Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47013 * 2 1 4 4 C 1.50704 * 109.46754 * 240.00302 * 2 1 3 5 5 H 1.08002 * 119.99794 * 275.14987 * 4 2 1 6 6 C 1.37880 * 120.00050 * 95.14828 * 4 2 1 7 7 N 1.31515 * 119.99880 * 184.72508 * 6 4 2 8 8 Si 1.86797 * 119.99698 * 4.73151 * 6 4 2 9 9 H 1.48501 * 109.47594 * 84.87977 * 8 6 4 10 10 H 1.48506 * 109.46903 * 204.87786 * 8 6 4 11 11 H 1.48500 * 109.47276 * 324.87693 * 8 6 4 12 12 C 1.50695 * 109.47458 * 120.00742 * 2 1 3 13 13 O 1.20821 * 120.00592 * 119.99754 * 12 2 1 14 14 O 1.34233 * 119.99683 * 299.99874 * 12 2 1 15 15 C 1.45202 * 116.99895 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47074 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.88323 * 173.81103 * 16 15 14 18 18 C 1.54319 * 109.88820 * 52.78195 * 16 15 14 19 19 C 1.55396 * 102.90182 * 218.40456 * 18 16 15 20 20 C 1.54908 * 101.73879 * 35.48283 * 19 18 16 21 21 N 1.47442 * 109.89269 * 294.84768 * 16 15 14 22 22 C 1.46899 * 110.99749 * 356.14800 * 21 16 15 23 23 C 1.50699 * 109.47440 * 190.27663 * 22 21 16 24 24 O 1.20826 * 119.99693 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00473 * 179.97438 * 23 22 21 26 26 H 1.08994 * 109.47144 * 55.18411 * 1 2 3 27 27 H 1.08997 * 109.47021 * 175.19087 * 1 2 3 28 28 H 1.09000 * 109.46435 * 295.17995 * 1 2 3 29 29 H 0.97001 * 119.99643 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47523 * 299.99669 * 15 14 12 31 31 H 1.08997 * 109.47270 * 59.99955 * 15 14 12 32 32 H 1.08999 * 110.70982 * 336.69784 * 18 16 15 33 33 H 1.09009 * 110.70390 * 99.92656 * 18 16 15 34 34 H 1.08994 * 110.87468 * 277.39441 * 19 18 16 35 35 H 1.09002 * 111.02350 * 153.63431 * 19 18 16 36 36 H 1.09001 * 110.37410 * 204.18672 * 20 19 18 37 37 H 1.09007 * 110.46433 * 81.89559 * 20 19 18 38 38 H 1.09001 * 109.47088 * 310.27707 * 22 21 16 39 39 H 1.09002 * 109.47303 * 70.27419 * 22 21 16 40 40 H 0.96699 * 117.00305 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1331 -1.7857 -1.2300 6 6 2.3631 0.0125 -2.3571 7 7 2.7123 -0.6125 -3.4603 8 14 2.3153 1.8794 -2.3163 9 1 3.5995 2.3959 -1.7784 10 1 2.1101 2.3995 -3.6921 11 1 1.1983 2.3271 -1.4461 12 6 2.0324 -0.7105 1.2303 13 8 2.7270 -1.6929 1.1194 14 8 1.7082 -0.2520 2.4495 15 6 2.2279 -0.9860 3.5895 16 6 1.7568 -0.3189 4.8833 17 1 2.0502 -0.9245 5.7408 18 6 0.2229 -0.1514 4.8593 19 6 0.0149 1.2359 5.5278 20 6 1.2489 2.0204 5.0165 21 7 2.3450 1.0284 4.9960 22 6 3.2729 1.2921 3.8882 23 6 4.0395 2.5595 4.1657 24 8 3.8342 3.1793 5.1824 25 8 4.9510 2.9993 3.2841 26 1 -0.3633 0.5867 -0.8437 27 1 -0.3633 -1.0240 -0.0862 28 1 -0.3632 0.4372 0.9300 29 1 2.9454 -0.1039 -4.2528 30 1 1.8645 -2.0131 3.5567 31 1 3.3173 -0.9849 3.5564 32 1 -0.1480 -0.1444 3.8344 33 1 -0.2598 -0.9379 5.4395 34 1 0.0297 1.1496 6.6142 35 1 -0.9110 1.6993 5.1870 36 1 1.4886 2.8367 5.6978 37 1 1.0668 2.4055 4.0131 38 1 3.9699 0.4595 3.7921 39 1 2.7101 1.4034 2.9614 40 1 5.4177 3.8167 3.5059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -188.841531 kcal Electronic energy + Delta-G solvation = -24034.633616 eV Core-core repulsion = 20427.914388 eV Total energy + Delta-G solvation = -3606.719228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94792 -41.13773 -39.84636 -37.29866 -36.98190 -35.80198 -33.51257 -33.39063 -31.70374 -28.19982 -27.32153 -26.65058 -24.70201 -23.11418 -22.17160 -21.47828 -20.63652 -19.27093 -19.22516 -18.30304 -17.95507 -17.66460 -17.03267 -16.78208 -16.47092 -16.19162 -15.88873 -15.41051 -14.72115 -14.62650 -14.27113 -14.19842 -14.09870 -13.77593 -13.45501 -13.14914 -12.99669 -12.88088 -12.65801 -12.60198 -12.45845 -12.26150 -11.99694 -11.94706 -11.81060 -11.62695 -11.53907 -11.37982 -11.28818 -11.05071 -10.78996 -9.44360 -8.33388 -6.42303 1.16023 1.33602 1.36963 1.43165 1.48918 1.79440 1.92245 2.30927 2.95781 3.04222 3.50029 3.70748 3.78722 3.98382 4.14806 4.19615 4.26663 4.31805 4.33204 4.41022 4.48147 4.56372 4.63744 4.67417 4.80768 4.96079 5.04963 5.07277 5.10332 5.16472 5.37400 5.40828 5.48852 5.53423 5.58079 5.78310 5.85233 6.19693 6.67070 7.00169 7.02884 7.22206 8.83420 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.005896 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.087267 B = 4747.901360 C = 5525.788086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.019 3.981 3 H 0.077 0.923 4 C -0.516 4.516 5 H 0.031 0.969 6 C 0.017 3.983 7 N -0.941 5.941 8 Si 0.936 3.064 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.227 1.227 12 C 0.470 3.530 13 O -0.537 6.537 14 O -0.352 6.352 15 C 0.031 3.969 16 C 0.083 3.917 17 H 0.132 0.868 18 C -0.135 4.135 19 C -0.117 4.117 20 C 0.040 3.960 21 N -0.512 5.512 22 C 0.039 3.961 23 C 0.484 3.516 24 O -0.527 6.527 25 O -0.518 6.518 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.270 0.730 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 7.581 18.817 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.001 4.001 3 H 0.094 0.906 4 C -0.554 4.554 5 H 0.050 0.950 6 C -0.181 4.181 7 N -0.580 5.580 8 Si 0.757 3.243 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.150 1.150 12 C 0.314 3.686 13 O -0.425 6.425 14 O -0.270 6.270 15 C -0.043 4.043 16 C -0.024 4.024 17 H 0.149 0.851 18 C -0.174 4.174 19 C -0.155 4.155 20 C -0.087 4.087 21 N -0.238 5.238 22 C -0.090 4.090 23 C 0.327 3.673 24 O -0.416 6.416 25 O -0.332 6.332 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -3.847 7.143 19.266 20.904 hybrid contribution 0.606 0.602 -1.304 1.559 sum -3.241 7.745 17.961 19.827 Atomic orbital electron populations 1.21816 0.93105 1.01556 1.01990 1.19140 0.96774 0.96877 0.87304 0.90552 1.20822 1.44624 0.94077 0.95881 0.95024 1.25947 0.93511 1.04214 0.94411 1.70034 1.46667 1.38452 1.02831 0.85917 0.80782 0.78923 0.78651 1.19033 1.20709 1.14955 1.24742 0.76389 0.82748 0.84681 1.90553 1.36901 1.27709 1.87352 1.86605 1.70309 1.55225 1.14845 1.23832 0.99660 0.96851 0.83989 1.22839 0.95620 0.89435 0.94479 0.85064 1.22885 0.93497 0.98793 1.02197 1.22691 0.97117 0.94447 1.01254 1.23158 0.90081 0.95312 1.00176 1.63520 1.16539 1.03007 1.40716 1.22171 0.97216 0.93787 0.95812 1.23434 0.77377 0.86451 0.80071 1.90668 1.65079 1.57974 1.27875 1.84537 1.51322 1.47008 1.50339 0.92015 0.93763 0.90833 0.92070 0.90241 0.90857 0.91113 0.88340 0.89611 0.89438 0.90356 0.94119 0.86329 0.88995 0.70997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.14 71.98 0.66 -4.02 16 2 C 0.02 0.82 2.40 -12.29 -0.03 0.79 16 3 H 0.08 3.18 5.29 -2.39 -0.01 3.16 16 4 C -0.52 -29.25 8.36 25.60 0.21 -29.04 16 5 H 0.03 2.09 7.62 -2.91 -0.02 2.07 16 6 C 0.02 0.99 5.47 84.66 0.46 1.45 16 7 N -0.94 -57.91 13.96 21.45 0.30 -57.61 16 8 Si 0.94 40.86 26.99 68.60 1.85 42.71 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.23 -8.57 6.82 99.48 0.68 -7.89 16 12 C 0.47 19.57 7.25 71.23 0.52 20.08 16 13 O -0.54 -26.45 15.52 21.98 0.34 -26.11 16 14 O -0.35 -11.06 6.26 -51.45 -0.32 -11.38 16 15 C 0.03 0.79 4.38 71.98 0.31 1.11 16 16 C 0.08 1.64 3.84 45.26 0.17 1.81 16 17 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.14 -2.32 6.38 31.87 0.20 -2.11 16 19 C -0.12 -1.89 7.08 32.07 0.23 -1.66 16 20 C 0.04 0.87 5.76 86.77 0.50 1.37 16 21 N -0.51 -11.80 4.86 -865.07 -4.20 -16.01 16 22 C 0.04 0.98 4.19 85.56 0.36 1.34 16 23 C 0.48 12.48 8.13 71.24 0.58 13.06 16 24 O -0.53 -15.56 15.82 21.96 0.35 -15.21 16 25 O -0.52 -11.39 13.42 -51.40 -0.69 -12.08 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.08 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.07 1.93 5.99 -2.39 -0.01 1.91 16 32 H 0.07 1.45 6.94 -2.39 -0.02 1.44 16 33 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.85 7.40 -2.39 -0.02 1.84 16 37 H 0.04 0.95 7.62 -2.38 -0.02 0.93 16 38 H 0.12 2.93 5.91 -2.39 -0.01 2.91 16 39 H 0.09 2.58 5.64 -2.39 -0.01 2.56 16 40 H 0.43 5.27 9.10 -74.06 -0.67 4.59 16 Total: -1.00 -73.86 325.03 2.17 -71.70 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.36 Total: 19.80 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 4.18 Total: 4.18 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -3.90 Total: -73.62 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -0.32 Total: -64.78 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.85 Total: 42.71 kcal Total: -73.86 2.17 -71.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.145 kcal (2) G-P(sol) polarization free energy of solvation -73.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds