Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.34779 * 119.99793 * 274.99565 * 12 2 1 14 14 O 1.21279 * 120.00185 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99614 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.80824 * 303.63149 * 15 13 12 17 17 C 1.54994 * 110.90633 * 67.29790 * 15 13 12 18 18 O 1.44376 * 103.49271 * 155.21772 * 17 15 13 19 19 C 1.43752 * 106.97425 * 319.94222 * 18 17 15 20 20 H 1.08999 * 109.87457 * 267.08525 * 19 18 17 21 21 C 1.53000 * 109.87717 * 145.93752 * 19 18 17 22 22 C 1.52997 * 109.47338 * 67.16725 * 21 19 18 23 23 C 1.50704 * 109.46796 * 179.97438 * 22 21 19 24 24 O 1.20825 * 120.00477 * 359.97438 * 23 22 21 25 25 O 1.34230 * 119.99803 * 179.97438 * 23 22 21 26 26 C 1.54097 * 107.29088 * 26.50957 * 19 18 17 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 31 31 H 0.97004 * 120.00223 * 94.99655 * 12 2 1 32 32 H 1.08998 * 110.62034 * 273.72260 * 17 15 13 33 33 H 1.09002 * 110.62099 * 36.71927 * 17 15 13 34 34 H 1.09004 * 109.46541 * 187.16604 * 21 19 18 35 35 H 1.09001 * 109.46970 * 307.16151 * 21 19 18 36 36 H 1.08991 * 109.47251 * 299.99663 * 22 21 19 37 37 H 1.08999 * 109.47313 * 60.00268 * 22 21 19 38 38 H 0.96702 * 117.00149 * 179.97438 * 25 23 22 39 39 H 1.09007 * 110.48370 * 239.29413 * 26 19 18 40 40 H 1.09005 * 110.48406 * 116.65349 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6489 -0.7288 3.5877 16 1 2.0271 -1.5946 3.8155 17 6 4.1335 -1.1416 3.4213 18 8 4.6130 -1.2298 4.7803 19 6 4.0337 -0.1298 5.5019 20 1 4.7127 0.7228 5.4855 21 6 3.7518 -0.5463 6.9469 22 6 5.0753 -0.7884 7.6753 23 6 4.7975 -1.1981 9.0987 24 8 3.6580 -1.2868 9.4905 25 8 5.8161 -1.4645 9.9313 26 6 2.7143 0.2374 4.7954 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7087 1.1612 -3.4844 31 1 2.2490 -1.6318 1.1526 32 1 4.2097 -2.1085 2.9239 33 1 4.6841 -0.3802 2.8687 34 1 3.1987 0.2456 7.4519 35 1 3.1612 -1.4624 6.9522 36 1 5.6284 -1.5803 7.1703 37 1 5.6659 0.1277 7.6699 38 1 5.5885 -1.7230 10.8349 39 1 2.7392 1.2726 4.4549 40 1 1.8668 0.0740 5.4612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -218.868841 kcal Electronic energy + Delta-G solvation = -22358.856211 eV Core-core repulsion = 18750.834901 eV Total energy + Delta-G solvation = -3608.021310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.46330 -41.08179 -39.62871 -37.13866 -36.73309 -34.76367 -34.31113 -33.25665 -30.99727 -29.68940 -27.34188 -25.79978 -24.78283 -22.82662 -22.03415 -21.61662 -20.96805 -19.11506 -19.04151 -17.84319 -17.56940 -17.29603 -17.17857 -16.67960 -16.40608 -16.18170 -15.77828 -15.37430 -14.72372 -14.44448 -14.34791 -14.23641 -14.03915 -13.65624 -13.28232 -13.02298 -12.89488 -12.86455 -12.74952 -12.52703 -12.36025 -12.26686 -12.17797 -12.05626 -11.93827 -11.67369 -11.55196 -11.11317 -10.72855 -10.69504 -10.56132 -9.77013 -8.17062 -6.34702 1.25360 1.46139 1.47864 1.55659 1.75070 2.18660 2.32847 2.52851 2.93092 3.13536 3.41549 3.70888 3.91461 3.93649 3.99648 4.12767 4.25577 4.34496 4.52882 4.62431 4.73629 4.76406 4.77047 4.78570 4.91567 5.00429 5.05597 5.08331 5.09723 5.25761 5.43256 5.60889 5.66817 5.68573 5.84768 5.89957 6.09856 6.73031 6.94361 7.03199 7.32588 7.53544 8.88982 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042045 B = 0.002767 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.786509 B =10117.770378 C =10522.373054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.702 5.702 13 C 0.508 3.492 14 O -0.596 6.596 15 C -0.138 4.138 16 H 0.130 0.870 17 C 0.067 3.933 18 O -0.372 6.372 19 C 0.082 3.918 20 H 0.084 0.916 21 C -0.101 4.101 22 C -0.109 4.109 23 C 0.484 3.516 24 O -0.556 6.556 25 O -0.516 6.516 26 C -0.138 4.138 27 H 0.011 0.989 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.426 0.574 39 H 0.075 0.925 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.745 -6.916 19.633 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.350 5.350 13 C 0.295 3.705 14 O -0.478 6.478 15 C -0.159 4.159 16 H 0.148 0.852 17 C -0.010 4.010 18 O -0.292 6.292 19 C 0.024 3.976 20 H 0.102 0.898 21 C -0.139 4.139 22 C -0.147 4.147 23 C 0.329 3.671 24 O -0.448 6.448 25 O -0.329 6.329 26 C -0.176 4.176 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.287 0.713 39 H 0.094 0.906 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.401 -6.046 19.317 22.317 hybrid contribution -0.406 -0.326 -0.534 0.746 sum 8.994 -6.371 18.783 21.778 Atomic orbital electron populations 1.21910 0.98438 0.99480 0.99544 1.18341 0.91034 0.91941 0.82042 0.98385 1.21520 1.32608 1.13604 0.90701 0.90630 1.25809 0.94887 0.95583 1.02388 1.70045 1.36978 1.23976 1.24656 0.85396 0.78694 0.78690 0.77549 1.18857 1.21383 1.19474 1.46288 1.64808 1.14273 1.09644 1.20879 0.77419 0.86907 0.85315 1.90629 1.53079 1.18390 1.85726 1.22896 1.00022 1.00512 0.92500 0.85234 1.23470 0.89443 1.03363 0.84740 1.88842 1.70273 1.49056 1.20982 1.22815 0.93293 0.89775 0.91682 0.89774 1.21573 0.96479 1.03493 0.92323 1.21396 1.00452 1.06101 0.86718 1.23860 0.82062 0.71780 0.89425 1.90727 1.24942 1.50651 1.78438 1.84517 1.40027 1.79978 1.28391 1.22917 0.99078 1.00204 0.95394 0.96970 0.91542 0.94041 0.92578 0.75851 0.85925 0.92565 0.89507 0.90960 0.86150 0.85510 0.71263 0.90623 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.73 2.56 44.25 0.11 13.85 16 3 H 0.00 -0.11 7.58 -2.39 -0.02 -0.12 16 4 C -0.55 -28.24 8.73 25.60 0.22 -28.01 16 5 H 0.08 3.60 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.26 11.32 21.44 0.24 -52.02 16 8 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 12 N -0.70 -27.79 5.07 -446.09 -2.26 -30.05 16 13 C 0.51 19.22 7.11 87.66 0.62 19.85 16 14 O -0.60 -28.26 15.12 -3.03 -0.05 -28.30 16 15 C -0.14 -3.58 3.52 -10.24 -0.04 -3.61 16 16 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 17 C 0.07 1.50 7.16 72.66 0.52 2.02 16 18 O -0.37 -7.89 10.84 -148.98 -1.61 -9.51 16 19 C 0.08 1.57 3.41 30.97 0.11 1.68 16 20 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 21 C -0.10 -1.67 3.99 30.59 0.12 -1.55 16 22 C -0.11 -1.42 5.73 29.85 0.17 -1.25 16 23 C 0.48 7.76 8.33 71.24 0.59 8.35 16 24 O -0.56 -12.97 16.74 21.97 0.37 -12.60 16 25 O -0.52 -5.78 13.42 -51.41 -0.69 -6.47 16 26 C -0.14 -3.34 6.06 31.58 0.19 -3.15 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.41 13.21 8.54 -92.71 -0.79 12.41 16 32 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 1.42 8.04 -2.39 -0.02 1.40 16 34 H 0.09 1.43 8.10 -2.38 -0.02 1.41 16 35 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 36 H 0.12 1.47 7.91 -2.39 -0.02 1.45 16 37 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.43 1.43 9.10 -74.06 -0.67 0.75 16 39 H 0.08 2.22 6.86 -2.38 -0.02 2.20 16 40 H 0.09 2.01 7.70 -2.38 -0.02 1.99 16 Total: -1.00 -72.09 337.41 1.37 -70.72 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.40 Total: 21.71 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 3.74 Total: 3.21 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -2.02 Total: -82.07 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -1.98 Total: -56.88 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -72.09 1.37 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.147 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds