Wall clock time and date at job start Tue Mar 31 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47780 * 2 1 4 4 C 1.50703 * 109.46875 * 120.00272 * 2 1 3 5 5 H 1.07999 * 120.00069 * 119.99996 * 4 2 1 6 6 C 1.37875 * 119.99922 * 299.99145 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00030 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46707 * 60.00412 * 8 6 4 10 10 H 1.48497 * 109.47213 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47416 * 300.00737 * 8 6 4 12 12 C 1.50707 * 109.46675 * 239.99698 * 2 1 3 13 13 O 1.20828 * 119.99642 * 239.99849 * 12 2 1 14 14 O 1.34222 * 119.99937 * 60.00751 * 12 2 1 15 15 C 1.45199 * 117.00202 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47442 * 179.97438 * 15 14 12 17 17 H 1.09006 * 109.88263 * 186.74171 * 16 15 14 18 18 C 1.54327 * 109.88775 * 307.93605 * 16 15 14 19 19 C 1.55138 * 103.01936 * 141.68906 * 18 16 15 20 20 C 1.54912 * 101.65333 * 324.35154 * 19 18 16 21 21 N 1.47438 * 109.88953 * 65.70667 * 16 15 14 22 22 C 1.46895 * 111.00090 * 3.85090 * 21 16 15 23 23 C 1.50700 * 109.47334 * 170.05112 * 22 21 16 24 24 O 1.20826 * 119.99877 * 0.02562 * 23 22 21 25 25 O 1.34229 * 120.00198 * 179.72639 * 23 22 21 26 26 H 1.08995 * 109.46792 * 300.00282 * 1 2 3 27 27 H 1.08996 * 109.46673 * 59.99912 * 1 2 3 28 28 H 1.09002 * 109.47214 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99731 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47107 * 59.99686 * 15 14 12 31 31 H 1.09002 * 109.47136 * 299.99870 * 15 14 12 32 32 H 1.09002 * 110.70531 * 260.07662 * 18 16 15 33 33 H 1.09006 * 110.70213 * 23.13186 * 18 16 15 34 34 H 1.08999 * 110.98933 * 82.43990 * 19 18 16 35 35 H 1.08997 * 110.99153 * 206.22219 * 19 18 16 36 36 H 1.09001 * 110.36583 * 278.23833 * 20 19 18 37 37 H 1.08998 * 110.37410 * 155.90113 * 20 19 18 38 38 H 1.09004 * 109.46842 * 50.05401 * 22 21 16 39 39 H 1.09000 * 109.47400 * 290.05447 * 22 21 16 40 40 H 0.96698 * 116.99864 * 180.27699 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3213 -1.1205 4.0080 9 1 3.8064 -1.1211 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8258 -2.5203 4.0078 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7081 -0.2519 -2.4496 15 6 2.2276 -0.9858 -3.5897 16 6 1.7555 -0.3193 -4.8834 17 1 2.0403 -0.9300 -5.7403 18 6 0.2235 -0.1363 -4.8510 19 6 0.0224 1.2466 -5.5247 20 6 1.2648 2.0233 -5.0218 21 7 2.3534 1.0230 -5.0032 22 6 3.2885 1.2832 -3.9006 23 6 4.0577 2.5482 -4.1821 24 8 3.8480 3.1695 -5.1968 25 8 4.9714 2.9878 -3.3026 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7084 1.1610 3.4844 30 1 1.8640 -2.0129 -3.5569 31 1 3.3171 -0.9848 -3.5566 32 1 -0.2706 -0.9202 -5.4250 33 1 -0.1415 -0.1244 -3.8239 34 1 0.0314 1.1568 -6.6109 35 1 -0.8986 1.7179 -5.1816 36 1 1.0890 2.4116 -4.0186 37 1 1.5075 2.8356 -5.7069 38 1 3.9833 0.4483 -3.8089 39 1 2.7313 1.3960 -2.9706 40 1 5.4365 3.8060 -3.5248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:24 Heat of formation + Delta-G solvation = -187.666000 kcal Electronic energy + Delta-G solvation = -23896.359109 eV Core-core repulsion = 20289.690856 eV Total energy + Delta-G solvation = -3606.668253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93404 -41.12110 -39.84191 -37.29282 -36.97707 -35.91930 -33.44767 -32.78067 -31.60487 -28.20464 -27.29112 -26.60297 -24.74281 -23.12144 -22.22033 -21.61403 -20.62828 -19.22532 -18.56226 -18.27951 -17.94100 -17.57699 -17.02493 -16.87351 -16.45700 -16.19583 -15.90559 -15.38249 -14.79880 -14.52265 -14.27853 -14.10606 -13.90242 -13.47329 -13.43079 -13.00947 -12.93470 -12.76863 -12.61495 -12.60425 -12.46115 -12.29329 -12.05867 -12.00010 -11.94532 -11.62638 -11.53466 -11.35028 -11.12058 -11.03794 -10.53255 -9.45569 -8.20187 -6.33225 1.16620 1.42698 1.43465 1.46501 1.52001 1.85584 1.92815 2.43634 2.96298 3.10384 3.50310 3.69877 3.78593 4.00156 4.17618 4.23740 4.26123 4.32274 4.42074 4.48160 4.57003 4.63729 4.68456 4.89794 4.93196 4.98884 5.04323 5.08967 5.14676 5.37944 5.39651 5.48311 5.58359 5.68931 5.77592 5.83853 5.88815 6.10991 6.73227 7.00877 7.05575 7.35927 8.85774 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.004899 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.190725 B = 5714.318528 C = 6317.212372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.274 1.274 12 C 0.474 3.526 13 O -0.540 6.540 14 O -0.354 6.354 15 C 0.031 3.969 16 C 0.083 3.917 17 H 0.135 0.865 18 C -0.136 4.136 19 C -0.117 4.117 20 C 0.040 3.960 21 N -0.510 5.510 22 C 0.041 3.959 23 C 0.485 3.515 24 O -0.527 6.527 25 O -0.517 6.517 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.028 0.972 29 H 0.268 0.732 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 1.851 -15.268 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.032 3.968 3 H 0.066 0.934 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.320 3.680 13 O -0.429 6.429 14 O -0.271 6.271 15 C -0.044 4.044 16 C -0.024 4.024 17 H 0.153 0.847 18 C -0.174 4.174 19 C -0.155 4.155 20 C -0.087 4.087 21 N -0.236 5.236 22 C -0.088 4.088 23 C 0.327 3.673 24 O -0.416 6.416 25 O -0.331 6.331 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 0.242 1.529 -15.769 15.844 hybrid contribution 0.494 0.078 1.642 1.717 sum 0.737 1.607 -14.126 14.236 Atomic orbital electron populations 1.21542 0.94453 0.99825 1.01870 1.18648 0.95783 0.96003 0.86382 0.93414 1.21228 1.32589 1.13265 0.90539 0.92544 1.25607 0.94898 0.95614 1.01523 1.69951 1.36631 1.23403 1.24754 0.85571 0.78744 0.78709 0.78416 1.19943 1.20045 1.19892 1.24727 0.76030 0.82509 0.84776 1.90494 1.37346 1.27699 1.87403 1.86624 1.70269 1.55233 1.15007 1.23839 0.99709 0.96822 0.83997 1.22860 0.95296 0.89601 0.94636 0.84724 1.22830 0.93823 0.98852 1.01940 1.22648 0.96968 0.94537 1.01360 1.23147 0.90287 0.95317 0.99953 1.63546 1.16192 1.02947 1.40888 1.22136 0.97035 0.93939 0.95694 1.23407 0.77370 0.86440 0.80041 1.90665 1.65085 1.57869 1.28010 1.84535 1.51265 1.46904 1.50406 0.90654 0.93303 0.95253 0.92312 0.90190 0.90612 0.88228 0.91619 0.89275 0.89740 0.94647 0.90178 0.86115 0.89458 0.70998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.90 71.98 0.64 -4.75 16 2 C 0.05 2.51 2.74 -12.28 -0.03 2.47 16 3 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.54 -29.84 8.37 25.60 0.21 -29.63 16 5 H 0.06 3.28 6.76 -2.91 -0.02 3.26 16 6 C 0.02 1.28 5.30 84.65 0.45 1.72 16 7 N -0.91 -49.71 11.32 21.45 0.24 -49.46 16 8 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.47 20.78 7.25 71.24 0.52 21.29 16 13 O -0.54 -26.22 15.21 21.96 0.33 -25.88 16 14 O -0.35 -12.17 6.36 -51.34 -0.33 -12.49 16 15 C 0.03 0.82 4.38 71.98 0.32 1.14 16 16 C 0.08 1.77 3.85 45.26 0.17 1.94 16 17 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 18 C -0.14 -2.67 6.36 31.78 0.20 -2.47 16 19 C -0.12 -2.18 7.08 31.98 0.23 -1.95 16 20 C 0.04 0.98 5.74 86.77 0.50 1.48 16 21 N -0.51 -12.64 4.86 -865.05 -4.21 -16.85 16 22 C 0.04 1.10 4.20 85.56 0.36 1.46 16 23 C 0.48 13.22 8.12 71.24 0.58 13.80 16 24 O -0.53 -16.29 15.79 21.96 0.35 -15.95 16 25 O -0.52 -11.99 13.42 -51.41 -0.69 -12.68 16 26 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 27 H 0.05 1.90 8.11 -2.39 -0.02 1.88 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.08 2.04 5.96 -2.39 -0.01 2.02 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.59 6.91 -2.38 -0.02 1.58 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 0.96 7.62 -2.39 -0.02 0.94 16 37 H 0.08 2.06 7.38 -2.39 -0.02 2.05 16 38 H 0.12 3.09 5.92 -2.38 -0.01 3.08 16 39 H 0.09 2.72 5.66 -2.39 -0.01 2.71 16 40 H 0.43 5.71 9.10 -74.06 -0.67 5.03 16 Total: -1.00 -66.27 324.93 2.26 -64.01 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.39 Total: 17.58 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 4.14 Total: 6.50 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -3.97 Total: -66.32 kcal Atomic # 8 Polarization: -66.66 SS G_CDS: -0.34 Total: -67.00 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -66.27 2.26 -64.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.656 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds