Wall clock time and date at job start Tue Mar 31 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.34779 * 119.99793 * 274.99565 * 12 2 1 14 14 O 1.21279 * 120.00185 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99614 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.80824 * 303.63149 * 15 13 12 17 17 C 1.54994 * 110.90633 * 67.29790 * 15 13 12 18 18 O 1.44376 * 103.49271 * 155.21772 * 17 15 13 19 19 C 1.43752 * 106.97425 * 319.94222 * 18 17 15 20 20 H 1.08999 * 109.87457 * 267.08525 * 19 18 17 21 21 C 1.53000 * 109.87717 * 145.93752 * 19 18 17 22 22 C 1.52997 * 109.47338 * 67.16725 * 21 19 18 23 23 C 1.50704 * 109.46796 * 179.97438 * 22 21 19 24 24 O 1.20825 * 120.00477 * 359.97438 * 23 22 21 25 25 O 1.34230 * 119.99803 * 179.97438 * 23 22 21 26 26 C 1.54097 * 107.29088 * 26.50957 * 19 18 17 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 31 31 H 0.97004 * 120.00223 * 94.99655 * 12 2 1 32 32 H 1.08998 * 110.62034 * 273.72260 * 17 15 13 33 33 H 1.09002 * 110.62099 * 36.71927 * 17 15 13 34 34 H 1.09004 * 109.46541 * 187.16604 * 21 19 18 35 35 H 1.09001 * 109.46970 * 307.16151 * 21 19 18 36 36 H 1.08991 * 109.47251 * 299.99663 * 22 21 19 37 37 H 1.08999 * 109.47313 * 60.00268 * 22 21 19 38 38 H 0.96702 * 117.00149 * 179.97438 * 25 23 22 39 39 H 1.09007 * 110.48370 * 239.29413 * 26 19 18 40 40 H 1.09005 * 110.48406 * 116.65349 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6489 -0.7288 3.5877 16 1 2.0271 -1.5946 3.8155 17 6 4.1335 -1.1416 3.4213 18 8 4.6130 -1.2298 4.7803 19 6 4.0337 -0.1298 5.5019 20 1 4.7127 0.7228 5.4855 21 6 3.7518 -0.5463 6.9469 22 6 5.0753 -0.7884 7.6753 23 6 4.7975 -1.1981 9.0987 24 8 3.6580 -1.2868 9.4905 25 8 5.8161 -1.4645 9.9313 26 6 2.7143 0.2374 4.7954 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7087 1.1612 -3.4844 31 1 2.2490 -1.6318 1.1526 32 1 4.2097 -2.1085 2.9239 33 1 4.6841 -0.3802 2.8687 34 1 3.1987 0.2456 7.4519 35 1 3.1612 -1.4624 6.9522 36 1 5.6284 -1.5803 7.1703 37 1 5.6659 0.1277 7.6699 38 1 5.5885 -1.7230 10.8349 39 1 2.7392 1.2726 4.4549 40 1 1.8668 0.0740 5.4612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:07 Heat of formation + Delta-G solvation = -194.608676 kcal Electronic energy + Delta-G solvation = -22357.804211 eV Core-core repulsion = 18750.834901 eV Total energy + Delta-G solvation = -3606.969310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60855 -40.02914 -38.27058 -36.49684 -34.87115 -33.96184 -32.52999 -32.01505 -29.56081 -28.40216 -25.29545 -24.97900 -23.44164 -21.73690 -20.91055 -20.54003 -19.37937 -18.38047 -17.61518 -16.85198 -16.57106 -16.11809 -15.81534 -15.46800 -15.17986 -14.80505 -14.36623 -13.95161 -13.67473 -13.45350 -13.21727 -12.99184 -12.47281 -12.15732 -12.11687 -11.85844 -11.75621 -11.49849 -11.27281 -11.16076 -11.03186 -10.98539 -10.82104 -10.78431 -10.61761 -10.35214 -10.26104 -9.77532 -9.10404 -9.06691 -8.58369 -7.97681 -6.15223 -4.25018 1.91775 2.74151 3.23344 3.26044 3.29161 3.30210 3.65696 4.09856 4.35542 4.41516 4.52513 4.69217 4.78197 4.94775 5.06384 5.17045 5.19137 5.24879 5.27312 5.46258 5.57245 5.69544 5.74069 5.79879 5.92734 6.05836 6.14196 6.20352 6.77750 6.79125 6.92737 7.11239 7.40314 7.51271 7.58226 7.65517 7.87173 8.11437 8.60360 8.73487 9.05292 9.42615 10.90654 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042045 B = 0.002767 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.786509 B =10117.770378 C =10522.373054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.510 3.490 14 O -0.551 6.551 15 C -0.147 4.147 16 H 0.105 0.895 17 C 0.063 3.937 18 O -0.373 6.373 19 C 0.076 3.924 20 H 0.073 0.927 21 C -0.107 4.107 22 C -0.112 4.112 23 C 0.478 3.522 24 O -0.518 6.518 25 O -0.520 6.520 26 C -0.137 4.137 27 H 0.014 0.986 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.408 0.592 39 H 0.099 0.901 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 -4.895 18.884 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.353 5.353 13 C 0.294 3.706 14 O -0.430 6.430 15 C -0.169 4.169 16 H 0.123 0.877 17 C -0.014 4.014 18 O -0.293 6.293 19 C 0.019 3.981 20 H 0.091 0.909 21 C -0.144 4.144 22 C -0.150 4.150 23 C 0.321 3.679 24 O -0.406 6.406 25 O -0.332 6.332 26 C -0.174 4.174 27 H 0.033 0.967 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.267 0.733 39 H 0.117 0.883 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.869 -3.979 18.523 20.515 hybrid contribution 0.037 -1.006 -0.382 1.076 sum 7.906 -4.985 18.141 20.407 Atomic orbital electron populations 1.22081 0.98451 0.99144 1.00928 1.18758 0.91053 0.93970 0.79995 0.93372 1.21171 1.32603 1.13268 0.90315 0.92099 1.24890 0.94780 0.94950 0.99084 1.69888 1.35723 1.22412 1.24041 0.86500 0.79170 0.79589 0.81782 1.20145 1.21124 1.20157 1.46549 1.64706 1.13553 1.10520 1.20028 0.78774 0.87374 0.84437 1.90645 1.51384 1.16105 1.84912 1.22906 0.98701 1.00139 0.95160 0.87710 1.23476 0.91065 1.02583 0.84307 1.88832 1.70337 1.48723 1.21379 1.22797 0.94375 0.89611 0.91345 0.90872 1.21670 0.95621 1.03945 0.93183 1.21396 1.01150 1.04892 0.87523 1.23709 0.82487 0.72778 0.88937 1.90734 1.23455 1.48760 1.77635 1.84557 1.40885 1.80532 1.27212 1.22905 0.97266 1.01794 0.95479 0.96671 0.89112 0.95449 0.92479 0.77873 0.88178 0.91300 0.89655 0.90012 0.86798 0.87585 0.73298 0.88299 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.58 2.56 -69.08 -0.18 6.41 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.71 -14.11 5.07 -54.93 -0.28 -14.38 16 13 C 0.51 9.65 7.11 -10.98 -0.08 9.57 16 14 O -0.55 -12.65 15.12 5.56 0.08 -12.57 16 15 C -0.15 -2.03 3.52 -89.77 -0.32 -2.34 16 16 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 17 C 0.06 0.77 7.16 38.21 0.27 1.05 16 18 O -0.37 -4.46 10.84 -35.23 -0.38 -4.84 16 19 C 0.08 0.81 3.41 -26.16 -0.09 0.72 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.11 -0.99 3.99 -26.73 -0.11 -1.09 16 22 C -0.11 -0.87 5.73 -27.88 -0.16 -1.03 16 23 C 0.48 4.29 8.33 36.01 0.30 4.59 16 24 O -0.52 -6.32 16.74 -18.75 -0.31 -6.64 16 25 O -0.52 -3.52 13.42 -39.26 -0.53 -4.04 16 26 C -0.14 -1.72 6.06 -25.21 -0.15 -1.87 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.65 8.54 -40.82 -0.35 6.30 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.11 0.86 7.91 -51.93 -0.41 0.45 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.41 1.12 9.10 45.56 0.41 1.53 16 39 H 0.10 1.43 6.86 -51.92 -0.36 1.08 16 40 H 0.08 0.94 7.70 -51.93 -0.40 0.54 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -32.78 337.41 -6.43 -39.20 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.14 Total: 6.68 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.56 Total: 0.18 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.35 Total: -38.39 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.14 Total: -28.09 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.78 -6.43 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.405 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds