Wall clock time and date at job start Tue Mar 31 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 60.00328 * 8 6 4 10 10 H 1.48495 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47239 * 300.00048 * 8 6 4 12 12 N 1.46506 * 109.46733 * 120.00142 * 2 1 3 13 13 C 1.34781 * 119.99905 * 274.99905 * 12 2 1 14 14 O 1.21281 * 119.99724 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99783 * 180.02562 * 13 12 2 16 16 H 1.08999 * 110.45908 * 57.39462 * 15 13 12 17 17 C 1.54483 * 110.50835 * 294.63773 * 15 13 12 18 18 O 1.44419 * 104.80266 * 217.37844 * 17 15 13 19 19 C 1.44418 * 105.27797 * 40.51621 * 18 17 15 20 20 H 1.08998 * 110.37574 * 78.31313 * 19 18 17 21 21 C 1.53001 * 110.37778 * 200.65416 * 19 18 17 22 22 C 1.52995 * 109.47194 * 290.38055 * 21 19 18 23 23 C 1.50702 * 109.47238 * 179.97438 * 22 21 19 24 24 O 1.20822 * 120.00055 * 0.02562 * 23 22 21 25 25 O 1.34228 * 119.99839 * 180.02562 * 23 22 21 26 26 C 1.54488 * 104.80350 * 319.48872 * 19 18 17 27 27 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 28 28 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 29 29 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00135 * 95.00270 * 12 2 1 32 32 H 1.08998 * 110.37268 * 336.21170 * 17 15 13 33 33 H 1.09005 * 110.36735 * 98.55032 * 17 15 13 34 34 H 1.09007 * 109.46423 * 50.38257 * 21 19 18 35 35 H 1.09003 * 109.47513 * 170.37601 * 21 19 18 36 36 H 1.09000 * 109.46803 * 299.99712 * 22 21 19 37 37 H 1.09003 * 109.47261 * 59.99392 * 22 21 19 38 38 H 0.96704 * 116.99633 * 180.02562 * 25 23 22 39 39 H 1.08996 * 110.50646 * 265.33490 * 26 19 18 40 40 H 1.08997 * 110.63000 * 142.68139 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8281 -0.4192 -5.2204 11 1 3.8077 -1.1190 -4.0077 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8581 1.1583 2.4118 15 6 2.6497 -0.7287 3.5876 16 1 3.6301 -1.1669 3.4006 17 6 1.6449 -1.8134 4.0348 18 8 1.6748 -1.7715 5.4781 19 6 1.7362 -0.3689 5.8168 20 1 0.7506 0.0874 5.7243 21 6 2.2774 -0.1869 7.2363 22 6 1.2417 -0.6872 8.2451 23 6 1.7751 -0.5085 9.6432 24 8 2.8710 -0.0296 9.8151 25 8 1.0327 -0.8813 10.6975 26 6 2.7111 0.2436 4.7868 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7097 1.1618 -3.4844 31 1 2.2490 -1.6318 1.1527 32 1 0.6453 -1.5787 3.6690 33 1 1.9605 -2.7935 3.6771 34 1 3.1997 -0.7569 7.3492 35 1 2.4788 0.8693 7.4158 36 1 0.3196 -0.1172 8.1320 37 1 1.0403 -1.7433 8.0657 38 1 1.4170 -0.7467 11.5746 39 1 3.7212 0.2841 5.1943 40 1 2.3802 1.2386 4.4893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:08 Heat of formation + Delta-G solvation = -218.578235 kcal Electronic energy + Delta-G solvation = -22401.082566 eV Core-core repulsion = 18793.073858 eV Total energy + Delta-G solvation = -3608.008708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48089 -41.10621 -39.56628 -37.14998 -36.73293 -34.79723 -34.31070 -33.23583 -30.98207 -29.68983 -27.33775 -25.88345 -24.65640 -22.91439 -22.04188 -21.62740 -20.90078 -19.09699 -19.05349 -17.87969 -17.61294 -17.30805 -17.18370 -16.59267 -16.45075 -16.17950 -15.71342 -15.60540 -14.69393 -14.40270 -14.37784 -14.19222 -13.98225 -13.68949 -13.21330 -13.03521 -12.85283 -12.81425 -12.72130 -12.53711 -12.41830 -12.26608 -12.17739 -12.06568 -11.91858 -11.70878 -11.55787 -11.11537 -10.79305 -10.71071 -10.55705 -9.76933 -8.17488 -6.35071 1.24093 1.45720 1.47476 1.55259 1.76149 2.17008 2.33541 2.54812 2.92855 3.13009 3.45847 3.67026 3.91830 3.92474 4.01750 4.09896 4.28360 4.37780 4.48878 4.60479 4.74708 4.76139 4.78064 4.79659 4.92257 4.99578 5.01614 5.08240 5.09974 5.22454 5.43756 5.60962 5.65514 5.69052 5.79049 5.90509 6.10223 6.72776 6.94744 7.02253 7.32327 7.53888 8.88499 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.051405 B = 0.002689 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.567127 B =10408.757989 C =10475.646657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.596 6.596 15 C -0.138 4.138 16 H 0.129 0.871 17 C 0.064 3.936 18 O -0.371 6.371 19 C 0.079 3.921 20 H 0.075 0.925 21 C -0.095 4.095 22 C -0.111 4.111 23 C 0.485 3.515 24 O -0.555 6.555 25 O -0.515 6.515 26 C -0.142 4.142 27 H 0.012 0.988 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.426 0.574 39 H 0.094 0.906 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -7.717 20.758 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.350 5.350 13 C 0.292 3.708 14 O -0.478 6.478 15 C -0.159 4.159 16 H 0.147 0.853 17 C -0.013 4.013 18 O -0.290 6.290 19 C 0.022 3.978 20 H 0.093 0.907 21 C -0.133 4.133 22 C -0.148 4.148 23 C 0.330 3.670 24 O -0.446 6.446 25 O -0.329 6.329 26 C -0.180 4.180 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.288 0.712 39 H 0.113 0.887 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.462 -6.894 20.454 21.589 hybrid contribution 0.546 0.049 -0.706 0.894 sum 1.009 -6.844 19.749 20.925 Atomic orbital electron populations 1.21894 0.98240 0.99552 0.99543 1.18336 0.91159 0.91854 0.82012 0.98533 1.21528 1.32771 1.13473 0.90780 0.90732 1.25810 0.94867 0.95602 1.02373 1.70047 1.36967 1.23932 1.24660 0.85397 0.78616 0.78751 0.77568 1.18758 1.21339 1.19634 1.46277 1.64887 1.14251 1.09596 1.20980 0.77351 0.86984 0.85451 1.90617 1.53159 1.18390 1.85616 1.22723 1.02886 0.97808 0.92530 0.85277 1.23359 0.97356 0.99524 0.81089 1.89088 1.95218 1.24235 1.20452 1.23032 0.98502 0.81902 0.94405 0.90691 1.21418 0.98469 1.02972 0.90425 1.21402 1.01146 1.06625 0.85639 1.23792 0.82205 0.72341 0.88680 1.90725 1.23264 1.43288 1.87363 1.84517 1.50897 1.77915 1.19550 1.22963 1.01846 0.99791 0.93372 0.96887 0.91624 0.93902 0.92568 0.75854 0.92641 0.85530 0.90528 0.89513 0.85746 0.86042 0.71214 0.88718 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 9.26 71.98 0.67 -5.95 16 2 C 0.27 13.69 2.56 44.24 0.11 13.81 16 3 H 0.00 -0.20 7.58 -2.39 -0.02 -0.21 16 4 C -0.55 -28.35 8.73 25.60 0.22 -28.13 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.19 11.32 21.45 0.24 -51.94 16 8 Si 0.97 41.33 29.54 68.60 2.03 43.35 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 12 N -0.70 -27.66 5.06 -446.09 -2.26 -29.92 16 13 C 0.51 19.04 6.98 87.66 0.61 19.65 16 14 O -0.60 -28.10 14.94 -3.03 -0.05 -28.14 16 15 C -0.14 -3.56 3.51 -10.52 -0.04 -3.59 16 16 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 17 C 0.06 1.40 7.17 72.49 0.52 1.92 16 18 O -0.37 -8.03 11.13 -148.98 -1.66 -9.69 16 19 C 0.08 1.63 3.25 31.10 0.10 1.73 16 20 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.10 -1.66 4.13 30.59 0.13 -1.54 16 22 C -0.11 -1.54 5.75 29.85 0.17 -1.37 16 23 C 0.49 8.00 8.33 71.24 0.59 8.60 16 24 O -0.56 -13.08 16.74 21.98 0.37 -12.71 16 25 O -0.52 -5.98 13.42 -51.40 -0.69 -6.67 16 26 C -0.14 -3.48 6.22 31.61 0.20 -3.29 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 29 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.41 13.12 8.54 -92.71 -0.79 12.33 16 32 H 0.06 1.35 7.86 -2.39 -0.02 1.34 16 33 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 35 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 36 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.12 1.54 8.01 -2.39 -0.02 1.52 16 38 H 0.43 1.54 9.10 -74.05 -0.67 0.87 16 39 H 0.09 2.00 7.87 -2.39 -0.02 1.98 16 40 H 0.08 2.39 6.50 -2.39 -0.02 2.38 16 Total: -1.00 -72.06 337.28 1.32 -70.74 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -0.40 Total: 21.99 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 3.73 Total: 3.00 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -2.01 Total: -81.86 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -2.03 Total: -57.22 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -72.06 1.32 -70.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.839 kcal (2) G-P(sol) polarization free energy of solvation -72.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds