Wall clock time and date at job start Tue Mar 31 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46877 * 2 1 4 4 H 1.08996 * 109.47276 * 55.00173 * 3 2 1 5 5 C 1.50703 * 109.47095 * 175.00242 * 3 2 1 6 6 H 1.07997 * 120.00142 * 119.99858 * 5 3 2 7 7 C 1.37873 * 119.99676 * 299.99701 * 5 3 2 8 8 N 1.31516 * 120.00505 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99973 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47195 * 120.00227 * 9 7 5 12 12 H 1.48498 * 109.47366 * 239.99875 * 9 7 5 13 13 N 1.46498 * 109.46975 * 294.99684 * 3 2 1 14 14 C 1.34783 * 119.99863 * 85.00561 * 13 3 2 15 15 O 1.21283 * 119.99802 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00232 * 180.02562 * 14 13 3 17 17 C 1.50706 * 109.61508 * 59.77228 * 16 14 13 18 18 O 1.20819 * 120.00017 * 120.22845 * 17 16 14 19 19 O 1.34228 * 119.99718 * 300.22066 * 17 16 14 20 20 C 1.53177 * 109.53042 * 299.55765 * 16 14 13 21 21 C 1.53092 * 109.16443 * 297.09399 * 20 16 14 22 22 O 1.42905 * 109.42428 * 302.41109 * 21 20 16 23 23 C 1.42901 * 114.09770 * 61.14988 * 22 21 20 24 24 C 1.53095 * 109.41489 * 298.84274 * 23 22 21 25 25 H 1.09000 * 109.47354 * 60.00137 * 1 2 3 26 26 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47522 * 299.99897 * 1 2 3 28 28 H 1.09000 * 109.47522 * 240.00103 * 2 1 3 29 29 H 1.09000 * 109.47354 * 119.99863 * 2 1 3 30 30 H 0.96996 * 120.00350 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00630 * 264.99842 * 13 3 2 32 32 H 0.96708 * 116.99621 * 179.97438 * 19 17 16 33 33 H 1.09004 * 109.51365 * 177.19715 * 20 16 14 34 34 H 1.08998 * 109.53811 * 57.01160 * 20 16 14 35 35 H 1.09002 * 109.48343 * 182.42096 * 21 20 16 36 36 H 1.08999 * 109.47546 * 62.39689 * 21 20 16 37 37 H 1.09002 * 109.48282 * 58.82206 * 23 22 21 38 38 H 1.08997 * 109.48587 * 178.84728 * 23 22 21 39 39 H 1.09001 * 109.52141 * 177.51212 * 24 23 22 40 40 H 1.09003 * 109.52166 * 297.70284 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2279 8 7 3.4062 0.3367 2.1729 9 14 6.0048 0.8815 1.3818 10 1 6.5986 1.5475 0.1947 11 1 6.3989 1.6169 2.6102 12 1 6.4970 -0.5172 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6320 -0.4344 16 6 0.0361 3.3376 -2.6549 17 6 0.0831 2.3396 -3.7831 18 8 -0.9160 2.0978 -4.4179 19 8 1.2352 1.7194 -4.0829 20 6 1.0003 4.4906 -2.9501 21 6 0.8876 5.5371 -1.8384 22 8 -0.4643 5.9915 -1.7487 23 6 -1.4049 4.9646 -1.4276 24 6 -1.3844 3.8953 -2.5230 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0617 2.9495 31 1 2.2718 2.1232 -1.9979 32 1 1.2160 1.0872 -4.8144 33 1 0.7418 4.9457 -3.9062 34 1 2.0211 4.1108 -2.9907 35 1 1.5401 6.3803 -2.0653 36 1 1.1853 5.0922 -0.8889 37 1 -1.1372 4.5120 -0.4728 38 1 -2.4038 5.3952 -1.3584 39 1 -2.0690 3.0894 -2.2581 40 1 -1.6912 4.3384 -3.4705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589463736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:49 Heat of formation + Delta-G solvation = -205.830367 kcal Electronic energy + Delta-G solvation = -24764.742953 eV Core-core repulsion = 21157.287034 eV Total energy + Delta-G solvation = -3607.455919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.53189 -40.60811 -39.38242 -37.33483 -36.94038 -35.17292 -34.23138 -32.75558 -31.99823 -29.14660 -27.69642 -25.12917 -24.76643 -23.54029 -23.21240 -21.49235 -20.66984 -19.45203 -18.66727 -18.24364 -17.67012 -17.28155 -17.01512 -16.60642 -16.41422 -16.00601 -15.81496 -15.51636 -14.88694 -14.83431 -14.56024 -14.24402 -13.76570 -13.51371 -13.43087 -13.35819 -13.13360 -12.86098 -12.71640 -12.67057 -12.40025 -12.18577 -12.12043 -12.03835 -11.88832 -11.60380 -11.46225 -11.03979 -10.87900 -10.53789 -10.38462 -9.64831 -8.14819 -6.31394 0.85930 1.44896 1.46117 1.48246 1.58436 2.06138 2.31045 2.51168 2.90259 3.15402 3.17444 3.46242 3.79800 3.88548 4.06962 4.22958 4.41862 4.46439 4.47215 4.52783 4.58120 4.68972 4.71932 4.76345 4.90500 4.96493 5.02448 5.08907 5.23075 5.40535 5.43092 5.53812 5.61889 5.77822 5.90319 6.15626 6.16295 6.75604 6.82664 6.87845 7.32427 7.48229 8.90577 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.005870 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.591356 B = 4769.036103 C = 5008.226822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.004 0.996 5 C -0.543 4.543 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.282 1.282 13 N -0.688 5.688 14 C 0.512 3.488 15 O -0.561 6.561 16 C -0.074 4.074 17 C 0.504 3.496 18 O -0.528 6.528 19 O -0.500 6.500 20 C -0.134 4.134 21 C 0.057 3.943 22 O -0.389 6.389 23 C 0.053 3.947 24 C -0.113 4.113 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.264 0.736 31 H 0.406 0.594 32 H 0.434 0.566 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.032 0.968 37 H 0.054 0.946 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 6.484 -12.732 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.022 0.978 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.208 1.208 13 N -0.337 5.337 14 C 0.296 3.704 15 O -0.441 6.441 16 C -0.078 4.078 17 C 0.345 3.655 18 O -0.417 6.417 19 O -0.314 6.314 20 C -0.172 4.172 21 C -0.020 4.020 22 O -0.307 6.307 23 C -0.023 4.023 24 C -0.151 4.151 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.243 0.757 32 H 0.297 0.703 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.572 6.738 -11.781 14.034 hybrid contribution 1.019 -1.148 -0.151 1.543 sum -2.553 5.590 -11.933 13.422 Atomic orbital electron populations 1.21675 0.97238 0.99081 1.00040 1.21798 0.93440 0.99396 1.01383 1.18416 0.93818 0.89016 0.81073 0.97819 1.21568 0.91247 1.38746 1.06552 0.90847 1.25715 1.03000 0.94462 0.95110 1.70042 1.36902 1.38424 1.09910 0.85379 0.79517 0.77701 0.78235 1.18246 1.21208 1.20750 1.46277 1.14954 1.54675 1.17798 1.20101 0.82619 0.79125 0.88557 1.90654 1.52058 1.60132 1.41256 1.20983 1.01641 0.95034 0.90185 1.22648 0.80803 0.79231 0.82785 1.90703 1.36527 1.62796 1.51652 1.84456 1.35486 1.55773 1.55657 1.22319 0.99300 0.93501 1.02052 1.22716 0.84080 0.98691 0.96494 1.87875 1.16800 1.34761 1.91312 1.22839 0.94321 0.88310 0.96828 1.21894 0.91957 0.99500 1.01712 0.94486 0.93794 0.95087 0.94122 0.90830 0.92675 0.75749 0.70265 0.87197 0.87713 0.85096 0.94946 0.92751 0.86485 0.90805 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 13.58 2.24 44.25 0.10 13.67 16 4 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 5 C -0.54 -27.24 8.73 25.60 0.22 -27.02 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.90 5.29 84.65 0.45 1.34 16 8 N -0.91 -50.64 11.29 21.45 0.24 -50.40 16 9 Si 0.97 40.58 29.54 68.60 2.03 42.60 16 10 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 13 N -0.69 -26.51 4.67 -446.09 -2.08 -28.59 16 14 C 0.51 18.87 3.71 87.66 0.33 19.20 16 15 O -0.56 -24.51 10.98 -3.04 -0.03 -24.54 16 16 C -0.07 -2.09 0.58 -53.56 -0.03 -2.12 16 17 C 0.50 13.44 6.92 71.24 0.49 13.93 16 18 O -0.53 -16.18 16.72 21.98 0.37 -15.81 16 19 O -0.50 -10.25 11.81 -51.39 -0.61 -10.85 16 20 C -0.13 -3.00 4.79 30.68 0.15 -2.85 16 21 C 0.06 1.42 6.62 72.01 0.48 1.89 16 22 O -0.39 -10.77 10.77 -148.98 -1.60 -12.37 16 23 C 0.05 1.51 6.55 72.01 0.47 1.98 16 24 C -0.11 -3.13 3.88 30.68 0.12 -3.02 16 25 H 0.04 1.58 5.64 -2.39 -0.01 1.57 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.03 1.46 7.85 -2.39 -0.02 1.44 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 30 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.41 13.64 6.62 -92.70 -0.61 13.03 16 32 H 0.43 4.84 9.10 -74.05 -0.67 4.17 16 33 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.10 2.12 7.52 -2.39 -0.02 2.10 16 35 H 0.13 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.03 1.00 7.38 -2.39 -0.02 0.98 16 37 H 0.05 1.88 5.80 -2.39 -0.01 1.87 16 38 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 40 H 0.10 2.39 8.02 -2.39 -0.02 2.37 16 Total: -1.00 -65.82 316.62 1.65 -64.17 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.21 Total: 29.19 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 3.55 Total: 6.60 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.84 Total: -78.98 kcal Atomic # 8 Polarization: -61.70 SS G_CDS: -1.88 Total: -63.57 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Total: -65.82 1.65 -64.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589463736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.662 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds