0.071 0.929 18 C -0.119 4.119 19 C -0.120 4.120 20 C 0.032 3.968 21 N -0.482 5.482 22 C 0.050 3.950 23 C 0.477 3.523 24 O -0.488 6.488 25 O -0.524 6.524 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -1.491 -20.292 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.548 4.548 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.309 3.691 13 O -0.412 6.412 14 O -0.263 6.263 15 C 0.001 3.999 16 C -0.041 4.041 17 H 0.089 0.911 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.095 4.095 21 N -0.208 5.208 22 C -0.079 4.079 23 C 0.317 3.683 24 O -0.374 6.374 25 O -0.336 6.336 26 H 0.047 0.953 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.134 0.866 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.127 -1.351 -19.538 19.700 hybrid contribution 0.045 -0.866 0.044 0.868 sum -2.082 -2.217 -19.494 19.730 Atomic orbital electron populations 1.21694 0.95488 0.99913 1.01783 1.18730 0.94911 0.96832 0.85614 0.91998 1.21185 1.31656 1.13121 0.88873 0.90693 1.24935 0.94980 0.95041 0.99084 1.69901 1.36651 1.22870 1.23622 0.86356 0.78622 0.79715 0.82307 1.19565 1.20941 1.20939 1.25343 0.76330 0.83192 0.84251 1.90485 1.36746 1.26997 1.86982 1.86687 1.69990 1.54867 1.14724 1.22659 0.97997 0.95082 0.84197 1.22802 0.87465 0.98017 0.95828 0.91112 1.22297 0.97558 0.92609 1.03245 1.22242 0.95747 0.97467 1.00351 1.23228 1.01532 0.91818 0.92960 1.65069 1.10908 1.00869 1.43927 1.21722 0.89180 0.95756 1.01276 1.23204 0.91419 0.79310 0.74368 1.90750 1.67520 1.39629 1.39454 1.84491 1.28462 1.42430 1.78225 0.95275 0.88817 0.95422 0.92832 0.92093 0.91227 0.89002 0.91256 0.90398 0.91480 0.89124 0.94184 0.90445 0.86581 0.73063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.90 37.16 0.33 -2.95 16 2 C 0.06 1.52 2.74 -92.92 -0.25 1.26 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 4 C -0.51 -14.64 8.37 -34.44 -0.29 -14.92 16 5 H 0.07 2.24 6.76 -52.49 -0.35 1.89 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.46 11.10 7.25 36.01 0.26 11.36 16 13 O -0.52 -13.52 15.21 -18.75 -0.29 -13.81 16 14 O -0.35 -6.91 8.86 -39.24 -0.35 -7.26 16 15 C 0.08 1.17 5.30 37.16 0.20 1.36 16 16 C 0.07 0.79 2.68 -66.07 -0.18 0.61 16 17 H 0.07 0.63 8.00 -51.93 -0.42 0.22 16 18 C -0.12 -1.36 6.45 -25.34 -0.16 -1.52 16 19 C -0.12 -1.25 7.00 -25.35 -0.18 -1.43 16 20 C 0.03 0.35 5.92 -2.20 -0.01 0.34 16 21 N -0.48 -6.23 4.62 -223.58 -1.03 -7.26 16 22 C 0.05 0.53 5.38 -4.97 -0.03 0.50 16 23 C 0.48 5.75 8.18 36.01 0.29 6.04 16 24 O -0.49 -7.71 15.98 -18.75 -0.30 -8.01 16 25 O -0.52 -4.77 13.42 -39.25 -0.53 -5.30 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 28 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.06 0.94 7.21 -51.93 -0.37 0.56 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.09 1.28 6.93 -51.93 -0.36 0.92 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.14 7.24 -51.93 -0.38 0.76 16 37 H 0.04 0.36 7.75 -51.92 -0.40 -0.05 16 38 H 0.08 0.60 7.77 -51.93 -0.40 0.19 16 39 H 0.12 1.17 7.12 -51.93 -0.37 0.80 16 40 H 0.41 2.13 9.10 45.56 0.41 2.55 16 LS Contribution 332.95 15.07 5.02 5.02 Total: -1.00 -34.20 332.95 -7.03 -41.23 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.05 Total: 1.05 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -0.11 Total: 2.27 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: -0.40 Total: -32.01 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.46 Total: -34.37 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.20 -7.03 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988002.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.871 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds