Wall clock time and date at job start Tue Mar 31 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 C 1.50701 * 109.54180 * 59.82644 * 16 14 13 18 18 O 1.20829 * 119.99873 * 119.99533 * 17 16 14 19 19 O 1.34230 * 119.99874 * 300.00187 * 17 16 14 20 20 C 1.53174 * 109.54640 * 299.55744 * 16 14 13 21 21 C 1.53088 * 109.16292 * 297.11650 * 20 16 14 22 22 O 1.42906 * 109.41492 * 302.38399 * 21 20 16 23 23 C 1.42909 * 114.09008 * 61.16091 * 22 21 20 24 24 C 1.53089 * 109.41867 * 298.83875 * 23 22 21 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 31 31 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 32 32 H 0.96699 * 117.00095 * 180.02562 * 19 17 16 33 33 H 1.09005 * 109.51815 * 57.01992 * 20 16 14 34 34 H 1.09002 * 109.52436 * 177.20333 * 20 16 14 35 35 H 1.09003 * 109.47901 * 182.41030 * 21 20 16 36 36 H 1.08996 * 109.49474 * 62.38036 * 21 20 16 37 37 H 1.08996 * 109.47533 * 178.85762 * 23 22 21 38 38 H 1.08999 * 109.48747 * 58.83483 * 23 22 21 39 39 H 1.08994 * 109.52301 * 297.71014 * 24 23 22 40 40 H 1.09001 * 109.52303 * 177.51267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 6 0.9937 4.4625 2.9533 18 8 0.5842 5.5954 3.0476 19 8 2.3014 4.2059 3.1141 20 6 0.0686 2.3181 3.7976 21 6 -0.9628 1.2210 3.5216 22 8 -2.2568 1.8106 3.3793 23 6 -2.3597 2.7374 2.2963 24 6 -1.3843 3.8954 2.5230 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8292 -0.0602 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 2.8765 4.9596 3.3044 33 1 1.0626 1.8755 3.8627 34 1 -0.1716 2.8160 4.7370 35 1 -0.9743 0.5156 4.3525 36 1 -0.6992 0.6967 2.6032 37 1 -3.3774 3.1242 2.2444 38 1 -2.1144 2.2331 1.3616 39 1 -1.6539 4.4251 3.4367 40 1 -1.4294 4.5806 1.6766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:48 Heat of formation + Delta-G solvation = -182.841913 kcal Electronic energy + Delta-G solvation = -24846.694063 eV Core-core repulsion = 21240.234997 eV Total energy + Delta-G solvation = -3606.459065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30366 -39.38088 -37.99990 -36.21982 -35.22745 -33.90836 -32.43047 -31.09236 -30.83622 -27.29869 -26.44420 -23.68527 -23.36295 -22.30012 -21.74768 -19.80635 -19.18560 -18.25172 -17.33329 -16.99645 -16.01607 -15.93031 -15.54169 -15.45882 -14.93671 -14.68628 -14.31982 -14.17082 -13.56105 -13.41524 -13.04660 -12.74014 -12.43103 -12.33167 -11.98168 -11.63286 -11.53955 -11.30571 -11.29893 -11.07427 -10.94327 -10.87234 -10.76534 -10.48216 -10.35789 -10.14987 -9.76685 -9.50346 -9.13247 -8.96023 -8.55571 -7.94900 -6.17661 -4.27231 2.04444 2.69888 3.21812 3.27759 3.28342 3.35525 3.80630 3.96971 4.30517 4.32556 4.58993 4.86995 5.12068 5.14491 5.19237 5.27288 5.49055 5.56514 5.61021 5.71055 5.81473 5.93430 6.05149 6.20983 6.30852 6.40895 6.43105 6.57599 6.95503 7.10672 7.25168 7.26079 7.32054 7.53722 7.65079 7.81383 7.81993 8.10518 8.51688 8.68132 8.95510 9.39767 10.87639 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.006145 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.536122 B = 4555.555123 C = 5346.003376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.692 5.692 14 C 0.511 3.489 15 O -0.531 6.531 16 C -0.076 4.076 17 C 0.497 3.503 18 O -0.508 6.508 19 O -0.506 6.506 20 C -0.139 4.139 21 C 0.055 3.945 22 O -0.384 6.384 23 C 0.050 3.950 24 C -0.116 4.116 25 H 0.025 0.975 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.101 0.899 30 H 0.265 0.735 31 H 0.395 0.605 32 H 0.413 0.587 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 2.984 11.578 12.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.340 5.340 14 C 0.294 3.706 15 O -0.409 6.409 16 C -0.081 4.081 17 C 0.338 3.662 18 O -0.396 6.396 19 O -0.317 6.317 20 C -0.177 4.177 21 C -0.021 4.021 22 O -0.302 6.302 23 C -0.026 4.026 24 C -0.154 4.154 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.273 0.727 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.029 2.775 10.746 12.631 hybrid contribution 2.081 0.717 0.231 2.213 sum -3.949 3.492 10.977 12.178 Atomic orbital electron populations 1.21953 0.98425 0.98307 1.01227 1.21943 0.92532 0.99663 1.02507 1.18857 0.94428 0.89210 0.80639 0.93246 1.21175 0.90565 1.39204 1.06397 0.91997 1.24874 0.98615 0.94754 0.95347 1.69873 1.35265 1.37474 1.09309 0.86511 0.84815 0.78311 0.77485 1.20125 1.21130 1.20223 1.46573 1.13941 1.54520 1.18923 1.19551 0.83667 0.80154 0.87272 1.90654 1.51120 1.59996 1.39164 1.21018 0.95204 0.93987 0.97874 1.22881 0.81745 0.89404 0.72175 1.90702 1.78515 1.23594 1.46763 1.84506 1.19497 1.45035 1.82692 1.22249 1.02349 0.96630 0.96480 1.22697 0.82674 0.94060 1.02697 1.87881 1.30574 1.59494 1.52287 1.22905 0.99102 0.89376 0.91239 1.21909 0.90175 0.99203 1.04100 0.95628 0.94107 0.93031 0.94885 0.88122 0.92451 0.77104 0.72749 0.88958 0.89778 0.88178 0.91640 0.88673 0.89642 0.90160 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.63 16 2 C -0.13 -2.92 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.43 2.24 -69.09 -0.15 6.27 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.56 8.73 -34.44 -0.30 -13.86 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.69 -13.44 4.67 -54.93 -0.26 -13.70 16 14 C 0.51 9.46 3.90 -10.99 -0.04 9.41 16 15 O -0.53 -11.24 10.97 5.56 0.06 -11.18 16 16 C -0.08 -1.14 0.58 -156.63 -0.09 -1.23 16 17 C 0.50 7.33 6.92 36.01 0.25 7.58 16 18 O -0.51 -8.48 16.73 -18.75 -0.31 -8.80 16 19 O -0.51 -6.11 11.81 -39.26 -0.46 -6.58 16 20 C -0.14 -1.71 4.79 -26.60 -0.13 -1.84 16 21 C 0.06 0.72 6.61 37.20 0.25 0.96 16 22 O -0.38 -5.49 10.77 -35.23 -0.38 -5.87 16 23 C 0.05 0.71 6.55 37.20 0.24 0.96 16 24 C -0.12 -1.68 3.87 -26.59 -0.10 -1.78 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.79 3.35 -51.93 -0.17 0.62 16 27 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.58 5.95 -51.93 -0.31 2.28 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 6.93 6.62 -40.82 -0.27 6.66 16 32 H 0.41 3.16 9.10 45.56 0.41 3.58 16 33 H 0.09 1.05 7.52 -51.93 -0.39 0.66 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.98 5.13 -51.93 -0.27 0.71 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.42 5.80 -51.93 -0.30 1.11 16 39 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 40 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -30.16 312.27 -5.63 -35.79 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.59 Total: 11.46 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 0.00 Total: 2.44 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.37 Total: -37.01 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.10 Total: -32.43 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.16 -5.63 -35.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.054 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds