Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50701 * 109.47146 * 240.00333 * 2 1 3 5 5 H 1.07999 * 120.00073 * 240.00334 * 4 2 1 6 6 C 1.37871 * 119.99975 * 59.99519 * 4 2 1 7 7 N 1.31517 * 120.00458 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99866 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47240 * 90.00033 * 8 6 4 10 10 H 1.48500 * 109.47071 * 210.00173 * 8 6 4 11 11 H 1.48498 * 109.46900 * 330.00248 * 8 6 4 12 12 N 1.46496 * 109.47274 * 119.99861 * 2 1 3 13 13 C 1.34772 * 120.00268 * 275.00199 * 12 2 1 14 14 O 1.21279 * 120.00032 * 359.97438 * 13 12 2 15 15 C 1.50706 * 120.00208 * 180.02562 * 13 12 2 16 16 H 1.08992 * 110.74983 * 62.01470 * 15 13 12 17 17 C 1.54382 * 110.84516 * 298.54252 * 15 13 12 18 18 O 1.43236 * 107.59235 * 220.45306 * 17 15 13 19 19 C 1.43645 * 109.96643 * 358.28861 * 18 17 15 20 20 H 1.09000 * 110.31117 * 265.41448 * 19 18 17 21 21 C 1.53007 * 110.30705 * 143.34563 * 19 18 17 22 22 C 1.52994 * 109.47225 * 66.45418 * 21 19 18 23 23 C 1.50696 * 109.47009 * 180.02562 * 22 21 19 24 24 O 1.20826 * 119.99969 * 359.97438 * 23 22 21 25 25 O 1.34228 * 120.00087 * 179.97438 * 23 22 21 26 26 C 1.54944 * 105.14053 * 24.43094 * 19 18 17 27 27 H 1.09002 * 109.47321 * 59.99993 * 1 2 3 28 28 H 1.08998 * 109.46851 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47143 * 300.00085 * 1 2 3 30 30 H 0.96993 * 120.00506 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99879 * 94.99733 * 12 2 1 32 32 H 1.09000 * 109.83241 * 339.97226 * 17 15 13 33 33 H 1.09004 * 109.82801 * 100.94068 * 17 15 13 34 34 H 1.08998 * 109.46790 * 186.45263 * 21 19 18 35 35 H 1.09002 * 109.46544 * 306.45211 * 21 19 18 36 36 H 1.09002 * 109.47013 * 300.00150 * 22 21 19 37 37 H 1.08995 * 109.47373 * 59.99527 * 22 21 19 38 38 H 0.96705 * 117.00323 * 179.97438 * 25 23 22 39 39 H 1.08996 * 111.13007 * 205.63663 * 26 19 18 40 40 H 1.08996 * 111.12728 * 81.46676 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6500 -0.7285 3.5875 16 1 3.6635 -1.0984 3.4326 17 6 1.7000 -1.8787 3.9847 18 8 1.5864 -1.8729 5.4125 19 6 2.4163 -0.8394 5.9664 20 1 3.3866 -1.2457 6.2519 21 6 1.7320 -0.2005 7.1766 22 6 1.6291 -1.2279 8.3056 23 6 0.9547 -0.5988 9.4973 24 8 0.5938 0.5533 9.4488 25 8 0.7548 -1.3183 10.6127 26 6 2.5798 0.2009 4.8298 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7094 1.1619 -3.4843 31 1 2.2490 -1.6317 1.1526 32 1 0.7197 -1.7207 3.5351 33 1 2.1122 -2.8309 3.6505 34 1 2.3174 0.6543 7.5155 35 1 0.7327 0.1319 6.8955 36 1 1.0438 -2.0827 7.9666 37 1 2.6283 -1.5603 8.5866 38 1 0.3185 -0.8715 11.3511 39 1 3.5021 0.7697 4.9474 40 1 1.7159 0.8634 4.7763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = -219.837295 kcal Electronic energy + Delta-G solvation = -22396.516448 eV Core-core repulsion = 18788.453143 eV Total energy + Delta-G solvation = -3608.063305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45498 -41.09538 -39.61993 -37.14893 -36.74187 -34.79747 -34.32237 -33.29589 -31.00910 -29.72263 -27.35366 -25.89045 -24.71196 -22.70087 -22.21979 -21.63478 -20.84838 -19.11724 -18.77660 -18.18387 -17.69913 -17.26138 -17.19277 -16.93397 -16.44792 -15.91693 -15.66598 -15.29389 -14.68027 -14.49785 -14.39190 -14.29544 -14.09280 -13.76772 -13.18432 -13.03639 -12.87689 -12.81716 -12.70588 -12.54657 -12.42997 -12.29969 -12.15666 -12.10332 -11.94373 -11.84614 -11.56087 -11.11465 -10.80168 -10.60686 -10.40520 -9.78036 -8.18043 -6.35937 1.24730 1.45487 1.46107 1.56716 1.74793 2.17384 2.33561 2.54166 2.83456 3.12512 3.33583 3.70837 3.86960 3.95592 4.08964 4.10685 4.28885 4.31949 4.48304 4.62718 4.73007 4.76202 4.77880 4.82650 4.89931 4.92475 5.06222 5.08006 5.13617 5.29186 5.42099 5.59925 5.66225 5.66907 5.88728 5.99721 6.08598 6.72251 6.93396 7.02238 7.31708 7.53186 8.88340 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.046268 B = 0.002740 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.024942 B =10216.503276 C =10400.487936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.599 6.599 15 C -0.137 4.137 16 H 0.142 0.858 17 C 0.069 3.931 18 O -0.385 6.385 19 C 0.088 3.912 20 H 0.113 0.887 21 C -0.107 4.107 22 C -0.105 4.105 23 C 0.481 3.519 24 O -0.560 6.560 25 O -0.514 6.514 26 C -0.133 4.133 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.009 0.991 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.425 0.575 39 H 0.101 0.899 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 -10.053 21.433 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.351 5.351 13 C 0.293 3.707 14 O -0.481 6.481 15 C -0.158 4.158 16 H 0.160 0.840 17 C -0.008 4.008 18 O -0.305 6.305 19 C 0.032 3.968 20 H 0.130 0.870 21 C -0.145 4.145 22 C -0.143 4.143 23 C 0.326 3.674 24 O -0.451 6.451 25 O -0.328 6.328 26 C -0.171 4.171 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.287 0.713 39 H 0.120 0.880 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.694 -9.150 21.101 23.474 hybrid contribution -0.334 0.440 -0.825 0.993 sum 4.359 -8.710 20.276 22.495 Atomic orbital electron populations 1.21907 0.98479 0.99498 0.99417 1.18336 0.90995 0.91916 0.82143 0.98542 1.21548 1.32568 1.13569 0.90667 0.90567 1.25838 0.94895 0.95570 1.02474 1.70058 1.37098 1.23983 1.24619 0.85314 0.79043 0.77965 0.77827 1.19660 1.21421 1.18601 1.46288 1.64881 1.14256 1.09630 1.20977 0.77398 0.86968 0.85381 1.90647 1.53043 1.18540 1.85853 1.22939 1.03203 0.97265 0.92434 0.83994 1.23052 0.98293 0.97990 0.81444 1.88370 1.68454 1.54904 1.18805 1.23127 0.94960 0.86506 0.92241 0.86971 1.21552 1.01884 0.97954 0.93100 1.21376 1.04067 0.99990 0.88824 1.23967 0.75047 0.83938 0.84420 1.90739 1.50143 1.20744 1.83492 1.84512 1.74351 1.48350 1.25573 1.23173 1.04214 0.97831 0.91860 0.91561 0.93922 0.97230 0.92579 0.75798 0.92853 0.87381 0.89234 0.92784 0.86330 0.84495 0.71313 0.88006 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 2 C 0.27 13.88 2.56 44.25 0.11 13.99 16 3 H 0.00 -0.20 7.58 -2.38 -0.02 -0.22 16 4 C -0.55 -28.40 8.73 25.60 0.22 -28.17 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.51 16 8 Si 0.97 41.46 29.54 68.60 2.03 43.48 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 12 N -0.70 -28.03 5.01 -446.10 -2.24 -30.27 16 13 C 0.51 19.39 6.99 87.66 0.61 20.00 16 14 O -0.60 -29.16 15.43 -3.03 -0.05 -29.21 16 15 C -0.14 -3.43 3.39 -10.28 -0.03 -3.46 16 16 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 17 C 0.07 1.53 7.34 72.45 0.53 2.07 16 18 O -0.39 -8.27 10.69 -148.98 -1.59 -9.86 16 19 C 0.09 1.56 3.43 31.26 0.11 1.66 16 20 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 21 C -0.11 -1.92 4.25 30.59 0.13 -1.79 16 22 C -0.11 -1.38 5.73 29.84 0.17 -1.21 16 23 C 0.48 8.21 8.33 71.23 0.59 8.80 16 24 O -0.56 -14.17 16.74 21.96 0.37 -13.81 16 25 O -0.51 -6.04 13.42 -51.39 -0.69 -6.73 16 26 C -0.13 -3.17 5.65 32.05 0.18 -2.98 16 27 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.41 13.21 8.53 -92.71 -0.79 12.42 16 32 H 0.05 1.43 7.81 -2.39 -0.02 1.41 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.12 1.51 7.91 -2.39 -0.02 1.49 16 37 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.43 1.76 9.10 -74.05 -0.67 1.09 16 39 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 1.89 7.38 -2.39 -0.02 1.87 16 Total: -1.00 -75.64 338.04 1.41 -74.23 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.40 Total: 20.85 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 3.74 Total: 3.83 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.99 Total: -82.78 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -1.96 Total: -59.61 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -75.64 1.41 -74.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.609 kcal (2) G-P(sol) polarization free energy of solvation -75.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds