Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.50693 * 109.47588 * 239.99865 * 2 1 3 5 5 H 1.07999 * 120.00010 * 274.99946 * 4 2 1 6 6 C 1.37879 * 119.99720 * 94.99969 * 4 2 1 7 7 N 1.31523 * 119.99715 * 184.91802 * 6 4 2 8 8 Si 1.86794 * 120.00266 * 4.91938 * 6 4 2 9 9 H 1.48495 * 109.47288 * 84.82870 * 8 6 4 10 10 H 1.48498 * 109.47051 * 204.83383 * 8 6 4 11 11 H 1.48500 * 109.47160 * 324.82797 * 8 6 4 12 12 N 1.46504 * 109.46987 * 119.99450 * 2 1 3 13 13 C 1.34768 * 120.00327 * 275.00610 * 12 2 1 14 14 O 1.21285 * 120.00316 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00239 * 179.97438 * 13 12 2 16 16 H 1.08997 * 110.45881 * 300.70289 * 15 13 12 17 17 C 1.54485 * 110.50820 * 63.30660 * 15 13 12 18 18 O 1.44785 * 104.62675 * 94.70765 * 17 15 13 19 19 C 1.44422 * 105.29863 * 40.53178 * 18 17 15 20 20 H 1.08999 * 110.37211 * 78.28759 * 19 18 17 21 21 C 1.53003 * 110.37072 * 200.62327 * 19 18 17 22 22 C 1.52998 * 109.46884 * 290.37995 * 21 19 18 23 23 C 1.50701 * 109.47206 * 179.97438 * 22 21 19 24 24 O 1.20829 * 119.99658 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00588 * 180.02562 * 23 22 21 26 26 C 1.54483 * 104.80316 * 319.45541 * 19 18 17 27 27 H 1.09009 * 109.46710 * 175.03373 * 1 2 3 28 28 H 1.08993 * 109.47701 * 295.03304 * 1 2 3 29 29 H 1.09001 * 109.47045 * 55.04016 * 1 2 3 30 30 H 0.96995 * 119.99936 * 180.02562 * 7 6 4 31 31 H 0.97003 * 119.99276 * 95.00451 * 12 2 1 32 32 H 1.09008 * 110.36339 * 213.49780 * 17 15 13 33 33 H 1.08991 * 110.37392 * 335.83277 * 17 15 13 34 34 H 1.08995 * 109.47212 * 50.38228 * 21 19 18 35 35 H 1.08993 * 109.46896 * 170.38558 * 21 19 18 36 36 H 1.08998 * 109.47836 * 300.00367 * 22 21 19 37 37 H 1.09000 * 109.47274 * 60.00451 * 22 21 19 38 38 H 0.96696 * 117.00293 * 180.02562 * 25 23 22 39 39 H 1.09000 * 110.50416 * 265.32999 * 26 19 18 40 40 H 1.09006 * 110.62362 * 142.68165 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1356 -1.7854 -1.2289 6 6 2.3604 0.0122 -2.3579 7 7 2.7061 -0.6131 -3.4621 8 14 2.3137 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3991 -3.6927 11 1 1.1986 2.3275 -1.4450 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8589 1.1587 2.4116 15 6 2.6487 -0.7286 3.5878 16 1 1.9935 -1.5623 3.8402 17 6 4.0966 -1.2234 3.3747 18 8 4.9266 -0.1751 3.9301 19 6 4.2564 0.2408 5.1399 20 1 4.4452 -0.4721 5.9426 21 6 4.7178 1.6408 5.5499 22 6 6.1707 1.5801 6.0254 23 6 6.6254 2.9591 6.4287 24 8 5.8651 3.8945 6.3448 25 8 7.8749 3.1484 6.8810 26 6 2.7554 0.2546 4.7749 27 1 -0.3633 -1.0239 -0.0890 28 1 -0.3634 0.4348 0.9310 29 1 -0.3633 0.5889 -0.8422 30 1 2.9372 -0.1048 -4.2553 31 1 2.2490 -1.6317 1.1527 32 1 4.2596 -2.1603 3.9075 33 1 4.3018 -1.3497 2.3117 34 1 4.6430 2.3129 4.6951 35 1 4.0862 2.0093 6.3582 36 1 6.2456 0.9080 6.8802 37 1 6.8024 1.2116 5.2172 38 1 8.1205 4.0505 7.1279 39 1 2.4454 1.2546 4.4717 40 1 2.1530 -0.0931 5.6142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = -192.615655 kcal Electronic energy + Delta-G solvation = -22794.232895 eV Core-core repulsion = 19187.350008 eV Total energy + Delta-G solvation = -3606.882886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.53801 -40.06571 -38.19671 -36.41498 -34.92187 -33.91394 -32.47748 -32.05717 -29.99650 -28.68444 -25.33480 -25.01383 -23.46338 -21.67900 -20.84654 -20.36802 -19.45797 -18.30198 -17.45734 -16.95594 -16.63569 -16.33399 -15.95623 -15.63146 -15.38196 -14.78766 -14.06458 -13.94430 -13.65151 -13.48172 -13.17569 -12.85785 -12.53192 -12.48181 -12.01774 -11.79865 -11.73279 -11.59153 -11.41834 -11.26038 -11.09274 -11.00699 -10.88577 -10.81398 -10.71480 -10.57384 -9.91757 -9.83530 -9.21556 -9.09637 -8.70296 -8.10927 -6.24399 -4.28273 2.00424 2.81322 3.19014 3.28050 3.34962 3.42499 3.84131 3.90895 4.32652 4.47287 4.52030 4.80853 4.83565 4.92542 5.00864 5.11122 5.19427 5.28078 5.35613 5.45484 5.52231 5.63859 5.74788 5.81926 5.87250 6.04126 6.25128 6.30251 6.33146 6.50831 6.66757 6.77796 6.93265 7.17402 7.36837 7.54469 7.66643 8.12083 8.55178 8.75648 8.95927 9.37908 10.87240 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.003841 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.709042 B = 7288.469157 C = 7876.043352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.703 5.703 13 C 0.509 3.491 14 O -0.553 6.553 15 C -0.148 4.148 16 H 0.106 0.894 17 C 0.056 3.944 18 O -0.366 6.366 19 C 0.076 3.924 20 H 0.071 0.929 21 C -0.104 4.104 22 C -0.112 4.112 23 C 0.477 3.523 24 O -0.515 6.515 25 O -0.520 6.520 26 C -0.142 4.142 27 H 0.047 0.953 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.268 0.732 31 H 0.392 0.608 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.408 0.592 39 H 0.104 0.896 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 -0.604 20.633 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.351 5.351 13 C 0.294 3.706 14 O -0.432 6.432 15 C -0.170 4.170 16 H 0.124 0.876 17 C -0.021 4.021 18 O -0.285 6.285 19 C 0.018 3.982 20 H 0.089 0.911 21 C -0.141 4.141 22 C -0.149 4.149 23 C 0.320 3.680 24 O -0.403 6.403 25 O -0.332 6.332 26 C -0.179 4.179 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.267 0.733 39 H 0.122 0.878 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.575 0.203 20.200 20.956 hybrid contribution 0.087 0.898 0.031 0.903 sum 5.662 1.101 20.231 21.037 Atomic orbital electron populations 1.22217 0.98635 1.00528 0.99227 1.19130 0.90872 0.94380 0.82788 0.93225 1.20999 1.45336 0.95594 0.94967 0.90330 1.24938 0.93556 0.98638 0.95153 1.69882 1.44688 1.36211 1.01698 0.86896 0.79877 0.85830 0.77325 1.19791 1.21173 1.18528 1.46611 1.64879 1.13776 1.09835 1.20193 0.78264 0.87448 0.84704 1.90621 1.51590 1.16102 1.84871 1.22720 0.98967 0.99833 0.95460 0.87566 1.23480 0.87105 0.90658 1.00864 1.89217 1.46650 1.54312 1.38365 1.22995 0.91534 0.95373 0.88267 0.91146 1.21519 0.93396 0.96300 1.02916 1.21393 0.98835 0.90678 1.04005 1.23671 0.78916 0.92515 0.72906 1.90749 1.54735 1.44373 1.50422 1.84546 1.32863 1.38761 1.77074 1.23000 0.95890 1.02565 0.96486 0.93432 0.95283 0.92921 0.92224 0.77436 0.91325 0.87996 0.89502 0.89616 0.87724 0.86817 0.73301 0.87798 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.47 37.16 0.35 -2.87 16 2 C 0.23 5.48 2.22 -69.08 -0.15 5.32 16 3 H 0.05 1.30 4.73 -51.93 -0.25 1.06 16 4 C -0.53 -14.18 9.05 -34.44 -0.31 -14.49 16 5 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16 8 Si 0.87 21.84 26.99 -169.99 -4.59 17.25 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.44 6.82 56.52 0.39 -6.06 16 12 N -0.70 -13.80 4.81 -54.93 -0.26 -14.07 16 13 C 0.51 9.56 7.07 -10.99 -0.08 9.48 16 14 O -0.55 -12.56 14.95 5.55 0.08 -12.48 16 15 C -0.15 -1.95 3.50 -90.20 -0.32 -2.27 16 16 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 17 C 0.06 0.69 7.19 37.94 0.27 0.96 16 18 O -0.37 -5.05 11.14 -35.23 -0.39 -5.45 16 19 C 0.08 0.83 3.25 -25.95 -0.08 0.75 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 21 C -0.10 -1.14 4.13 -26.73 -0.11 -1.25 16 22 C -0.11 -1.00 5.75 -27.88 -0.16 -1.16 16 23 C 0.48 4.96 8.33 36.01 0.30 5.26 16 24 O -0.51 -7.19 16.74 -18.75 -0.31 -7.50 16 25 O -0.52 -4.12 13.42 -39.25 -0.53 -4.64 16 26 C -0.14 -1.73 6.21 -25.16 -0.16 -1.89 16 27 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 6.64 8.52 -40.82 -0.35 6.29 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.10 1.38 7.59 -51.93 -0.39 0.99 16 34 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 1.04 8.01 -51.93 -0.42 0.62 16 38 H 0.41 1.60 9.10 45.56 0.41 2.01 16 39 H 0.10 1.59 6.23 -51.93 -0.32 1.27 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -35.02 336.55 -5.81 -40.83 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.11 Total: 6.29 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.54 Total: 0.03 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.51 Total: -39.41 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.15 Total: -30.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.02 -5.81 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.782 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds