Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46877 * 2 1 4 4 H 1.08996 * 109.47276 * 55.00173 * 3 2 1 5 5 C 1.50703 * 109.47095 * 175.00242 * 3 2 1 6 6 H 1.07997 * 120.00142 * 119.99858 * 5 3 2 7 7 C 1.37873 * 119.99676 * 299.99701 * 5 3 2 8 8 N 1.31516 * 120.00505 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99973 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47195 * 120.00227 * 9 7 5 12 12 H 1.48498 * 109.47366 * 239.99875 * 9 7 5 13 13 N 1.46498 * 109.46975 * 294.99684 * 3 2 1 14 14 C 1.34783 * 119.99863 * 85.00561 * 13 3 2 15 15 O 1.21283 * 119.99802 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00232 * 180.02562 * 14 13 3 17 17 C 1.50706 * 109.61508 * 59.77228 * 16 14 13 18 18 O 1.20819 * 120.00017 * 120.22845 * 17 16 14 19 19 O 1.34228 * 119.99718 * 300.22066 * 17 16 14 20 20 C 1.53177 * 109.53042 * 299.55765 * 16 14 13 21 21 C 1.53092 * 109.16443 * 297.09399 * 20 16 14 22 22 O 1.42905 * 109.42428 * 302.41109 * 21 20 16 23 23 C 1.42901 * 114.09770 * 61.14988 * 22 21 20 24 24 C 1.53095 * 109.41489 * 298.84274 * 23 22 21 25 25 H 1.09000 * 109.47354 * 60.00137 * 1 2 3 26 26 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47522 * 299.99897 * 1 2 3 28 28 H 1.09000 * 109.47522 * 240.00103 * 2 1 3 29 29 H 1.09000 * 109.47354 * 119.99863 * 2 1 3 30 30 H 0.96996 * 120.00350 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00630 * 264.99842 * 13 3 2 32 32 H 0.96708 * 116.99621 * 179.97438 * 19 17 16 33 33 H 1.09004 * 109.51365 * 177.19715 * 20 16 14 34 34 H 1.08998 * 109.53811 * 57.01160 * 20 16 14 35 35 H 1.09002 * 109.48343 * 182.42096 * 21 20 16 36 36 H 1.08999 * 109.47546 * 62.39689 * 21 20 16 37 37 H 1.09002 * 109.48282 * 58.82206 * 23 22 21 38 38 H 1.08997 * 109.48587 * 178.84728 * 23 22 21 39 39 H 1.09001 * 109.52141 * 177.51212 * 24 23 22 40 40 H 1.09003 * 109.52166 * 297.70284 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2279 8 7 3.4062 0.3367 2.1729 9 14 6.0048 0.8815 1.3818 10 1 6.5986 1.5475 0.1947 11 1 6.3989 1.6169 2.6102 12 1 6.4970 -0.5172 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6320 -0.4344 16 6 0.0361 3.3376 -2.6549 17 6 0.0831 2.3396 -3.7831 18 8 -0.9160 2.0978 -4.4179 19 8 1.2352 1.7194 -4.0829 20 6 1.0003 4.4906 -2.9501 21 6 0.8876 5.5371 -1.8384 22 8 -0.4643 5.9915 -1.7487 23 6 -1.4049 4.9646 -1.4276 24 6 -1.3844 3.8953 -2.5230 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0617 2.9495 31 1 2.2718 2.1232 -1.9979 32 1 1.2160 1.0872 -4.8144 33 1 0.7418 4.9457 -3.9062 34 1 2.0211 4.1108 -2.9907 35 1 1.5401 6.3803 -2.0653 36 1 1.1853 5.0922 -0.8889 37 1 -1.1372 4.5120 -0.4728 38 1 -2.4038 5.3952 -1.3584 39 1 -2.0690 3.0894 -2.2581 40 1 -1.6912 4.3384 -3.4705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589463736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -183.974013 kcal Electronic energy + Delta-G solvation = -24763.795191 eV Core-core repulsion = 21157.287034 eV Total energy + Delta-G solvation = -3606.508157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29295 -39.36098 -38.03865 -36.24373 -35.21152 -33.90653 -32.43165 -31.17525 -30.67216 -27.42312 -26.34316 -23.67555 -23.29008 -22.26028 -21.89291 -19.72318 -19.19226 -18.27866 -17.35902 -16.92601 -16.08574 -15.90613 -15.57665 -15.40878 -14.85758 -14.69549 -14.35171 -14.13565 -13.61383 -13.45356 -13.05134 -12.73985 -12.39220 -12.22302 -12.01518 -11.60953 -11.58917 -11.31221 -11.30627 -11.05758 -10.96621 -10.87557 -10.75096 -10.41073 -10.29532 -10.23499 -9.74014 -9.57469 -9.12919 -8.97702 -8.56961 -7.93385 -6.18378 -4.28012 2.02675 2.68279 3.19681 3.27904 3.29876 3.35652 3.81103 3.98642 4.29877 4.33187 4.59822 4.88759 5.12357 5.13382 5.20432 5.29746 5.50724 5.60608 5.61943 5.72756 5.86174 5.95754 6.06109 6.23678 6.32005 6.37289 6.40279 6.58002 6.96083 7.10393 7.26300 7.27074 7.32342 7.54127 7.64686 7.78902 7.81167 8.10103 8.51707 8.67769 8.95675 9.39243 10.86922 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.005870 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.591356 B = 4769.036103 C = 5008.226822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.692 5.692 14 C 0.512 3.488 15 O -0.531 6.531 16 C -0.076 4.076 17 C 0.497 3.503 18 O -0.508 6.508 19 O -0.506 6.506 20 C -0.139 4.139 21 C 0.061 3.939 22 O -0.385 6.385 23 C 0.051 3.949 24 C -0.116 4.116 25 H 0.034 0.966 26 H 0.023 0.977 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.101 0.899 30 H 0.264 0.736 31 H 0.395 0.605 32 H 0.412 0.588 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 5.857 -10.476 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.294 3.706 15 O -0.409 6.409 16 C -0.081 4.081 17 C 0.338 3.662 18 O -0.395 6.395 19 O -0.318 6.318 20 C -0.177 4.177 21 C -0.016 4.016 22 O -0.303 6.303 23 C -0.025 4.025 24 C -0.154 4.154 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.229 0.771 32 H 0.272 0.728 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.602 6.110 -9.476 12.178 hybrid contribution 1.357 -0.959 -0.867 1.875 sum -3.245 5.151 -10.343 12.002 Atomic orbital electron populations 1.21838 0.98423 0.98171 1.01010 1.21943 0.92494 0.99785 1.02428 1.18863 0.94436 0.89212 0.80626 0.93130 1.21234 0.90521 1.39149 1.06306 0.91938 1.24878 0.98629 0.94745 0.95365 1.69895 1.35092 1.37516 1.09358 0.86406 0.84815 0.77813 0.78147 1.19703 1.20872 1.20880 1.46571 1.14099 1.54440 1.18861 1.19542 0.83561 0.79956 0.87516 1.90655 1.51294 1.59364 1.39608 1.21025 1.00740 0.94193 0.92145 1.22900 0.80544 0.79492 0.83267 1.90700 1.35737 1.62228 1.50861 1.84513 1.37025 1.55562 1.54696 1.22254 0.99367 0.94767 1.01335 1.22579 0.84206 0.97347 0.97497 1.87877 1.16315 1.34688 1.91449 1.22893 0.93229 0.88143 0.98285 1.21909 0.92464 0.99957 1.01035 0.94733 0.95750 0.92988 0.94961 0.88125 0.92559 0.77103 0.72817 0.89820 0.88871 0.88087 0.91972 0.89698 0.88680 0.89349 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.42 2.24 -69.08 -0.15 6.27 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.41 8.73 -34.44 -0.30 -13.71 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.85 11.29 55.43 0.63 -23.23 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.69 -13.43 4.67 -54.93 -0.26 -13.69 16 14 C 0.51 9.45 3.71 -10.98 -0.04 9.41 16 15 O -0.53 -11.23 10.98 5.55 0.06 -11.17 16 16 C -0.08 -1.14 0.58 -156.63 -0.09 -1.23 16 17 C 0.50 7.21 6.92 36.01 0.25 7.46 16 18 O -0.51 -8.34 16.72 -18.74 -0.31 -8.65 16 19 O -0.51 -5.95 11.81 -39.25 -0.46 -6.41 16 20 C -0.14 -1.74 4.79 -26.59 -0.13 -1.87 16 21 C 0.06 0.81 6.62 37.20 0.25 1.05 16 22 O -0.38 -5.61 10.77 -35.23 -0.38 -5.99 16 23 C 0.05 0.73 6.55 37.21 0.24 0.97 16 24 C -0.12 -1.68 3.88 -26.59 -0.10 -1.78 16 25 H 0.03 0.74 5.64 -51.93 -0.29 0.44 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.32 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.39 6.93 6.62 -40.82 -0.27 6.66 16 32 H 0.41 2.99 9.10 45.56 0.41 3.41 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.09 7.52 -51.93 -0.39 0.69 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.96 7.38 -51.93 -0.38 0.57 16 37 H 0.08 1.42 5.80 -51.93 -0.30 1.12 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 40 H 0.08 1.08 8.02 -51.93 -0.42 0.66 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -30.07 316.62 -5.80 -35.87 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.82 Total: 11.18 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 0.00 Total: 2.40 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.37 Total: -36.92 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.10 Total: -32.22 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.07 -5.80 -35.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.102 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds