Wall clock time and date at job start Tue Mar 31 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47013 * 2 1 4 4 C 1.50704 * 109.46754 * 240.00302 * 2 1 3 5 5 H 1.08002 * 119.99794 * 275.14987 * 4 2 1 6 6 C 1.37880 * 120.00050 * 95.14828 * 4 2 1 7 7 N 1.31515 * 119.99880 * 184.72508 * 6 4 2 8 8 Si 1.86797 * 119.99698 * 4.73151 * 6 4 2 9 9 H 1.48501 * 109.47594 * 84.87977 * 8 6 4 10 10 H 1.48506 * 109.46903 * 204.87786 * 8 6 4 11 11 H 1.48500 * 109.47276 * 324.87693 * 8 6 4 12 12 C 1.50695 * 109.47458 * 120.00742 * 2 1 3 13 13 O 1.20821 * 120.00592 * 119.99754 * 12 2 1 14 14 O 1.34233 * 119.99683 * 299.99874 * 12 2 1 15 15 C 1.45202 * 116.99895 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47074 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.88323 * 173.81103 * 16 15 14 18 18 C 1.54319 * 109.88820 * 52.78195 * 16 15 14 19 19 C 1.55396 * 102.90182 * 218.40456 * 18 16 15 20 20 C 1.54908 * 101.73879 * 35.48283 * 19 18 16 21 21 N 1.47442 * 109.89269 * 294.84768 * 16 15 14 22 22 C 1.46899 * 110.99749 * 356.14800 * 21 16 15 23 23 C 1.50699 * 109.47440 * 190.27663 * 22 21 16 24 24 O 1.20826 * 119.99693 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00473 * 179.97438 * 23 22 21 26 26 H 1.08994 * 109.47144 * 55.18411 * 1 2 3 27 27 H 1.08997 * 109.47021 * 175.19087 * 1 2 3 28 28 H 1.09000 * 109.46435 * 295.17995 * 1 2 3 29 29 H 0.97001 * 119.99643 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47523 * 299.99669 * 15 14 12 31 31 H 1.08997 * 109.47270 * 59.99955 * 15 14 12 32 32 H 1.08999 * 110.70982 * 336.69784 * 18 16 15 33 33 H 1.09009 * 110.70390 * 99.92656 * 18 16 15 34 34 H 1.08994 * 110.87468 * 277.39441 * 19 18 16 35 35 H 1.09002 * 111.02350 * 153.63431 * 19 18 16 36 36 H 1.09001 * 110.37410 * 204.18672 * 20 19 18 37 37 H 1.09007 * 110.46433 * 81.89559 * 20 19 18 38 38 H 1.09001 * 109.47088 * 310.27707 * 22 21 16 39 39 H 1.09002 * 109.47303 * 70.27419 * 22 21 16 40 40 H 0.96699 * 117.00305 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1331 -1.7857 -1.2300 6 6 2.3631 0.0125 -2.3571 7 7 2.7123 -0.6125 -3.4603 8 14 2.3153 1.8794 -2.3163 9 1 3.5995 2.3959 -1.7784 10 1 2.1101 2.3995 -3.6921 11 1 1.1983 2.3271 -1.4461 12 6 2.0324 -0.7105 1.2303 13 8 2.7270 -1.6929 1.1194 14 8 1.7082 -0.2520 2.4495 15 6 2.2279 -0.9860 3.5895 16 6 1.7568 -0.3189 4.8833 17 1 2.0502 -0.9245 5.7408 18 6 0.2229 -0.1514 4.8593 19 6 0.0149 1.2359 5.5278 20 6 1.2489 2.0204 5.0165 21 7 2.3450 1.0284 4.9960 22 6 3.2729 1.2921 3.8882 23 6 4.0395 2.5595 4.1657 24 8 3.8342 3.1793 5.1824 25 8 4.9510 2.9993 3.2841 26 1 -0.3633 0.5867 -0.8437 27 1 -0.3633 -1.0240 -0.0862 28 1 -0.3632 0.4372 0.9300 29 1 2.9454 -0.1039 -4.2528 30 1 1.8645 -2.0131 3.5567 31 1 3.3173 -0.9849 3.5564 32 1 -0.1480 -0.1444 3.8344 33 1 -0.2598 -0.9379 5.4395 34 1 0.0297 1.1496 6.6142 35 1 -0.9110 1.6993 5.1870 36 1 1.4886 2.8367 5.6978 37 1 1.0668 2.4055 4.0131 38 1 3.9699 0.4595 3.7921 39 1 2.7101 1.4034 2.9614 40 1 5.4177 3.8167 3.5059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:27 Heat of formation + Delta-G solvation = -164.964506 kcal Electronic energy + Delta-G solvation = -24033.598230 eV Core-core repulsion = 20427.914388 eV Total energy + Delta-G solvation = -3605.683843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76486 -39.83604 -38.68982 -36.09104 -35.66515 -33.89255 -32.50504 -31.54508 -30.61679 -27.23062 -25.52593 -25.38368 -23.10457 -22.13999 -21.23755 -19.90309 -19.56146 -18.18238 -17.34877 -17.09490 -16.40553 -16.30868 -15.97364 -15.43892 -15.19711 -15.10648 -14.30620 -14.13050 -13.52105 -13.30448 -12.86554 -12.80607 -12.62199 -12.41228 -12.33740 -11.99373 -11.64782 -11.48564 -11.37120 -11.22043 -11.13733 -10.94828 -10.85634 -10.77249 -10.48323 -10.39712 -10.14338 -9.94482 -9.36347 -9.30376 -8.71089 -8.44533 -6.21370 -4.23585 2.22468 2.85119 3.08243 3.14691 3.23485 3.26239 3.29157 3.92355 4.26492 4.47688 4.57505 4.71782 5.01550 5.08970 5.12203 5.23929 5.25458 5.36835 5.45953 5.49233 5.55901 5.68362 5.79783 5.87119 5.95071 6.02335 6.06435 6.21081 6.34994 6.40527 6.49073 6.70222 6.74482 6.77008 6.96586 7.12427 7.41527 7.93173 8.30989 8.67265 8.91479 9.35938 10.90964 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.005896 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.087267 B = 4747.901360 C = 5525.788086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.025 3.975 3 H 0.063 0.937 4 C -0.508 4.508 5 H 0.088 0.912 6 C 0.077 3.923 7 N -0.887 5.887 8 Si 0.868 3.132 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.262 1.262 12 C 0.460 3.540 13 O -0.497 6.497 14 O -0.369 6.369 15 C 0.035 3.965 16 C 0.078 3.922 17 H 0.108 0.892 18 C -0.138 4.138 19 C -0.126 4.126 20 C 0.043 3.957 21 N -0.507 5.507 22 C 0.040 3.960 23 C 0.479 3.521 24 O -0.506 6.506 25 O -0.516 6.516 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.268 0.732 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 5.654 16.631 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.006 3.994 3 H 0.081 0.919 4 C -0.545 4.545 5 H 0.106 0.894 6 C -0.126 4.126 7 N -0.523 5.523 8 Si 0.694 3.306 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.187 1.187 12 C 0.303 3.697 13 O -0.381 6.381 14 O -0.289 6.289 15 C -0.040 4.040 16 C -0.029 4.029 17 H 0.125 0.875 18 C -0.176 4.176 19 C -0.164 4.164 20 C -0.085 4.085 21 N -0.232 5.232 22 C -0.089 4.089 23 C 0.321 3.679 24 O -0.393 6.393 25 O -0.328 6.328 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.635 5.195 17.042 18.010 hybrid contribution 0.182 1.283 -0.707 1.476 sum -2.453 6.478 16.335 17.743 Atomic orbital electron populations 1.21928 0.95844 1.01522 0.99899 1.19183 0.94747 0.96954 0.88550 0.91891 1.20732 1.44335 0.96211 0.93214 0.89431 1.24992 0.94103 0.98256 0.95236 1.69866 1.44683 1.35984 1.01766 0.87000 0.79404 0.86294 0.77874 1.19681 1.20911 1.18671 1.25255 0.77274 0.83690 0.83491 1.90558 1.35068 1.25978 1.86527 1.86654 1.70988 1.55635 1.15582 1.23507 0.99555 0.96499 0.84411 1.22677 0.94770 0.89996 0.95469 0.87471 1.22880 0.94487 0.97654 1.02575 1.22704 0.97786 0.95318 1.00616 1.23149 0.89215 0.95297 1.00800 1.63465 1.16232 1.02295 1.41244 1.22191 0.97022 0.93574 0.96099 1.23466 0.77426 0.86680 0.80345 1.90676 1.64287 1.57354 1.26999 1.84578 1.51636 1.45717 1.50822 0.92336 0.92916 0.94523 0.92213 0.90660 0.90699 0.89609 0.90622 0.90817 0.90654 0.89432 0.93188 0.86504 0.87701 0.73319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.14 37.16 0.34 -2.27 16 2 C 0.03 0.57 2.40 -92.92 -0.22 0.35 16 3 H 0.06 1.39 5.29 -51.93 -0.27 1.11 16 4 C -0.51 -13.97 8.36 -34.44 -0.29 -14.26 16 5 H 0.09 2.73 7.62 -52.49 -0.40 2.33 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 8 Si 0.87 20.18 26.99 -169.99 -4.59 15.59 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.26 -5.64 6.82 56.52 0.39 -5.26 16 12 C 0.46 9.68 7.25 36.00 0.26 9.94 16 13 O -0.50 -11.97 15.52 -18.75 -0.29 -12.26 16 14 O -0.37 -6.11 6.26 -39.27 -0.25 -6.36 16 15 C 0.04 0.48 4.38 37.16 0.16 0.64 16 16 C 0.08 0.88 3.84 -66.73 -0.26 0.63 16 17 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.14 -1.42 6.38 -24.77 -0.16 -1.57 16 19 C -0.13 -1.23 7.08 -24.45 -0.17 -1.41 16 20 C 0.04 0.51 5.76 -2.30 -0.01 0.50 16 21 N -0.51 -6.41 4.86 -224.78 -1.09 -7.50 16 22 C 0.04 0.53 4.19 -4.98 -0.02 0.51 16 23 C 0.48 6.55 8.13 36.01 0.29 6.84 16 24 O -0.51 -7.84 15.82 -18.75 -0.30 -8.13 16 25 O -0.52 -6.14 13.42 -39.25 -0.53 -6.67 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.60 8.00 -51.93 -0.42 0.19 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.07 1.03 5.99 -51.93 -0.31 0.72 16 32 H 0.09 1.02 6.94 -51.93 -0.36 0.66 16 33 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 37 H 0.05 0.64 7.62 -51.92 -0.40 0.24 16 38 H 0.12 1.51 5.91 -51.93 -0.31 1.21 16 39 H 0.11 1.56 5.64 -51.93 -0.29 1.26 16 40 H 0.41 2.92 9.10 45.56 0.41 3.34 16 LS Contribution 325.03 15.07 4.90 4.90 Total: -1.00 -32.86 325.03 -6.38 -39.24 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.84 Total: 4.81 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.17 Total: 1.94 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: -0.32 Total: -33.06 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.36 Total: -33.42 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.59 Total: 15.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.86 -6.38 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.722 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds