Wall clock time and date at job start Tue Mar 31 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.50693 * 109.47588 * 239.99865 * 2 1 3 5 5 H 1.07999 * 120.00010 * 274.99946 * 4 2 1 6 6 C 1.37879 * 119.99720 * 94.99969 * 4 2 1 7 7 N 1.31523 * 119.99715 * 184.91802 * 6 4 2 8 8 Si 1.86794 * 120.00266 * 4.91938 * 6 4 2 9 9 H 1.48495 * 109.47288 * 84.82870 * 8 6 4 10 10 H 1.48498 * 109.47051 * 204.83383 * 8 6 4 11 11 H 1.48500 * 109.47160 * 324.82797 * 8 6 4 12 12 N 1.46504 * 109.46987 * 119.99450 * 2 1 3 13 13 C 1.34768 * 120.00327 * 275.00610 * 12 2 1 14 14 O 1.21285 * 120.00316 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00239 * 179.97438 * 13 12 2 16 16 H 1.08997 * 110.45881 * 300.70289 * 15 13 12 17 17 C 1.54485 * 110.50820 * 63.30660 * 15 13 12 18 18 O 1.44785 * 104.62675 * 94.70765 * 17 15 13 19 19 C 1.44422 * 105.29863 * 40.53178 * 18 17 15 20 20 H 1.08999 * 110.37211 * 78.28759 * 19 18 17 21 21 C 1.53003 * 110.37072 * 200.62327 * 19 18 17 22 22 C 1.52998 * 109.46884 * 290.37995 * 21 19 18 23 23 C 1.50701 * 109.47206 * 179.97438 * 22 21 19 24 24 O 1.20829 * 119.99658 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00588 * 180.02562 * 23 22 21 26 26 C 1.54483 * 104.80316 * 319.45541 * 19 18 17 27 27 H 1.09009 * 109.46710 * 175.03373 * 1 2 3 28 28 H 1.08993 * 109.47701 * 295.03304 * 1 2 3 29 29 H 1.09001 * 109.47045 * 55.04016 * 1 2 3 30 30 H 0.96995 * 119.99936 * 180.02562 * 7 6 4 31 31 H 0.97003 * 119.99276 * 95.00451 * 12 2 1 32 32 H 1.09008 * 110.36339 * 213.49780 * 17 15 13 33 33 H 1.08991 * 110.37392 * 335.83277 * 17 15 13 34 34 H 1.08995 * 109.47212 * 50.38228 * 21 19 18 35 35 H 1.08993 * 109.46896 * 170.38558 * 21 19 18 36 36 H 1.08998 * 109.47836 * 300.00367 * 22 21 19 37 37 H 1.09000 * 109.47274 * 60.00451 * 22 21 19 38 38 H 0.96696 * 117.00293 * 180.02562 * 25 23 22 39 39 H 1.09000 * 110.50416 * 265.32999 * 26 19 18 40 40 H 1.09006 * 110.62362 * 142.68165 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1356 -1.7854 -1.2289 6 6 2.3604 0.0122 -2.3579 7 7 2.7061 -0.6131 -3.4621 8 14 2.3137 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3991 -3.6927 11 1 1.1986 2.3275 -1.4450 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8589 1.1587 2.4116 15 6 2.6487 -0.7286 3.5878 16 1 1.9935 -1.5623 3.8402 17 6 4.0966 -1.2234 3.3747 18 8 4.9266 -0.1751 3.9301 19 6 4.2564 0.2408 5.1399 20 1 4.4452 -0.4721 5.9426 21 6 4.7178 1.6408 5.5499 22 6 6.1707 1.5801 6.0254 23 6 6.6254 2.9591 6.4287 24 8 5.8651 3.8945 6.3448 25 8 7.8749 3.1484 6.8810 26 6 2.7554 0.2546 4.7749 27 1 -0.3633 -1.0239 -0.0890 28 1 -0.3634 0.4348 0.9310 29 1 -0.3633 0.5889 -0.8422 30 1 2.9372 -0.1048 -4.2553 31 1 2.2490 -1.6317 1.1527 32 1 4.2596 -2.1603 3.9075 33 1 4.3018 -1.3497 2.3117 34 1 4.6430 2.3129 4.6951 35 1 4.0862 2.0093 6.3582 36 1 6.2456 0.9080 6.8802 37 1 6.8024 1.2116 5.2172 38 1 8.1205 4.0505 7.1279 39 1 2.4454 1.2546 4.4717 40 1 2.1530 -0.0931 5.6142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:01 Heat of formation + Delta-G solvation = -220.161527 kcal Electronic energy + Delta-G solvation = -22795.427373 eV Core-core repulsion = 19187.350008 eV Total energy + Delta-G solvation = -3608.077365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48663 -41.13209 -39.50488 -37.17894 -36.72968 -34.79859 -34.36882 -33.29842 -31.53085 -29.72780 -27.35289 -25.88236 -24.74187 -22.72099 -21.88788 -21.65150 -21.01261 -19.24903 -19.04268 -17.90647 -17.80160 -17.38518 -17.26520 -16.95622 -16.41392 -16.20498 -15.51575 -15.49424 -14.80505 -14.55423 -14.41469 -14.35795 -14.27077 -13.73077 -13.30463 -13.16726 -12.92734 -12.78590 -12.63250 -12.57823 -12.48655 -12.37173 -12.16674 -11.93365 -11.90763 -11.82093 -11.57082 -11.25548 -10.95959 -10.83943 -10.46931 -9.81216 -8.41642 -6.46735 1.21214 1.25143 1.30472 1.40491 1.76199 2.15127 2.23828 2.44801 2.93699 3.01287 3.48885 3.70583 3.87551 4.01849 4.09410 4.11498 4.30312 4.43550 4.47314 4.52662 4.63963 4.68606 4.71944 4.76198 4.80833 4.82433 4.96091 5.01635 5.09828 5.13488 5.31852 5.36947 5.43748 5.62828 5.75245 5.91394 6.11382 6.58308 6.90866 6.99067 7.19584 7.47986 8.73263 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.003841 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.709042 B = 7288.469157 C = 7876.043352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.233 3.767 3 H 0.023 0.977 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.036 3.964 7 N -0.927 5.927 8 Si 0.922 3.078 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.260 1.260 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.598 6.598 15 C -0.139 4.139 16 H 0.147 0.853 17 C 0.056 3.944 18 O -0.395 6.395 19 C 0.079 3.921 20 H 0.115 0.885 21 C -0.103 4.103 22 C -0.106 4.106 23 C 0.481 3.519 24 O -0.560 6.560 25 O -0.513 6.513 26 C -0.144 4.144 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.271 0.729 31 H 0.407 0.593 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.426 0.574 39 H 0.065 0.935 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 -2.023 23.291 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.129 3.871 3 H 0.041 0.959 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.165 4.165 7 N -0.566 5.566 8 Si 0.748 3.252 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.184 1.184 12 N -0.351 5.351 13 C 0.290 3.710 14 O -0.480 6.480 15 C -0.160 4.160 16 H 0.165 0.835 17 C -0.021 4.021 18 O -0.315 6.315 19 C 0.022 3.978 20 H 0.133 0.867 21 C -0.141 4.141 22 C -0.143 4.143 23 C 0.326 3.674 24 O -0.451 6.451 25 O -0.327 6.327 26 C -0.182 4.182 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.287 0.713 39 H 0.083 0.917 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.939 -1.239 22.881 23.671 hybrid contribution 0.025 1.327 -0.724 1.512 sum 5.964 0.089 22.157 22.945 Atomic orbital electron populations 1.22098 0.97064 1.01379 0.99328 1.18865 0.92013 0.92917 0.83352 0.95876 1.21195 1.44147 0.94946 0.95953 0.92030 1.25537 0.93905 1.01880 0.95138 1.69963 1.46666 1.37540 1.02407 0.86132 0.79391 0.82080 0.77640 1.20535 1.20015 1.18392 1.46341 1.65125 1.14416 1.09224 1.21207 0.76944 0.87066 0.85780 1.90608 1.53283 1.18346 1.85750 1.22796 1.00225 1.00584 0.92412 0.83541 1.23616 0.85889 0.92048 1.00533 1.89197 1.47368 1.55121 1.39799 1.23195 0.90191 0.95960 0.88422 0.86705 1.21463 0.95270 0.95879 1.01465 1.21410 0.97156 0.90472 1.05305 1.23972 0.79005 0.92584 0.71877 1.90740 1.56063 1.45821 1.52512 1.84508 1.31467 1.40348 1.76364 1.23056 0.97582 1.00306 0.97213 0.92009 0.94508 0.93640 0.92009 0.75767 0.86763 0.90080 0.93883 0.88914 0.83969 0.86883 0.71305 0.91675 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.03 9.47 71.98 0.68 -5.35 16 2 C 0.23 11.06 2.22 44.24 0.10 11.16 16 3 H 0.02 1.24 4.73 -2.39 -0.01 1.23 16 4 C -0.52 -28.25 9.05 25.60 0.23 -28.01 16 5 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 6 C 0.04 2.04 5.47 84.65 0.46 2.51 16 7 N -0.93 -55.28 13.96 21.45 0.30 -54.98 16 8 Si 0.92 45.75 26.99 68.60 1.85 47.61 16 9 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 10 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.26 -12.70 6.82 99.48 0.68 -12.03 16 12 N -0.70 -27.10 4.81 -446.10 -2.14 -29.24 16 13 C 0.50 18.49 7.07 87.66 0.62 19.11 16 14 O -0.60 -27.61 14.95 -3.05 -0.05 -27.65 16 15 C -0.14 -3.27 3.50 -10.52 -0.04 -3.30 16 16 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 17 C 0.06 1.21 7.19 72.49 0.52 1.73 16 18 O -0.40 -10.06 11.14 -148.98 -1.66 -11.72 16 19 C 0.08 1.50 3.25 31.10 0.10 1.60 16 20 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 21 C -0.10 -2.16 4.13 30.59 0.13 -2.03 16 22 C -0.11 -1.67 5.75 29.85 0.17 -1.50 16 23 C 0.48 9.48 8.33 71.24 0.59 10.08 16 24 O -0.56 -15.78 16.74 21.95 0.37 -15.42 16 25 O -0.51 -7.18 13.42 -51.39 -0.69 -7.87 16 26 C -0.14 -3.16 6.21 31.61 0.20 -2.96 16 27 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.41 13.28 8.52 -92.71 -0.79 12.49 16 32 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 2.08 7.59 -2.39 -0.02 2.06 16 34 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.85 8.01 -2.39 -0.02 1.83 16 38 H 0.43 2.66 9.10 -74.06 -0.67 1.98 16 39 H 0.06 1.99 6.23 -2.39 -0.01 1.98 16 40 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -79.18 336.55 1.32 -77.85 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.42 Total: 18.40 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 3.77 Total: 3.01 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -1.85 Total: -84.22 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -2.03 Total: -62.66 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.85 Total: 47.61 kcal Total: -79.18 1.32 -77.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.307 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds