Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 C 1.50701 * 109.54180 * 59.82644 * 16 14 13 18 18 O 1.20829 * 119.99873 * 119.99533 * 17 16 14 19 19 O 1.34230 * 119.99874 * 300.00187 * 17 16 14 20 20 C 1.53174 * 109.54640 * 299.55744 * 16 14 13 21 21 C 1.53088 * 109.16292 * 297.11650 * 20 16 14 22 22 O 1.42906 * 109.41492 * 302.38399 * 21 20 16 23 23 C 1.42909 * 114.09008 * 61.16091 * 22 21 20 24 24 C 1.53089 * 109.41867 * 298.83875 * 23 22 21 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 31 31 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 32 32 H 0.96699 * 117.00095 * 180.02562 * 19 17 16 33 33 H 1.09005 * 109.51815 * 57.01992 * 20 16 14 34 34 H 1.09002 * 109.52436 * 177.20333 * 20 16 14 35 35 H 1.09003 * 109.47901 * 182.41030 * 21 20 16 36 36 H 1.08996 * 109.49474 * 62.38036 * 21 20 16 37 37 H 1.08996 * 109.47533 * 178.85762 * 23 22 21 38 38 H 1.08999 * 109.48747 * 58.83483 * 23 22 21 39 39 H 1.08994 * 109.52301 * 297.71014 * 24 23 22 40 40 H 1.09001 * 109.52303 * 177.51267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 6 0.9937 4.4625 2.9533 18 8 0.5842 5.5954 3.0476 19 8 2.3014 4.2059 3.1141 20 6 0.0686 2.3181 3.7976 21 6 -0.9628 1.2210 3.5216 22 8 -2.2568 1.8106 3.3793 23 6 -2.3597 2.7374 2.2963 24 6 -1.3843 3.8954 2.5230 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8292 -0.0602 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 2.8765 4.9596 3.3044 33 1 1.0626 1.8755 3.8627 34 1 -0.1716 2.8160 4.7370 35 1 -0.9743 0.5156 4.3525 36 1 -0.6992 0.6967 2.6032 37 1 -3.3774 3.1242 2.2444 38 1 -2.1144 2.2331 1.3616 39 1 -1.6539 4.4251 3.4367 40 1 -1.4294 4.5806 1.6766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589463735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -205.003074 kcal Electronic energy + Delta-G solvation = -24847.655043 eV Core-core repulsion = 21240.234997 eV Total energy + Delta-G solvation = -3607.420045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.55027 -40.63905 -39.31811 -37.34182 -36.94758 -35.16493 -34.23657 -32.69315 -32.07198 -29.05017 -27.74020 -25.18599 -24.75576 -23.53758 -23.09222 -21.53257 -20.67975 -19.44319 -18.66253 -18.33328 -17.60433 -17.22876 -16.99732 -16.67446 -16.44392 -16.09183 -15.64929 -15.55393 -14.86719 -14.80515 -14.45584 -14.28015 -13.84447 -13.44243 -13.42197 -13.34897 -13.10850 -12.90619 -12.68020 -12.64603 -12.40146 -12.18890 -12.18513 -12.01937 -11.87706 -11.63223 -11.30978 -11.04877 -10.86066 -10.51579 -10.32542 -9.66382 -8.14981 -6.31785 0.85296 1.45575 1.46606 1.47527 1.54846 2.06633 2.29565 2.51148 2.91791 3.14761 3.17616 3.46643 3.80088 3.89193 4.07158 4.19615 4.39401 4.44789 4.53154 4.57004 4.63453 4.70347 4.75354 4.78606 4.91794 4.97220 5.02550 5.15027 5.31256 5.42867 5.47296 5.55865 5.61557 5.80909 5.91597 6.17333 6.18443 6.74939 6.82020 6.87607 7.31882 7.47805 8.89875 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.006145 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.536122 B = 4555.555123 C = 5346.003376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.688 5.688 14 C 0.511 3.489 15 O -0.561 6.561 16 C -0.073 4.073 17 C 0.502 3.498 18 O -0.530 6.530 19 O -0.500 6.500 20 C -0.134 4.134 21 C 0.051 3.949 22 O -0.387 6.387 23 C 0.053 3.947 24 C -0.114 4.114 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.406 0.594 32 H 0.434 0.566 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.042 0.958 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 3.052 14.047 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.337 5.337 14 C 0.295 3.705 15 O -0.441 6.441 16 C -0.078 4.078 17 C 0.344 3.656 18 O -0.419 6.419 19 O -0.314 6.314 20 C -0.172 4.172 21 C -0.025 4.025 22 O -0.306 6.306 23 C -0.023 4.023 24 C -0.152 4.152 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.243 0.757 32 H 0.297 0.703 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.060 0.940 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.226 2.857 13.257 14.534 hybrid contribution 1.823 0.720 -0.547 2.035 sum -3.404 3.578 12.710 13.636 Atomic orbital electron populations 1.21816 0.96947 0.99329 1.00625 1.21772 0.93769 0.98843 1.01502 1.18417 0.93684 0.89306 0.80946 0.98336 1.21534 0.91421 1.38881 1.06676 0.90968 1.25712 1.03002 0.94452 0.95082 1.70032 1.37021 1.38340 1.09808 0.85486 0.79500 0.78345 0.77535 1.18805 1.21436 1.19856 1.46283 1.14767 1.54773 1.17850 1.20114 0.82710 0.79393 0.88285 1.90656 1.51852 1.60807 1.40791 1.20987 0.95523 0.94663 0.96579 1.22729 0.82415 0.88738 0.71758 1.90702 1.79052 1.24218 1.47929 1.84451 1.18588 1.46279 1.82042 1.22328 1.02976 0.95781 0.96100 1.22851 0.82313 0.94599 1.02754 1.87884 1.31423 1.59420 1.51852 1.22838 1.00223 0.89110 0.90124 1.21901 0.90085 0.99035 1.04141 0.93674 0.92796 0.95614 0.93698 0.91086 0.92655 0.75732 0.70302 0.87636 0.87304 0.85089 0.94010 0.86599 0.92450 0.88475 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.51 71.98 0.61 -4.87 16 2 C -0.12 -5.57 5.45 30.59 0.17 -5.41 16 3 C 0.28 13.59 2.24 44.24 0.10 13.69 16 4 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 5 C -0.55 -27.72 8.73 25.60 0.22 -27.50 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -50.85 11.29 21.45 0.24 -50.61 16 9 Si 0.97 40.85 29.54 68.60 2.03 42.87 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 N -0.69 -26.47 4.67 -446.10 -2.08 -28.55 16 14 C 0.51 18.81 3.90 87.66 0.34 19.15 16 15 O -0.56 -24.47 10.97 -3.03 -0.03 -24.50 16 16 C -0.07 -2.06 0.58 -53.55 -0.03 -2.09 16 17 C 0.50 13.79 6.92 71.24 0.49 14.28 16 18 O -0.53 -16.77 16.73 21.96 0.37 -16.41 16 19 O -0.50 -10.75 11.81 -51.41 -0.61 -11.35 16 20 C -0.13 -2.89 4.79 30.68 0.15 -2.75 16 21 C 0.05 1.20 6.61 72.01 0.48 1.67 16 22 O -0.39 -10.25 10.77 -148.98 -1.60 -11.86 16 23 C 0.05 1.47 6.55 72.01 0.47 1.94 16 24 C -0.11 -3.16 3.87 30.68 0.12 -3.04 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 2.12 3.35 -2.39 -0.01 2.11 16 27 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 3.76 5.95 -2.39 -0.01 3.74 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.41 13.62 6.62 -92.70 -0.61 13.00 16 32 H 0.43 5.38 9.10 -74.06 -0.67 4.70 16 33 H 0.11 2.02 7.52 -2.38 -0.02 2.00 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.19 5.13 -2.39 -0.01 1.17 16 37 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 1.92 5.80 -2.39 -0.01 1.91 16 39 H 0.10 2.39 8.03 -2.39 -0.02 2.37 16 40 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 Total: -1.00 -66.35 312.27 1.68 -64.67 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.20 Total: 29.28 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 3.57 Total: 6.45 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.84 Total: -79.16 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -1.88 Total: -64.12 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -66.35 1.68 -64.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.332 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds